Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08345

Experiment: R2A with arsenate 15.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with arsenate 15.625 mM
1,818,340	+		LRK54_RS08340	0.53	-0.9
1,818,340	+		LRK54_RS08340	0.53	-3.3
1,818,340	+		LRK54_RS08340	0.53	-2.3
1,818,340	+		LRK54_RS08340	0.53	+0.1
1,818,340	+		LRK54_RS08340	0.53	+0.6
1,818,341	-		LRK54_RS08340	0.53	+0.4
1,818,341	-		LRK54_RS08340	0.53	+0.9
1,818,341	-		LRK54_RS08340	0.53	-0.6
1,818,341	-		LRK54_RS08340	0.53	-0.6
1,818,341	-		LRK54_RS08340	0.53	-1.1
1,818,341	-		LRK54_RS08340	0.53	-0.8
1,818,341	-		LRK54_RS08340	0.53	-0.4
1,818,361	+		LRK54_RS08340	0.54	+0.4
1,818,361	+		LRK54_RS08340	0.54	-1.2
1,818,361	+		LRK54_RS08340	0.54	-0.7
1,818,361	+		LRK54_RS08340	0.54	+2.0
1,818,361	+		LRK54_RS08340	0.54	-0.5
1,818,362	-		LRK54_RS08340	0.54	-1.2
1,818,362	-		LRK54_RS08340	0.54	+0.3
1,818,362	-		LRK54_RS08340	0.54	+0.4
1,818,362	-		LRK54_RS08340	0.54	+0.7
1,818,362	-		LRK54_RS08340	0.54	-0.1
1,818,421	+		LRK54_RS08340	0.58	+2.0
1,818,421	+		LRK54_RS08340	0.58	-0.4
1,818,421	+		LRK54_RS08340	0.58	-0.4
1,818,421	+		LRK54_RS08340	0.58	+0.5
1,818,421	+		LRK54_RS08340	0.58	-1.3
1,818,421	+		LRK54_RS08340	0.58	-0.5
1,818,421	+		LRK54_RS08340	0.58	+1.3
1,818,421	+		LRK54_RS08340	0.58	+1.0
1,818,421	+		LRK54_RS08340	0.58	-1.4
1,818,421	+		LRK54_RS08340	0.58	-1.2
1,818,421	+		LRK54_RS08340	0.58	-0.5
1,818,421	+		LRK54_RS08340	0.58	+0.0
1,818,421	+		LRK54_RS08340	0.58	-1.6
1,818,421	+		LRK54_RS08340	0.58	+0.2
1,818,421	+		LRK54_RS08340	0.58	-0.0
1,818,421	+		LRK54_RS08340	0.58	-0.9
1,818,421	+		LRK54_RS08340	0.58	-1.6
1,818,421	+		LRK54_RS08340	0.58	-2.2
1,818,421	+		LRK54_RS08340	0.58	+0.8
1,818,421	+		LRK54_RS08340	0.58	+1.1
1,818,421	+		LRK54_RS08340	0.58	+0.3
1,818,421	+		LRK54_RS08340	0.58	-0.3
1,818,421	+		LRK54_RS08340	0.58	-0.3
1,818,421	+		LRK54_RS08340	0.58	+1.8
1,818,421	+		LRK54_RS08340	0.58	-0.9
1,818,421	+		LRK54_RS08340	0.58	-0.8
1,818,422	-		LRK54_RS08340	0.58	-2.7
1,818,422	-		LRK54_RS08340	0.58	-0.6
1,818,422	-		LRK54_RS08340	0.58	-1.2
1,818,422	-		LRK54_RS08340	0.58	+0.1
1,818,422	-		LRK54_RS08340	0.58	-0.0
1,818,422	-		LRK54_RS08340	0.58	+2.3
1,818,422	-		LRK54_RS08340	0.58	-0.9
