Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01080 and RR42_RS01085 are separated by 23 nucleotides RR42_RS01085 and RR42_RS01090 overlap by 4 nucleotides RR42_RS01090 and RR42_RS01095 are separated by 214 nucleotides RR42_RS01095 and RR42_RS01100 are separated by 35 nucleotides
RR42_RS01080: RR42_RS01080 - hypothetical protein, at 253,333 to 253,629
_RS01080
RR42_RS01085: RR42_RS01085 - chemotaxis protein CheY, at 253,653 to 254,276
_RS01085
RR42_RS01090: RR42_RS01090 - histidine kinase, at 254,273 to 255,676
_RS01090
RR42_RS01095: RR42_RS01095 - membrane protein, at 255,891 to 256,370
_RS01095
RR42_RS01100: RR42_RS01100 - LysR family transcriptional regulator, at 256,406 to 257,341
_RS01100
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1 at 253.346 kb on + strand at 253.346 kb on + strand at 253.346 kb on + strand at 253.346 kb on + strand at 253.347 kb on - strand at 253.347 kb on - strand at 253.347 kb on - strand at 253.425 kb on - strand, within RR42_RS01080 at 253.609 kb on + strand at 253.609 kb on + strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.637 kb on + strand at 253.638 kb on - strand at 253.654 kb on + strand at 253.655 kb on - strand at 253.706 kb on + strand at 253.706 kb on + strand at 253.706 kb on + strand at 253.706 kb on + strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.733 kb on + strand, within RR42_RS01085 at 253.733 kb on + strand, within RR42_RS01085 at 253.733 kb on + strand, within RR42_RS01085 at 253.733 kb on + strand, within RR42_RS01085 at 253.734 kb on - strand, within RR42_RS01085 at 253.894 kb on + strand, within RR42_RS01085 at 253.895 kb on - strand, within RR42_RS01085 at 253.895 kb on - strand, within RR42_RS01085 at 253.945 kb on + strand, within RR42_RS01085 at 253.945 kb on + strand, within RR42_RS01085 at 254.077 kb on + strand, within RR42_RS01085 at 254.077 kb on + strand, within RR42_RS01085 at 254.078 kb on - strand, within RR42_RS01085 at 254.433 kb on + strand, within RR42_RS01090 at 254.434 kb on - strand, within RR42_RS01090 at 254.754 kb on + strand, within RR42_RS01090 at 254.754 kb on + strand, within RR42_RS01090 at 254.754 kb on + strand, within RR42_RS01090 at 254.755 kb on - strand, within RR42_RS01090 at 254.755 kb on - strand, within RR42_RS01090 at 254.827 kb on - strand, within RR42_RS01090 at 254.874 kb on + strand, within RR42_RS01090 at 254.875 kb on - strand, within RR42_RS01090 at 254.875 kb on - strand, within RR42_RS01090 at 255.150 kb on + strand, within RR42_RS01090 at 255.150 kb on + strand, within RR42_RS01090 at 255.151 kb on - strand, within RR42_RS01090 at 255.151 kb on - strand, within RR42_RS01090 at 255.192 kb on + strand, within RR42_RS01090 at 255.192 kb on + strand, within RR42_RS01090 at 255.193 kb on - strand, within RR42_RS01090 at 255.193 kb on - strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.214 kb on - strand, within RR42_RS01090 at 255.229 kb on - strand, within RR42_RS01090 at 255.294 kb on + strand, within RR42_RS01090 at 255.295 kb on - strand, within RR42_RS01090 at 255.670 kb on + strand at 255.671 kb on - strand at 255.688 kb on - strand at 255.688 kb on - strand at 255.844 kb on - strand at 255.844 kb on - strand at 255.856 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 256.074 kb on - strand, within RR42_RS01095 at 256.394 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.408 kb on - strand at 256.480 kb on + strand at 256.480 kb on + strand at 256.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 253,346 + +0.1 253,346 + -0.1 253,346 + -0.5 253,346 + +0.5 253,347 - -0.3 253,347 - +0.2 253,347 - -0.2 253,425 - RR42_RS01080 0.31 -0.8 253,609 + +0.1 253,609 + +1.1 253,610 - -0.4 253,610 - +0.0 253,610 - -0.7 253,610 - -0.0 253,610 - +0.3 253,637 + +0.3 253,638 - +0.3 253,654 + -0.3 253,655 - +0.6 253,706 + -0.3 253,706 + +0.4 253,706 + +0.6 253,706 + +0.8 253,707 - -1.0 253,707 - -0.7 253,707 - -1.9 253,707 - +0.5 253,707 - +1.1 253,707 - +1.1 253,733 + RR42_RS01085 0.13 -0.4 253,733 + RR42_RS01085 0.13 +0.3 253,733 + RR42_RS01085 0.13 +1.1 253,733 + RR42_RS01085 0.13 -0.3 253,734 - RR42_RS01085 0.13 -2.5 253,894 + RR42_RS01085 0.39 +0.9 253,895 - RR42_RS01085 0.39 -1.9 253,895 - RR42_RS01085 0.39 -0.3 253,945 + RR42_RS01085 0.47 +0.5 253,945 + RR42_RS01085 0.47 +0.1 254,077 + RR42_RS01085 0.68 -2.5 254,077 + RR42_RS01085 0.68 -0.6 254,078 - RR42_RS01085 0.68 +1.5 254,433 + RR42_RS01090 0.11 +0.6 254,434 - RR42_RS01090 0.11 -0.4 254,754 + RR42_RS01090 0.34 -1.0 254,754 + RR42_RS01090 0.34 +0.0 254,754 + RR42_RS01090 0.34 -1.2 254,755 - RR42_RS01090 0.34 -0.1 254,755 - RR42_RS01090 0.34 -1.0 254,827 - RR42_RS01090 0.39 -0.1 254,874 + RR42_RS01090 0.43 -0.1 254,875 - RR42_RS01090 0.43 +0.5 254,875 - RR42_RS01090 0.43 -0.6 255,150 + RR42_RS01090 0.62 +0.1 255,150 + RR42_RS01090 0.62 +0.2 255,151 - RR42_RS01090 0.63 -1.2 255,151 - RR42_RS01090 0.63 +1.1 255,192 + RR42_RS01090 0.65 -0.8 255,192 + RR42_RS01090 0.65 -1.5 255,193 - RR42_RS01090 0.66 -0.1 255,193 - RR42_RS01090 0.66 -0.2 255,213 + RR42_RS01090 0.67 -0.5 255,213 + RR42_RS01090 0.67 -1.5 255,213 + RR42_RS01090 0.67 +1.2 255,213 + RR42_RS01090 0.67 +0.5 255,214 - RR42_RS01090 0.67 -0.4 255,229 - RR42_RS01090 0.68 +0.6 255,294 + RR42_RS01090 0.73 -0.5 255,295 - RR42_RS01090 0.73 -0.0 255,670 + -1.3 255,671 - +0.5 255,688 - +0.8 255,688 - +0.4 255,844 - -0.1 255,844 - +0.3 255,856 - +1.1 255,884 - -0.9 255,884 - -0.5 255,884 - +0.1 255,884 - -1.4 256,074 - RR42_RS01095 0.38 -1.4 256,394 + +0.2 256,407 + +0.0 256,407 + -0.3 256,407 + -0.9 256,408 - -0.1 256,480 + -1.2 256,480 + +1.5 256,481 - +0.6
Or see this region's nucleotide sequence