Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08355

Experiment: R2A with arsenate 15.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with arsenate 15.625 mM
1,819,900	+		LRK54_RS08345	0.84	-0.5
1,819,901	-		LRK54_RS08345	0.84	+1.4
1,819,901	-		LRK54_RS08345	0.84	+0.7
1,819,901	-		LRK54_RS08345	0.84	+1.5
1,819,901	-		LRK54_RS08345	0.84	+0.2
1,819,958	+				-0.9
1,820,016	+				-2.0
1,820,016	+				-0.1
1,820,016	+				-0.5
1,820,016	+				-0.4
1,820,016	+				+0.2
1,820,016	+				+1.6
1,820,016	+				+0.0
1,820,016	+				+1.6
1,820,016	+				-0.0
1,820,016	+				-0.1
1,820,016	+				-0.8
1,820,016	+				-0.4
1,820,016	+				+3.3
1,820,016	+				+0.7
1,820,016	+				-0.2
1,820,016	+				+0.6
1,820,016	+				-0.0
1,820,016	+				+1.0
1,820,016	+				-0.3
1,820,016	+				-1.0
1,820,016	+				-0.9
1,820,016	+				+1.7
1,820,016	+				-2.5
1,820,016	+				-1.2
1,820,016	+				+0.3
1,820,016	+				+0.7
1,820,016	+				+0.3
1,820,016	+				+1.0
1,820,016	+				-0.7
1,820,016	+				+1.1
1,820,016	+				-0.6
1,820,016	+				-0.7
1,820,016	+				+0.2
1,820,016	+				-2.6
1,820,016	+				-1.2
1,820,016	+				+0.2
1,820,016	+				-1.5
1,820,016	+				-0.9
1,820,016	+				-0.6
1,820,016	+				+0.3
1,820,016	+				+0.8
1,820,016	+				+0.7
1,820,016	+				+0.2
1,820,016	+				-0.7
1,820,016	+				-0.7
1,820,016	+				+0.3
1,820,016	+				+0.8
1,820,016	+				-0.4
1,820,017	-				+0.4
1,820,017	-				+0.5
1,820,017	-				+0.6
1,820,017	-				-1.3
1,820,017	-				-0.3
1,820,017	-				-0.6
1,820,017	-				+1.4
1,820,017	-				+0.3
1,820,017	-				+0.3
1,820,017	-				-1.2
1,820,017	-				-0.6
1,820,017	-				+0.1
1,820,017	-				-1.5
1,820,017	-				-1.0
1,820,017	-				-1.5
1,820,017	-				+1.5
1,820,017	-				-1.1
1,820,017	-				-0.6
1,820,017	-				-2.2
1,820,017	-				+0.6
1,820,017	-				-1.9
1,820,017	-				+0.3
1,820,017	-				-0.7
1,820,017	-				-2.2
1,820,017	-				-0.8
1,820,017	-				-0.7
1,820,017	-				-1.6
1,820,017	-				+0.9
1,820,017	-				+0.2
1,820,017	-				-0.6
1,820,017	-				-0.7
1,820,017	-				-1.1
1,820,017	-				+0.8
1,820,017	-				+0.4
1,820,017	-				-1.1
1,820,017	-				-0.1
1,820,017	-				+0.1
1,820,017	-				+0.3
1,820,017	-				-0.3
1,820,017	-				+0.2
1,820,017	-				-1.2
1,820,017	-				-0.1
1,820,017	-				+0.4
1,820,017	-				+0.3
1,820,017	-				-0.3
1,820,017	-				+1.3
1,820,017	-				+0.7
1,820,017	-				+0.5
1,820,017	-				-0.3
1,820,017	-				-0.9
1,820,017	-				-1.6
1,820,017	-				-0.4
1,820,017	-				-1.8
1,820,017	-				+0.3
1,820,073	+				+1.4
1,820,073	+				+1.6
1,820,073	+				-1.0
1,820,073	+				-0.3
1,820,073	+				+0.1
1,820,073	+				-1.9
1,820,073	+				-0.1
1,820,073	+				-1.2
1,820,073	+				+0.6
1,820,073	+				+0.0
1,820,073	+				-1.4
1,820,073	+				+1.6
1,820,073	+				-0.3
1,820,073	+				-1.3
1,820,073	+				+1.2
1,820,073	+				-0.5
1,820,074	-				+0.8
