Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01940

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01935 and RR42_RS01940 are separated by 24 nucleotidesRR42_RS01940 and RR42_RS01945 are separated by 125 nucleotidesRR42_RS01945 and RR42_RS01950 are separated by 18 nucleotides RR42_RS01935: RR42_RS01935 - pirin, at 433,826 to 434,701 _RS01935 RR42_RS01940: RR42_RS01940 - glycosyl transferase, at 434,726 to 435,754 _RS01940 RR42_RS01945: RR42_RS01945 - nitrate ABC transporter ATP-binding protein, at 435,880 to 436,683 _RS01945 RR42_RS01950: RR42_RS01950 - nitrate ABC transporter permease, at 436,702 to 437,640 _RS01950 Position (kb) 434 435 436Strain fitness (log2 ratio) -2 -1 0 1at 433.757 kb on + strandat 433.765 kb on - strandat 433.822 kb on + strandat 433.849 kb on - strandat 433.859 kb on - strandat 434.024 kb on + strand, within RR42_RS01935at 434.024 kb on + strand, within RR42_RS01935at 434.024 kb on + strand, within RR42_RS01935at 434.025 kb on - strand, within RR42_RS01935at 434.025 kb on - strand, within RR42_RS01935at 434.025 kb on - strand, within RR42_RS01935at 434.025 kb on - strand, within RR42_RS01935at 434.280 kb on + strand, within RR42_RS01935at 434.281 kb on - strand, within RR42_RS01935at 434.351 kb on + strand, within RR42_RS01935at 434.351 kb on + strand, within RR42_RS01935at 434.351 kb on + strand, within RR42_RS01935at 434.352 kb on - strand, within RR42_RS01935at 434.355 kb on + strand, within RR42_RS01935at 434.355 kb on + strand, within RR42_RS01935at 434.356 kb on - strand, within RR42_RS01935at 434.985 kb on - strand, within RR42_RS01940at 434.985 kb on - strand, within RR42_RS01940at 435.039 kb on + strand, within RR42_RS01940at 435.075 kb on + strand, within RR42_RS01940at 435.075 kb on + strand, within RR42_RS01940at 435.075 kb on + strand, within RR42_RS01940at 435.075 kb on + strand, within RR42_RS01940at 435.075 kb on + strand, within RR42_RS01940at 435.075 kb on + strand, within RR42_RS01940at 435.075 kb on + strand, within RR42_RS01940at 435.076 kb on - strand, within RR42_RS01940at 435.076 kb on - strand, within RR42_RS01940at 435.076 kb on - strand, within RR42_RS01940at 435.076 kb on - strand, within RR42_RS01940at 435.076 kb on - strand, within RR42_RS01940at 435.076 kb on - strand, within RR42_RS01940at 435.076 kb on - strand, within RR42_RS01940at 435.079 kb on + strand, within RR42_RS01940at 435.079 kb on + strand, within RR42_RS01940at 435.079 kb on + strand, within RR42_RS01940at 435.079 kb on + strand, within RR42_RS01940at 435.080 kb on - strand, within RR42_RS01940at 435.080 kb on - strand, within RR42_RS01940at 435.081 kb on + strand, within RR42_RS01940at 435.081 kb on + strand, within RR42_RS01940at 435.081 kb on + strand, within RR42_RS01940at 435.142 kb on + strand, within RR42_RS01940at 435.142 kb on + strand, within RR42_RS01940at 435.143 kb on - strand, within RR42_RS01940at 435.143 kb on - strand, within RR42_RS01940at 435.441 kb on + strand, within RR42_RS01940at 435.441 kb on + strand, within RR42_RS01940at 435.442 kb on - strand, within RR42_RS01940at 435.442 kb on - strand, within RR42_RS01940at 435.555 kb on + strand, within RR42_RS01940at 435.556 kb on - strand, within RR42_RS01940at 435.556 kb on - strand, within RR42_RS01940at 435.556 kb on - strand, within RR42_RS01940at 435.556 kb on - strand, within RR42_RS01940at 435.556 kb on - strand, within