1,818,422	-		LRK54_RS08340	0.58	-0.9
1,818,422	-		LRK54_RS08340	0.58	-0.3
1,818,422	-		LRK54_RS08340	0.58	+0.2
1,818,422	-		LRK54_RS08340	0.58	-0.5
1,818,422	-		LRK54_RS08340	0.58	+0.2
1,818,422	-		LRK54_RS08340	0.58	+0.1
1,818,422	-		LRK54_RS08340	0.58	-0.3
1,818,422	-		LRK54_RS08340	0.58	+0.7
1,818,422	-		LRK54_RS08340	0.58	-0.5
1,818,422	-		LRK54_RS08340	0.58	-1.4
1,818,422	-		LRK54_RS08340	0.58	-0.6
1,818,422	-		LRK54_RS08340	0.58	+0.2
1,818,422	-		LRK54_RS08340	0.58	-0.4
1,818,422	-		LRK54_RS08340	0.58	-0.7
1,818,422	-		LRK54_RS08340	0.58	+0.1
1,818,422	-		LRK54_RS08340	0.58	+0.0
1,818,422	-		LRK54_RS08340	0.58	+0.1
1,818,422	-		LRK54_RS08340	0.58	+0.4
1,818,422	-		LRK54_RS08340	0.58	-0.2
1,818,422	-		LRK54_RS08340	0.58	-1.6
1,818,422	-		LRK54_RS08340	0.58	+0.8
1,818,422	-		LRK54_RS08340	0.58	-1.1
1,818,422	-		LRK54_RS08340	0.58	-1.7
1,818,454	+		LRK54_RS08340	0.60	+1.0
1,818,455	-		LRK54_RS08340	0.60	-1.1
1,818,455	-		LRK54_RS08340	0.60	-1.0
1,818,556	+		LRK54_RS08340	0.65	+0.7
1,818,556	+		LRK54_RS08340	0.65	+0.8
1,818,556	+		LRK54_RS08340	0.65	-1.1
1,818,556	+		LRK54_RS08340	0.65	-2.6
1,818,556	+		LRK54_RS08340	0.65	-1.0
1,818,556	+		LRK54_RS08340	0.65	-0.2
1,818,556	+		LRK54_RS08340	0.65	-0.5
1,818,556	+		LRK54_RS08340	0.65	+1.5
1,818,556	+		LRK54_RS08340	0.65	-1.3
1,818,556	+		LRK54_RS08340	0.65	+0.1
1,818,556	+		LRK54_RS08340	0.65	-1.3
1,818,556	+		LRK54_RS08340	0.65	+1.6
1,818,556	+		LRK54_RS08340	0.65	+1.6
1,818,556	+		LRK54_RS08340	0.65	+1.1
1,818,556	+		LRK54_RS08340	0.65	-0.3
1,818,556	+		LRK54_RS08340	0.65	-0.0
1,818,556	+		LRK54_RS08340	0.65	-0.3
1,818,556	+		LRK54_RS08340	0.65	-0.0
1,818,556	+		LRK54_RS08340	0.65	-0.5
1,818,557	-		LRK54_RS08340	0.65	+0.3
1,818,557	-		LRK54_RS08340	0.65	-0.1
1,818,557	-		LRK54_RS08340	0.65	-0.0
1,818,557	-		LRK54_RS08340	0.65	+0.3
1,818,557	-		LRK54_RS08340	0.65	+0.1
1,818,557	-		LRK54_RS08340	0.65	-1.0
1,818,557	-		LRK54_RS08340	0.65	+0.8
1,818,557	-		LRK54_RS08340	0.65	-0.5
1,818,557	-		LRK54_RS08340	0.65	+0.6
1,818,557	-		LRK54_RS08340	0.65	-0.3
1,818,557	-		LRK54_RS08340	0.65	-0.4
1,818,557	-		LRK54_RS08340	0.65	+1.4
1,818,557	-		LRK54_RS08340	0.65	-2.2
1,818,557	-		LRK54_RS08340	0.65	+0.1