1,820,074	-				+0.2
1,820,074	-				-0.1
1,820,074	-				-2.3
1,820,074	-				+0.7
1,820,074	-				-0.0
1,820,074	-				+0.1
1,820,074	-				+0.3
1,820,074	-				+0.3
1,820,074	-				+0.4
1,820,074	-				-1.2
1,820,074	-				-1.0
1,820,074	-				+0.9
1,820,074	-				+1.5
1,820,074	-				-0.5
1,820,162	+		LRK54_RS08350	0.13	-1.0
1,820,162	+		LRK54_RS08350	0.13	+0.3
1,820,162	+		LRK54_RS08350	0.13	+1.1
1,820,163	-		LRK54_RS08350	0.13	-0.9
1,820,163	-		LRK54_RS08350	0.13	+1.2
1,820,163	-		LRK54_RS08350	0.13	-1.9
1,820,163	-		LRK54_RS08350	0.13	+0.2
1,820,163	-		LRK54_RS08350	0.13	-0.8
1,820,163	-		LRK54_RS08350	0.13	+0.6
1,820,164	+		LRK54_RS08350	0.13	-1.2
1,820,164	+		LRK54_RS08350	0.13	-0.5
1,820,164	+		LRK54_RS08350	0.13	-0.1
1,820,164	+		LRK54_RS08350	0.13	+0.3
1,820,164	+		LRK54_RS08350	0.13	-0.8
1,820,164	+		LRK54_RS08350	0.13	-0.4
1,820,164	+		LRK54_RS08350	0.13	+0.6
1,820,164	+		LRK54_RS08350	0.13	-0.8
1,820,164	+		LRK54_RS08350	0.13	-0.3
1,820,164	+		LRK54_RS08350	0.13	-1.0
1,820,164	+		LRK54_RS08350	0.13	+0.7
1,820,164	+		LRK54_RS08350	0.13	+0.2
1,820,164	+		LRK54_RS08350	0.13	+0.2
1,820,164	+		LRK54_RS08350	0.13	-0.5
1,820,164	+		LRK54_RS08350	0.13	-0.3
1,820,164	+		LRK54_RS08350	0.13	-0.9
1,820,164	+		LRK54_RS08350	0.13	-0.4
1,820,164	+		LRK54_RS08350	0.13	+0.7
1,820,164	+		LRK54_RS08350	0.13	-0.8
1,820,165	-		LRK54_RS08350	0.13	-0.5
1,820,165	-		LRK54_RS08350	0.13	+0.7
1,820,165	-		LRK54_RS08350	0.13	-2.3
1,820,165	-		LRK54_RS08350	0.13	-1.6
1,820,165	-		LRK54_RS08350	0.13	-0.3
1,820,165	-		LRK54_RS08350	0.13	+0.3
1,820,165	-		LRK54_RS08350	0.13	+0.0
1,820,165	-		LRK54_RS08350	0.13	+0.4
1,820,165	-		LRK54_RS08350	0.13	-0.1
1,820,165	-		LRK54_RS08350	0.13	-1.5
1,820,165	-		LRK54_RS08350	0.13	+0.3
1,820,165	-		LRK54_RS08350	0.13	-0.4
1,820,269	+		LRK54_RS08350	0.30	+0.0
1,820,269	+		LRK54_RS08350	0.30	+0.1
1,820,317	+		LRK54_RS08350	0.37	-0.7
1,820,317	+		LRK54_RS08350	0.37	-0.2
1,820,318	-		LRK54_RS08350	0.37	-0.9
1,820,318	-		LRK54_RS08350	0.37	+1.7
1,820,318	-		LRK54_RS08350	0.37	-0.0
1,820,318	-		LRK54_RS08350	0.37	+0.2
1,820,318	-		LRK54_RS08350	0.37	-0.6
1,820,401	+		LRK54_RS08350	0.50	+0.3
1,820,401	+		LRK54_RS08350	0.50	-0.8
1,820,401	+		LRK54_RS08350	0.50	-1.0
1,820,401	+		LRK54_RS08350	0.50	+0.7
1,820,401	+		LRK54_RS08350	0.50	+0.1
1,820,401	+		LRK54_RS08350	0.50	-0.7
1,820,401	+		LRK54_RS08350	0.50	-0.8
1,820,401	+		LRK54_RS08350	0.50	-1.0
1,820,401	+		LRK54_RS08350	0.50	-0.4
1,820,401	+		LRK54_RS08350	0.50	+1.0
1,820,401	+		LRK54_RS08350	0.50	-0.3
1,820,402	-		LRK54_RS08350	0.51	+0.8
1,820,402	-		LRK54_RS08350	0.51	+0.8
1,820,402	-		LRK54_RS08350	0.51	+0.8
1,820,402	-		LRK54_RS08350	0.51	+1.7
1,820,402	-		LRK54_RS08350	0.51	+1.6
1,820,402	-		LRK54_RS08350	0.51	+0.4
