Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00240

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
46,586	+		MMJJ_RS00235	0.55	-4.5
46,586	+		MMJJ_RS00235	0.55	-5.0
46,594	+		MMJJ_RS00235	0.55	-4.6
46,673	-		MMJJ_RS00235	0.59	-4.2
46,674	+		MMJJ_RS00235	0.59	-3.5
46,681	-		MMJJ_RS00235	0.60	-4.4
46,682	+		MMJJ_RS00235	0.60	-5.4
46,686	+		MMJJ_RS00235	0.60	-3.7
46,686	+		MMJJ_RS00235	0.60	-3.6
46,723	-		MMJJ_RS00235	0.62	-2.8
46,724	+		MMJJ_RS00235	0.62	-4.3
46,730	+		MMJJ_RS00235	0.62	-4.4
46,747	+		MMJJ_RS00235	0.63	-0.0
46,747	+		MMJJ_RS00235	0.63	-2.8
46,760	-		MMJJ_RS00235	0.64	-4.4
46,760	-		MMJJ_RS00235	0.64	-5.2
46,760	-		MMJJ_RS00235	0.64	-5.7
46,761	+		MMJJ_RS00235	0.64	-4.6
46,762	-		MMJJ_RS00235	0.64	-2.3
46,763	+		MMJJ_RS00235	0.64	-4.0
46,763	+		MMJJ_RS00235	0.64	-4.0
46,769	-		MMJJ_RS00235	0.64	-4.3
46,769	-		MMJJ_RS00235	0.64	-5.2
46,774	-		MMJJ_RS00235	0.65	-2.9
46,774	-		MMJJ_RS00235	0.65	-3.1
46,775	+		MMJJ_RS00235	0.65	-3.7
46,847	-		MMJJ_RS00235	0.69	-5.7
46,860	-		MMJJ_RS00235	0.69	-4.2
47,043	+		MMJJ_RS00235	0.79	-5.5
47,060	-		MMJJ_RS00235	0.80	-0.6
47,174	-		MMJJ_RS00235	0.86	-3.4
47,174	-		MMJJ_RS00235	0.86	-4.8
47,174	-		MMJJ_RS00235	0.86	-4.0
47,174	-		MMJJ_RS00235	0.86	-5.2
47,174	-		MMJJ_RS00235	0.86	-4.8
47,174	-		MMJJ_RS00235	0.86	-4.4
47,174	-		MMJJ_RS00235	0.86	-4.0
47,175	+		MMJJ_RS00235	0.86	-3.4
47,175	+		MMJJ_RS00235	0.86	-0.9
47,175	+		MMJJ_RS00235	0.86	-4.6
47,346	+				-3.3
47,389	-				-3.4
47,423	-				-5.4
47,423	-				-4.2
47,423	-				-5.1
47,423	-				-3.1
47,423	-				-3.7
47,423	-				-3.4
47,423	-				-1.1
47,423	-				-2.6
47,423	-				-4.7
47,424	+				-0.8
47,424	+				-3.6
47,424	+				-5.9
47,424	+				-5.0
47,424	+				-5.2
47,424	+				-1.0
47,425	-				-5.1
47,425	-				-4.8
47,425	-				-2.8
47,425	-				-4.5
47,425	-				-4.2
47,425	-				-3.2
47,425	-				-4.5
47,425	-				-3.8
47,425	-				-4.6
47,426	+				-4.3
47,426	+				-2.4
47,426	+				-3.1
47,426	+				-6.0
47,426	+				-2.6
47,426	+				-4.5
47,426	+				-3.5
47,426	+				-3.3
47,427	-				-3.9
47,427	-				-2.0
47,427	-				-3.5
47,427	-				-4.2
47,427	-				-4.2
47,427	-				-2.3