1,818,557	-		LRK54_RS08340	0.65	+0.3
1,818,557	-		LRK54_RS08340	0.65	+1.7
1,818,557	-		LRK54_RS08340	0.65	-1.5
1,818,557	-		LRK54_RS08340	0.65	+1.4
1,818,557	-		LRK54_RS08340	0.65	-1.2
1,818,557	-		LRK54_RS08340	0.65	-1.5
1,818,691	+		LRK54_RS08340	0.73	-0.5
1,818,691	+		LRK54_RS08340	0.73	+0.0
1,818,691	+		LRK54_RS08340	0.73	+0.4
1,818,691	+		LRK54_RS08340	0.73	+0.0
1,818,691	+		LRK54_RS08340	0.73	-0.7
1,818,691	+		LRK54_RS08340	0.73	-0.5
1,818,692	-		LRK54_RS08340	0.73	-1.4
1,818,692	-		LRK54_RS08340	0.73	-0.3
1,818,692	-		LRK54_RS08340	0.73	+1.9
1,818,692	-		LRK54_RS08340	0.73	+0.0
1,818,692	-		LRK54_RS08340	0.73	-0.1
1,818,692	-		LRK54_RS08340	0.73	-0.7
1,818,692	-		LRK54_RS08340	0.73	-0.6
1,818,692	-		LRK54_RS08340	0.73	+0.3
1,818,721	+		LRK54_RS08340	0.74	-2.0
1,818,721	+		LRK54_RS08340	0.74	+0.3
1,818,721	+		LRK54_RS08340	0.74	+0.4
1,818,721	+		LRK54_RS08340	0.74	-0.0
1,818,722	-		LRK54_RS08340	0.74	+0.1
1,818,722	-		LRK54_RS08340	0.74	-0.3
1,818,722	-		LRK54_RS08340	0.74	-1.0
1,818,722	-		LRK54_RS08340	0.74	-1.3
1,818,722	-		LRK54_RS08340	0.74	-0.6
1,818,730	+		LRK54_RS08340	0.75	-0.4
1,818,730	+		LRK54_RS08340	0.75	+0.7
1,818,730	+		LRK54_RS08340	0.75	-1.6
1,818,731	-		LRK54_RS08340	0.75	+0.5
1,818,731	-		LRK54_RS08340	0.75	+0.2
1,818,769	+		LRK54_RS08340	0.77	-2.5
1,818,769	+		LRK54_RS08340	0.77	-1.0
1,818,769	+		LRK54_RS08340	0.77	-0.3
1,818,769	+		LRK54_RS08340	0.77	+0.1
1,818,769	+		LRK54_RS08340	0.77	+0.0
1,818,770	-		LRK54_RS08340	0.77	-0.1
1,818,770	-		LRK54_RS08340	0.77	-0.5
1,818,770	-		LRK54_RS08340	0.77	-1.0
1,818,770	-		LRK54_RS08340	0.77	+0.0
1,818,770	-		LRK54_RS08340	0.77	-0.0
1,818,770	-		LRK54_RS08340	0.77	-0.0
1,818,865	+		LRK54_RS08340	0.82	+0.9
1,818,865	+		LRK54_RS08340	0.82	-0.1
1,818,865	+		LRK54_RS08340	0.82	-0.3
1,818,865	+		LRK54_RS08340	0.82	-2.1
1,818,865	+		LRK54_RS08340	0.82	+0.1
1,818,866	-		LRK54_RS08340	0.82	-1.1
1,818,866	-		LRK54_RS08340	0.82	-0.1
1,818,866	-		LRK54_RS08340	0.82	-0.8
1,818,866	-		LRK54_RS08340	0.82	-2.2
1,818,874	+		LRK54_RS08340	0.83	-1.1
1,818,874	+		LRK54_RS08340	0.83	+1.3
1,818,874	+		LRK54_RS08340	0.83	-1.4
1,818,874	+		LRK54_RS08340	0.83	-1.6
1,818,874	+		LRK54_RS08340	0.83	-1.2
