Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01090 and RR42_RS01095 are separated by 214 nucleotides RR42_RS01095 and RR42_RS01100 are separated by 35 nucleotides RR42_RS01100 and RR42_RS01105 are separated by 94 nucleotides RR42_RS01105 and RR42_RS01110 are separated by 0 nucleotides RR42_RS01110 and RR42_RS01115 overlap by 4 nucleotides
RR42_RS01090: RR42_RS01090 - histidine kinase, at 254,273 to 255,676
_RS01090
RR42_RS01095: RR42_RS01095 - membrane protein, at 255,891 to 256,370
_RS01095
RR42_RS01100: RR42_RS01100 - LysR family transcriptional regulator, at 256,406 to 257,341
_RS01100
RR42_RS01105: RR42_RS01105 - membrane protein, at 257,436 to 257,948
_RS01105
RR42_RS01110: RR42_RS01110 - hypothetical protein, at 257,949 to 258,176
_RS01110
RR42_RS01115: RR42_RS01115 - hypothetical protein, at 258,173 to 258,400
_RS01115
Position (kb) 256
257
258 Strain fitness (log2 ratio) -2
-1
0
1 at 255.670 kb on + strand at 255.671 kb on - strand at 255.688 kb on - strand at 255.688 kb on - strand at 255.844 kb on - strand at 255.844 kb on - strand at 255.856 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 256.074 kb on - strand, within RR42_RS01095 at 256.394 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.408 kb on - strand at 256.480 kb on + strand at 256.480 kb on + strand at 256.481 kb on - strand at 256.830 kb on + strand, within RR42_RS01100 at 256.831 kb on - strand, within RR42_RS01100 at 256.831 kb on - strand, within RR42_RS01100 at 257.025 kb on + strand, within RR42_RS01100 at 257.026 kb on - strand, within RR42_RS01100 at 257.273 kb on - strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.350 kb on + strand at 257.350 kb on + strand at 257.360 kb on - strand at 257.392 kb on - strand at 257.706 kb on + strand, within RR42_RS01105 at 257.707 kb on - strand, within RR42_RS01105 at 257.707 kb on - strand, within RR42_RS01105 at 257.707 kb on - strand, within RR42_RS01105 at 257.707 kb on - strand, within RR42_RS01105 at 257.712 kb on - strand, within RR42_RS01105 at 257.712 kb on - strand, within RR42_RS01105 at 257.712 kb on - strand, within RR42_RS01105 at 257.757 kb on - strand, within RR42_RS01105
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 255,670 + -1.3 255,671 - +0.5 255,688 - +0.8 255,688 - +0.4 255,844 - -0.1 255,844 - +0.3 255,856 - +1.1 255,884 - -0.9 255,884 - -0.5 255,884 - +0.1 255,884 - -1.4 256,074 - RR42_RS01095 0.38 -1.4 256,394 + +0.2 256,407 + +0.0 256,407 + -0.3 256,407 + -0.9 256,408 - -0.1 256,480 + -1.2 256,480 + +1.5 256,481 - +0.6 256,830 + RR42_RS01100 0.45 -0.1 256,831 - RR42_RS01100 0.45 -0.1 256,831 - RR42_RS01100 0.45 +0.8 257,025 + RR42_RS01100 0.66 -2.3 257,026 - RR42_RS01100 0.66 +0.3 257,273 - -1.4 257,273 - +1.2 257,273 - +0.1 257,273 - -1.7 257,350 + +0.7 257,350 + +0.6 257,360 - +0.2 257,392 - -1.3 257,706 + RR42_RS01105 0.53 +0.1 257,707 - RR42_RS01105 0.53 -0.1 257,707 - RR42_RS01105 0.53 +0.4 257,707 - RR42_RS01105 0.53 +1.1 257,707 - RR42_RS01105 0.53 -2.0 257,712 - RR42_RS01105 0.54 +0.6 257,712 - RR42_RS01105 0.54 +0.2 257,712 - RR42_RS01105 0.54 +1.6 257,757 - RR42_RS01105 0.63 -0.2
Or see this region's nucleotide sequence