47,428	+				-5.0
47,428	+				-4.6
47,428	+				-3.2
47,450	-				-1.1
47,451	+				-3.0
47,451	+				-1.8
47,454	-				-0.7
47,460	-				-2.3
47,471	-				-0.4
47,472	+				-3.5
47,472	+				-1.1
47,477	-				-1.5
47,478	+				-2.2
47,478	+				-4.0
47,479	-				-1.4
47,479	-				-2.3
47,494	+				-0.5
47,494	+				+0.4
47,529	-				-1.5
47,530	+				-0.3
47,553	+				-0.5
47,555	-				-0.9
47,555	-				+0.4
47,568	+				+0.8
47,576	-				-1.2
47,576	-				-0.4
47,577	+				+0.3
47,577	+				-0.1
47,577	+				+0.7
47,597	-				-0.7
47,598	+				-0.0
47,598	+				+0.6
47,598	+				+0.4
47,602	+				-0.1
47,629	-		MMJJ_RS00240	0.12	-0.8
47,665	-		MMJJ_RS00240	0.15	-1.7
47,668	+		MMJJ_RS00240	0.15	-0.4
47,690	-		MMJJ_RS00240	0.18	-2.2
47,697	-		MMJJ_RS00240	0.18	-1.4
47,698	+		MMJJ_RS00240	0.18	-0.3
47,709	+		MMJJ_RS00240	0.19	-2.9
47,724	+		MMJJ_RS00240	0.21	-0.7
47,741	-		MMJJ_RS00240	0.23	-1.1
47,779	-		MMJJ_RS00240	0.26	-0.8
47,779	-		MMJJ_RS00240	0.26	+0.1
47,797	-		MMJJ_RS00240	0.28	-1.1
47,798	+		MMJJ_RS00240	0.28	-0.5
47,799	-		MMJJ_RS00240	0.28	+1.0
47,799	-		MMJJ_RS00240	0.28	+0.2
47,799	-		MMJJ_RS00240	0.28	-0.1
47,799	-		MMJJ_RS00240	0.28	-0.6
47,799	-		MMJJ_RS00240	0.28	-0.0
47,799	-		MMJJ_RS00240	0.28	+0.2
47,800	+		MMJJ_RS00240	0.28	-1.3
47,800	+		MMJJ_RS00240	0.28	-0.0
47,800	+		MMJJ_RS00240	0.28	-1.5
47,804	-		MMJJ_RS00240	0.29	+0.4
47,811	-		MMJJ_RS00240	0.30	-0.6
47,814	+		MMJJ_RS00240	0.30	-1.7
47,818	-		MMJJ_RS00240	0.30	-0.1
47,819	+		MMJJ_RS00240	0.30	-1.7
47,819	+		MMJJ_RS00240	0.30	-0.6
47,819	+		MMJJ_RS00240	0.30	-2.0
47,820	-		MMJJ_RS00240	0.30	-1.8
47,822	-		MMJJ_RS00240	0.31	-1.3
47,822	-		MMJJ_RS00240	0.31	-0.5
47,823	+		MMJJ_RS00240	0.31	+0.7
47,828	-		MMJJ_RS00240	0.31	+0.6
47,828	-		MMJJ_RS00240	0.31	-1.4
47,829	+		MMJJ_RS00240	0.31	-2.0
47,853	+		MMJJ_RS00240	0.34	-1.6
47,921	+		MMJJ_RS00240	0.40	+0.3
47,934	+		MMJJ_RS00240	0.42	+0.4
47,956	+		MMJJ_RS00240	0.44	-0.3
47,971	-		MMJJ_RS00240	0.45	-0.8
47,971	-		MMJJ_RS00240	0.45	-0.3
47,974	-		MMJJ_RS00240	0.46	-1.5
47,994	-		MMJJ_RS00240	0.48	-2.1
47,995	+		MMJJ_RS00240	0.48	-0.0
47,995	+		MMJJ_RS00240	0.48	-0.8