1,818,874	+		LRK54_RS08340	0.83	-0.1
1,818,874	+		LRK54_RS08340	0.83	+0.2
1,818,874	+		LRK54_RS08340	0.83	+0.2
1,818,874	+		LRK54_RS08340	0.83	+0.5
1,818,875	-		LRK54_RS08340	0.83	-0.2
1,818,875	-		LRK54_RS08340	0.83	+0.8
1,818,875	-		LRK54_RS08340	0.83	-0.9
1,818,875	-		LRK54_RS08340	0.83	+0.5
1,818,875	-		LRK54_RS08340	0.83	-0.2
1,818,875	-		LRK54_RS08340	0.83	+0.7
1,818,875	-		LRK54_RS08340	0.83	-0.4
1,818,875	-		LRK54_RS08340	0.83	-0.5
1,818,875	-		LRK54_RS08340	0.83	+0.2
1,818,875	-		LRK54_RS08340	0.83	-0.9
1,818,875	-		LRK54_RS08340	0.83	-0.3
1,818,875	-		LRK54_RS08340	0.83	+0.3
1,818,875	-		LRK54_RS08340	0.83	-2.1
1,818,897	+		LRK54_RS08340	0.84	+0.1
1,818,946	+		LRK54_RS08340	0.87	+0.7
1,818,946	+		LRK54_RS08340	0.87	-1.1
1,818,947	-		LRK54_RS08340	0.87	+0.0
1,818,947	-		LRK54_RS08340	0.87	-0.6
1,819,066	+				+0.1
1,819,066	+				-0.2
1,819,066	+				-0.3
1,819,067	-				+1.0
1,819,067	-				+1.6
1,819,067	-				-1.9
1,819,067	-				-0.5
1,819,067	-				+0.0
1,819,067	-				-0.0
1,819,067	-				+0.3
1,819,067	-				-0.2
1,819,067	-				-0.5
1,819,067	-				-0.5
1,819,067	-				+1.6
1,819,067	-				-0.0
1,819,067	-				-2.2
1,819,067	-				+0.7
1,819,067	-				-0.5
1,819,067	-				+0.5
1,819,067	-				-1.2
1,819,067	-				+0.0
1,819,067	-				+0.8
1,819,067	-				-0.4
1,819,067	-				-1.8
1,819,067	-				-1.1
1,819,067	-				-0.6
1,819,067	-				-1.0
1,819,067	-				+0.4
1,819,067	-				+0.1
1,819,067	-				-1.3
1,819,067	-				-0.5
1,819,067	-				-0.7
1,819,067	-				-0.9
1,819,258	+				-1.5
1,819,259	-				+0.1
1,819,259	-				+0.2
1,819,259	-				-0.0
1,819,259	-				+0.1
1,819,348	+				-0.5
1,819,348	+				+0.3
1,819,348	+				-0.6
1,819,348	+				-0.4
1,819,348	+				+0.5
1,819,349	-				+0.6
1,819,349	-				-0.4
1,819,349	-				+0.3
1,819,349	-				+0.1
1,819,349	-				-0.9
1,819,349	-				-0.0
1,819,349	-				-0.8
1,819,349	-				+1.1
1,819,349	-				-0.3
1,819,406	+		LRK54_RS08345	0.14	+0.2
1,819,406	+		LRK54_RS08345	0.14	+0.5
1,819,406	+		LRK54_RS08345	0.14	-0.7
1,819,406	+		LRK54_RS08345	0.14	+2.1
1,819,406	+		LRK54_RS08345	0.14	+0.3
1,819,406	+		LRK54_RS08345	0.14	-0.3
1,819,406	+		LRK54_RS08345	0.14	-0.0
1,819,407	-		LRK54_RS08345	0.14	+0.0
1,819,407	-		LRK54_RS08345	0.14	+1.2