RR42_RS01940at 435.684 kb on + strandat 435.684 kb on + strandat 435.684 kb on + strandat 435.685 kb on - strandat 435.956 kb on + strandat 435.957 kb on - strandat 436.280 kb on + strand, within RR42_RS01945at 436.280 kb on + strand, within RR42_RS01945at 436.388 kb on + strand, within RR42_RS01945at 436.388 kb on + strand, within RR42_RS01945at 436.389 kb on - strand, within RR42_RS01945at 436.389 kb on - strand, within RR42_RS01945at 436.389 kb on - strand, within RR42_RS01945at 436.572 kb on + strand, within RR42_RS01945at 436.573 kb on - strand, within RR42_RS01945at 436.703 kb on + strandat 436.703 kb on + strandat 436.703 kb on + strandat 436.703 kb on + strandat 436.704 kb on - strandat 436.704 kb on - strandat 436.704 kb on - strandat 436.704 kb on - strandat 436.704 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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433,757 + -1.0
433,765 - +0.9
433,822 + +0.0
433,849 - +0.1
433,859 - +0.6
434,024 + RR42_RS01935 0.23 +0.1
434,024 + RR42_RS01935 0.23 +0.1
434,024 + RR42_RS01935 0.23 +0.7
434,025 - RR42_RS01935 0.23 -0.5
434,025 - RR42_RS01935 0.23 +0.5
434,025 - RR42_RS01935 0.23 +0.9
434,025 - RR42_RS01935 0.23 -1.6
434,280 + RR42_RS01935 0.52 -1.0
434,281 - RR42_RS01935 0.52 +0.4
434,351 + RR42_RS01935 0.60 -0.2
434,351 + RR42_RS01935 0.60 +0.8
434,351 + RR42_RS01935 0.60 -0.1
434,352 - RR42_RS01935 0.60 -0.2
434,355 + RR42_RS01935 0.60 +0.5
434,355 + RR42_RS01935 0.60 +0.1
434,356 - RR42_RS01935 0.61 -0.6
434,985 - RR42_RS01940 0.25 -0.2
434,985 - RR42_RS01940 0.25 -1.2
435,039 + RR42_RS01940 0.30 +0.4
435,075 + RR42_RS01940 0.34 -1.9
435,075 + RR42_RS01940 0.34 +0.2
435,075 + RR42_RS01940 0.34 -0.3
435,075 + RR42_RS01940 0.34 -0.1
435,075 + RR42_RS01940 0.34 -0.5
435,075 + RR42_RS01940 0.34 -1.0
435,075 + RR42_RS01940 0.34 +0.6
435,076 - RR42_RS01940 0.34 -0.6
435,076 - RR42_RS01940 0.34 -1.5
435,076 - RR42_RS01940 0.34 -0.9
435,076 - RR42_RS01940 0.34 -0.3
435,076 - RR42_RS01940 0.34 -0.3
435,076 - RR42_RS01940 0.34 -0.1
435,076 - RR42_RS01940 0.34 +0.0
435,079 + RR42_RS01940 0.34 -0.5
435,079 + RR42_RS01940 0.34 +0.7
435,079 + RR42_RS01940 0.34 -1.1
435,079 + RR42_RS01940 0.34 -0.8
435,080 - RR42_RS01940 0.34 +0.2
435,080 - RR42_RS01940 0.34 +0.1
435,081 + RR42_RS01940 0.34 -0.8
435,081 + RR42_RS01940 0.34 +0.5
435,081 + RR42_RS01940 0.34 -0.4
435,142 + RR42_RS01940 0.40 -0.0
435,142 + RR42_RS01940 0.40 -1.3
435,143 - RR42_RS01940 0.41 -2.2
435,143 - RR42_RS01940 0.41 -0.6
435,441 + RR42_RS01940 0.69 +0.6
435,441 + RR42_RS01940 0.69 +0.6
435,442 - RR42_RS01940 0.70 -0.2
435,442 - RR42_RS01940 0.70 +0.5
435,555 + RR42_RS01940 0.81 -0.4
435,556 - RR42_RS01940 0.81 +0.5
435,556 - RR42_RS01940 0.81 -0.2
435,556 - RR42_RS01940 0.81 -0.7
435,556 - RR42_RS01940 0.81 -0.4
435,556 - RR42_RS01940 0.81 -0.2
435,684 + +0.2
435,684 + -1.8
435,684 + +0.1
435,685 - -0.3
435,956 + +1.2
435,957 - -0.3
436,280 + RR42_RS01945 0.50 -0.2
436,280 + RR42_RS01945 0.50 -0.8
436,388 + RR42_RS01945 0.63 +0.5
436,388 + RR42_RS01945 0.63 -0.6
436,389 - RR42_RS01945 0.63 -1.1
436,389 - RR42_RS01945 0.63 -1.0
436,389 - RR42_RS01945 0.63 +0.5
436,572 + RR42_RS01945 0.86 -0.5
436,573 - RR42_RS01945 0.86 -0.8
436,703 + -0.2
436,703 + -0.1
436,703 + +0.7
436,703 + -1.0
436,704 - -0.4
436,704 - +1.0
436,704 - +0.1
436,704 - -0.1
436,704 - +0.1

Or see this region's nucleotide sequence