47,995	+		MMJJ_RS00240	0.48	+0.2
47,995	+		MMJJ_RS00240	0.48	+0.0
48,080	+		MMJJ_RS00240	0.56	+0.8
48,080	+		MMJJ_RS00240	0.56	-0.3
48,118	+		MMJJ_RS00240	0.60	-1.2
48,233	-		MMJJ_RS00240	0.71	+0.1
48,235	-		MMJJ_RS00240	0.72	-0.2
48,235	-		MMJJ_RS00240	0.72	-3.8
48,235	-		MMJJ_RS00240	0.72	-0.2
48,235	-		MMJJ_RS00240	0.72	-0.8
48,235	-		MMJJ_RS00240	0.72	-0.8
48,235	-		MMJJ_RS00240	0.72	-0.1
48,235	-		MMJJ_RS00240	0.72	-0.1
48,235	-		MMJJ_RS00240	0.72	-2.0
48,236	+		MMJJ_RS00240	0.72	-0.4
48,236	+		MMJJ_RS00240	0.72	-1.9
48,236	+		MMJJ_RS00240	0.72	-0.8
48,236	+		MMJJ_RS00240	0.72	+0.2
48,236	+		MMJJ_RS00240	0.72	+0.2
48,257	+		MMJJ_RS00240	0.74	-0.1
48,290	-		MMJJ_RS00240	0.77	-0.5
48,338	-		MMJJ_RS00240	0.82	-0.3
48,338	-		MMJJ_RS00240	0.82	+0.7
48,356	-		MMJJ_RS00240	0.83	-1.0
48,357	+		MMJJ_RS00240	0.84	-2.3
48,372	-		MMJJ_RS00240	0.85	+0.2
48,444	+				-0.4
48,501	-				+0.3
48,501	-				+0.8
48,502	+				+0.6
48,504	-				-1.8
48,507	-				-1.6
48,508	+				+0.3
48,508	+				+1.2
48,509	-				-3.4
48,510	+				-2.1
48,521	+				+1.5
48,585	-				-1.8
48,901	+		MMJJ_RS00245	0.79	+0.4
48,993	-				-1.5
48,995	-				-0.7
48,995	-				+1.0
49,006	-				+0.1
49,006	-				-0.2
49,006	-				+0.4
49,010	-				+1.1
49,011	+				-0.3
49,029	-				+0.1
49,029	-				-0.2
49,030	+				-1.1
49,030	+				-1.3
49,030	+				-0.0
49,030	+				+0.0
49,040	+				-0.1
49,056	+				+0.1
49,056	+				-1.1
49,056	+				+0.7
49,056	+				+0.0
49,123	+		MMJJ_RS00250	0.14	+1.0
49,123	+		MMJJ_RS00250	0.14	-0.3
49,125	+		MMJJ_RS00250	0.14	+0.8
49,155	-		MMJJ_RS00250	0.18	-0.4
49,155	-		MMJJ_RS00250	0.18	+0.8
49,156	+		MMJJ_RS00250	0.18	+0.1
49,156	+		MMJJ_RS00250	0.18	+1.8
49,221	-		MMJJ_RS00250	0.26	+0.4
49,221	-		MMJJ_RS00250	0.26	-0.5
49,222	+		MMJJ_RS00250	0.26	+0.3
49,247	+		MMJJ_RS00250	0.29	-1.8
49,257	-		MMJJ_RS00250	0.30	+0.0
49,324	+		MMJJ_RS00250	0.38	+0.2
49,324	+		MMJJ_RS00250	0.38	+0.1
49,381	-		MMJJ_RS00250	0.46	+0.7
49,382	+		MMJJ_RS00250	0.46	+1.1
49,385	-		MMJJ_RS00250	0.46	-0.9
49,397	-		MMJJ_RS00250	0.47	+1.1
49,433	-		MMJJ_RS00250	0.52	-0.5
49,508	-		MMJJ_RS00250	0.61	+0.2
49,509	+		MMJJ_RS00250	0.61	-0.3