1,819,407	-		LRK54_RS08345	0.14	-0.4
1,819,407	-		LRK54_RS08345	0.14	-0.5
1,819,407	-		LRK54_RS08345	0.14	-0.3
1,819,407	-		LRK54_RS08345	0.14	-0.0
1,819,407	-		LRK54_RS08345	0.14	-0.8
1,819,407	-		LRK54_RS08345	0.14	-1.3
1,819,407	-		LRK54_RS08345	0.14	+0.3
1,819,407	-		LRK54_RS08345	0.14	-0.2
1,819,543	+		LRK54_RS08345	0.33	+1.3
1,819,543	+		LRK54_RS08345	0.33	-0.4
1,819,544	-		LRK54_RS08345	0.33	-0.8
1,819,544	-		LRK54_RS08345	0.33	-0.5
1,819,544	-		LRK54_RS08345	0.33	-0.2
1,819,544	-		LRK54_RS08345	0.33	-0.6
1,819,544	-		LRK54_RS08345	0.33	+0.4
1,819,619	-		LRK54_RS08345	0.44	-0.8
1,819,619	-		LRK54_RS08345	0.44	-0.5
1,819,652	+		LRK54_RS08345	0.49	-0.0
1,819,653	-		LRK54_RS08345	0.49	-0.3
1,819,837	+		LRK54_RS08345	0.75	-0.3
1,819,837	+		LRK54_RS08345	0.75	+0.0
1,819,837	+		LRK54_RS08345	0.75	+1.1
1,819,837	+		LRK54_RS08345	0.75	-0.3
1,819,837	+		LRK54_RS08345	0.75	-0.3
1,819,837	+		LRK54_RS08345	0.75	-0.2
1,819,838	-		LRK54_RS08345	0.75	+1.1
1,819,838	-		LRK54_RS08345	0.75	-0.0
1,819,838	-		LRK54_RS08345	0.75	+0.0
1,819,838	-		LRK54_RS08345	0.75	+0.7
1,819,900	+		LRK54_RS08345	0.84	-0.5
1,819,901	-		LRK54_RS08345	0.84	+1.4
1,819,901	-		LRK54_RS08345	0.84	+0.7
1,819,901	-		LRK54_RS08345	0.84	+1.5
1,819,901	-		LRK54_RS08345	0.84	+0.2
1,819,958	+				-0.9
1,820,016	+				-2.0
1,820,016	+				-0.1
1,820,016	+				-0.5
1,820,016	+				-0.4
1,820,016	+				+0.2
1,820,016	+				+1.6
1,820,016	+				+0.0
1,820,016	+				+1.6
1,820,016	+				-0.0
1,820,016	+				-0.1
1,820,016	+				-0.8
1,820,016	+				-0.4
1,820,016	+				+3.3
1,820,016	+				+0.7
1,820,016	+				-0.2
1,820,016	+				+0.6
1,820,016	+				-0.0
1,820,016	+				+1.0
1,820,016	+				-0.3
1,820,016	+				-1.0
1,820,016	+				-0.9
1,820,016	+				+1.7
1,820,016	+				-2.5
1,820,016	+				-1.2
1,820,016	+				+0.3
1,820,016	+				+0.7
1,820,016	+				+0.3
1,820,016	+				+1.0
1,820,016	+				-0.7
1,820,016	+				+1.1
1,820,016	+				-0.6
1,820,016	+				-0.7
1,820,016	+				+0.2
1,820,016	+				-2.6
1,820,016	+				-1.2
1,820,016	+				+0.2
1,820,016	+				-1.5
1,820,016	+				-0.9
1,820,016	+				-0.6
1,820,016	+				+0.3
1,820,016	+				+0.8
1,820,016	+				+0.7
1,820,016	+				+0.2
1,820,016	+				-0.7
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