1,820,402	-		LRK54_RS08350	0.51	+0.3
1,820,402	-		LRK54_RS08350	0.51	+1.7
1,820,402	-		LRK54_RS08350	0.51	+1.2
1,820,402	-		LRK54_RS08350	0.51	+2.1
1,820,402	-		LRK54_RS08350	0.51	+0.2
1,820,402	-		LRK54_RS08350	0.51	-1.4
1,820,422	+		LRK54_RS08350	0.54	-1.5
1,820,422	+		LRK54_RS08350	0.54	-0.0
1,820,423	-		LRK54_RS08350	0.54	+0.7
1,820,423	-		LRK54_RS08350	0.54	+1.6
1,820,424	-		LRK54_RS08350	0.54	+0.2
1,820,474	-		LRK54_RS08350	0.62	-2.8
1,820,474	-		LRK54_RS08350	0.62	-0.4
1,820,488	+		LRK54_RS08350	0.64	-1.9
1,820,488	+		LRK54_RS08350	0.64	+1.3
1,820,488	+		LRK54_RS08350	0.64	-0.3
1,820,488	+		LRK54_RS08350	0.64	+0.0
1,820,488	+		LRK54_RS08350	0.64	+1.3
1,820,488	+		LRK54_RS08350	0.64	-0.3
1,820,488	+		LRK54_RS08350	0.64	+0.1
1,820,488	+		LRK54_RS08350	0.64	+1.5
1,820,488	+		LRK54_RS08350	0.64	+0.8
1,820,488	+		LRK54_RS08350	0.64	-0.9
1,820,488	+		LRK54_RS08350	0.64	-0.4
1,820,488	+		LRK54_RS08350	0.64	-0.0
1,820,488	+		LRK54_RS08350	0.64	-0.3
1,820,488	+		LRK54_RS08350	0.64	-0.4
1,820,488	+		LRK54_RS08350	0.64	+0.3
1,820,488	+		LRK54_RS08350	0.64	-0.4
1,820,488	+		LRK54_RS08350	0.64	-2.0
1,820,488	+		LRK54_RS08350	0.64	-0.3
1,820,489	-		LRK54_RS08350	0.64	+0.0
1,820,489	-		LRK54_RS08350	0.64	+1.1
1,820,489	-		LRK54_RS08350	0.64	+1.0
1,820,489	-		LRK54_RS08350	0.64	-0.7
1,820,489	-		LRK54_RS08350	0.64	+0.7
1,820,489	-		LRK54_RS08350	0.64	+0.3
1,820,489	-		LRK54_RS08350	0.64	+1.6
1,820,489	-		LRK54_RS08350	0.64	+1.0
1,820,489	-		LRK54_RS08350	0.64	+1.3
1,820,489	-		LRK54_RS08350	0.64	+0.7
1,820,489	-		LRK54_RS08350	0.64	-1.3
1,820,489	-		LRK54_RS08350	0.64	-0.2
1,820,489	-		LRK54_RS08350	0.64	+2.8
1,820,489	-		LRK54_RS08350	0.64	+0.3
1,820,489	-		LRK54_RS08350	0.64	+0.3
1,820,489	-		LRK54_RS08350	0.64	+2.1
1,820,489	-		LRK54_RS08350	0.64	+1.3
1,820,489	-		LRK54_RS08350	0.64	+2.3
1,820,572	+		LRK54_RS08350	0.77	+0.5
1,820,572	+		LRK54_RS08350	0.77	-0.0
1,820,572	+		LRK54_RS08350	0.77	-0.7
1,820,573	-		LRK54_RS08350	0.78	+0.6
1,820,573	-		LRK54_RS08350	0.78	+1.0
1,820,573	-		LRK54_RS08350	0.78	-1.2
1,820,573	-		LRK54_RS08350	0.78	+0.1
1,820,573	-		LRK54_RS08350	0.78	-0.5
1,820,573	-		LRK54_RS08350	0.78	-1.3
1,820,573	-		LRK54_RS08350	0.78	-1.0
1,820,573	-		LRK54_RS08350	0.78	-0.3
1,820,573	-		LRK54_RS08350	0.78	-0.5
1,820,573	-		LRK54_RS08350	0.78	+0.3
1,820,623	+		LRK54_RS08350	0.85	-1.6
1,820,623	+		LRK54_RS08350	0.85	-0.0
1,820,623	+		LRK54_RS08350	0.85	-0.2
1,820,623	+		LRK54_RS08350	0.85	-1.3
1,820,623	+		LRK54_RS08350	0.85	-0.1
1,820,623	+		LRK54_RS08350	0.85	-0.0
1,820,624	-		LRK54_RS08350	0.86	-0.3
1,820,624	-		LRK54_RS08350	0.86	+0.5
1,820,981	+		LRK54_RS08355	0.59	-1.3
1,820,981	+		LRK54_RS08355	0.59	-0.2
1,820,981	+		LRK54_RS08355	0.59	-0.1
1,820,981	+		LRK54_RS08355	0.59	-1.0
1,820,981	+		LRK54_RS08355	0.59	-1.3
1,820,981	+		LRK54_RS08355	0.59	-0.7
1,820,981	+		LRK54_RS08355	0.59	-0.2
1,820,981	+		LRK54_RS08355	0.59	-0.9
1,820,981	+		LRK54_RS08355	0.59	-2.4
1,820,981	+		LRK54_RS08355	0.59	+0.0
1,820,981	+		LRK54_RS08355	0.59	-0.7
1,820,981	+		LRK54_RS08355	0.59	+0.4
1,820,981	+		LRK54_RS08355	0.59	-0.1
1,820,981	+		LRK54_RS08355	0.59	-1.4
1,820,981	+		LRK54_RS08355	0.59	+1.3
1,820,981	+		LRK54_RS08355	0.59	-0.6
1,820,981	+		LRK54_RS08355	0.59	+0.8
1,820,981	+		LRK54_RS08355	0.59	-0.9
1,820,981	+		LRK54_RS08355	0.59	+0.5
1,820,981	+		LRK54_RS08355	0.59	+0.7
1,820,981	+		LRK54_RS08355	0.59	-0.0
1,820,981	+		LRK54_RS08355	0.59	-0.3
1,820,981	+		LRK54_RS08355	0.59	-2.2
1,820,981	+		LRK54_RS08355	0.59	-0.9
1,820,982	-		LRK54_RS08355	0.59	+1.7
1,820,982	-		LRK54_RS08355	0.59	-0.2
1,820,982	-		LRK54_RS08355	0.59	+0.2
1,820,982	-		LRK54_RS08355	0.59	-0.6
1,820,982	-		LRK54_RS08355	0.59	+0.2
1,820,982	-		LRK54_RS08355	0.59	+1.0
1,820,982	-		LRK54_RS08355	0.59	+0.5
1,820,982	-		LRK54_RS08355	0.59	+2.3
1,820,982	-		LRK54_RS08355	0.59	+0.0
1,820,982	-		LRK54_RS08355	0.59	+0.6
1,820,982	-		LRK54_RS08355	0.59	+1.0
1,820,982	-		LRK54_RS08355	0.59	-1.0
1,820,982	-		LRK54_RS08355	0.59	-0.4
1,820,982	-		LRK54_RS08355	0.59	+0.4
1,820,982	-		LRK54_RS08355	0.59	-0.3
1,820,982	-		LRK54_RS08355	0.59	-0.8
1,820,982	-		LRK54_RS08355	0.59	+0.8
1,820,982	-		LRK54_RS08355	0.59	-0.1
1,820,982	-		LRK54_RS08355	0.59	-0.4
1,820,982	-		LRK54_RS08355	0.59	+0.6
1,820,982	-		LRK54_RS08355	0.59	-0.4
1,820,982	-		LRK54_RS08355	0.59	+0.3
1,820,982	-		LRK54_RS08355	0.59	+0.6
1,820,982	-		LRK54_RS08355	0.59	-0.5
1,820,982	-		LRK54_RS08355	0.59	-0.5
1,821,011	+		LRK54_RS08355	0.75	+0.4
1,821,011	+		LRK54_RS08355	0.75	-0.4
1,821,011	+		LRK54_RS08355	0.75	-0.3
1,821,011	+		LRK54_RS08355	0.75	+0.8
1,821,011	+		LRK54_RS08355	0.75	-1.3
1,821,011	+		LRK54_RS08355	0.75	-0.1
1,821,011	+		LRK54_RS08355	0.75	+0.8
1,821,011	+		LRK54_RS08355	0.75	-0.1
1,821,011	+		LRK54_RS08355	0.75	-2.8
1,821,012	-		LRK54_RS08355	0.75	-0.6
1,821,012	-		LRK54_RS08355	0.75	-0.4
1,821,012	-		LRK54_RS08355	0.75	-2.3
1,821,012	-		LRK54_RS08355	0.75	-0.5
1,821,012	-		LRK54_RS08355	0.75	+0.3
1,821,012	-		LRK54_RS08355	0.75	-0.0
1,821,012	-		LRK54_RS08355	0.75	-1.2
1,821,012	-		LRK54_RS08355	0.75	+0.4
1,821,012	-		LRK54_RS08355	0.75	+0.1
1,821,023	+		LRK54_RS08355	0.81	+0.6
1,821,023	+		LRK54_RS08355	0.81	+0.4
1,821,024	-		LRK54_RS08355	0.82	-0.3
1,821,024	-		LRK54_RS08355	0.82	+0.1
1,821,024	-		LRK54_RS08355	0.82	+0.6
1,821,046	+				-0.5
1,821,132	+		LRK54_RS08360	0.10	-1.2
1,821,159	+		LRK54_RS08360	0.15	-0.4
1,821,159	+		LRK54_RS08360	0.15	+1.0
1,821,159	+		LRK54_RS08360	0.15	-0.7
1,821,159	+		LRK54_RS08360	0.15	-1.3
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