Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24350 and EX31_RS24355 are separated by 9 nucleotides EX31_RS24355 and EX31_RS24360 are separated by 29 nucleotides
EX31_RS24350: EX31_RS24350 - efflux RND transporter periplasmic adaptor subunit, at 635,599 to 636,741
_RS24350
EX31_RS24355: EX31_RS24355 - multidrug efflux RND transporter permease subunit, at 636,751 to 639,846
_RS24355
EX31_RS24360: EX31_RS24360 - AI-2E family transporter, at 639,876 to 640,919
_RS24360
Position (kb) 636
637
638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 635.857 kb on + strand, within EX31_RS24350 at 635.928 kb on + strand, within EX31_RS24350 at 635.964 kb on - strand, within EX31_RS24350 at 636.089 kb on + strand, within EX31_RS24350 at 636.089 kb on + strand, within EX31_RS24350 at 636.089 kb on + strand, within EX31_RS24350 at 636.089 kb on + strand, within EX31_RS24350 at 636.090 kb on - strand, within EX31_RS24350 at 636.090 kb on - strand, within EX31_RS24350 at 636.094 kb on + strand, within EX31_RS24350 at 636.094 kb on + strand, within EX31_RS24350 at 636.094 kb on + strand, within EX31_RS24350 at 636.094 kb on + strand, within EX31_RS24350 at 636.095 kb on - strand, within EX31_RS24350 at 636.095 kb on - strand, within EX31_RS24350 at 636.095 kb on - strand, within EX31_RS24350 at 636.096 kb on + strand, within EX31_RS24350 at 636.334 kb on + strand, within EX31_RS24350 at 636.334 kb on + strand, within EX31_RS24350 at 636.334 kb on + strand, within EX31_RS24350 at 636.334 kb on + strand, within EX31_RS24350 at 636.334 kb on + strand, within EX31_RS24350 at 636.334 kb on + strand, within EX31_RS24350 at 636.335 kb on - strand, within EX31_RS24350 at 636.335 kb on - strand, within EX31_RS24350 at 636.336 kb on + strand, within EX31_RS24350 at 636.336 kb on + strand, within EX31_RS24350 at 636.336 kb on + strand, within EX31_RS24350 at 636.336 kb on + strand, within EX31_RS24350 at 636.336 kb on + strand, within EX31_RS24350 at 636.336 kb on + strand, within EX31_RS24350 at 636.337 kb on - strand, within EX31_RS24350 at 636.337 kb on - strand, within EX31_RS24350 at 636.372 kb on + strand, within EX31_RS24350 at 636.372 kb on + strand, within EX31_RS24350 at 636.373 kb on - strand, within EX31_RS24350 at 636.610 kb on + strand, within EX31_RS24350 at 636.746 kb on + strand at 636.765 kb on + strand at 636.769 kb on - strand at 636.892 kb on - strand at 636.920 kb on + strand at 636.969 kb on + strand at 636.979 kb on + strand at 636.979 kb on + strand at 636.979 kb on + strand at 636.979 kb on + strand at 636.979 kb on + strand at 636.979 kb on + strand at 636.979 kb on + strand at 636.980 kb on - strand at 636.980 kb on - strand at 636.980 kb on - strand at 636.980 kb on - strand at 636.980 kb on - strand at 636.980 kb on - strand at 636.980 kb on - strand at 636.980 kb on - strand at 636.981 kb on + strand at 636.981 kb on + strand at 636.981 kb on + strand at 636.981 kb on + strand at 636.982 kb on - strand at 636.982 kb on - strand at 636.982 kb on - strand at 637.012 kb on + strand at 637.013 kb on - strand at 637.013 kb on - strand at 637.013 kb on - strand at 637.024 kb on - strand at 637.024 kb on - strand at 637.024 kb on - strand at 637.026 kb on + strand at 637.070 kb on + strand, within EX31_RS24355 at 637.152 kb on + strand, within EX31_RS24355 at 637.152 kb on + strand, within EX31_RS24355 at 637.152 kb on + strand, within EX31_RS24355 at 637.152 kb on + strand, within EX31_RS24355 at 637.155 kb on + strand, within EX31_RS24355 at 637.209 kb on + strand, within EX31_RS24355 at 637.297 kb on + strand, within EX31_RS24355 at 637.309 kb on - strand, within EX31_RS24355 at 637.309 kb on - strand, within EX31_RS24355 at 637.309 kb on - strand, within EX31_RS24355 at 637.501 kb on - strand, within EX31_RS24355 at 637.501 kb on - strand, within EX31_RS24355 at 637.510 kb on - strand, within EX31_RS24355 at 637.716 kb on + strand, within EX31_RS24355 at 637.717 kb on - strand, within EX31_RS24355 at 637.720 kb on + strand, within EX31_RS24355 at 637.720 kb on + strand, within EX31_RS24355 at 637.819 kb on + strand, within EX31_RS24355 at 637.881 kb on - strand, within EX31_RS24355 at 637.903 kb on + strand, within EX31_RS24355 at 637.903 kb on + strand, within EX31_RS24355 at 637.904 kb on - strand, within EX31_RS24355 at 637.915 kb on + strand, within EX31_RS24355 at 637.947 kb on + strand, within EX31_RS24355 at 638.091 kb on + strand, within EX31_RS24355 at 638.139 kb on + strand, within EX31_RS24355 at 638.143 kb on - strand, within EX31_RS24355 at 638.202 kb on + strand, within EX31_RS24355 at 638.289 kb on + strand, within EX31_RS24355 at 638.290 kb on - strand, within EX31_RS24355 at 638.320 kb on + strand, within EX31_RS24355 at 638.320 kb on + strand, within EX31_RS24355 at 638.320 kb on + strand, within EX31_RS24355 at 638.321 kb on - strand, within EX31_RS24355 at 638.321 kb on - strand, within EX31_RS24355 at 638.346 kb on + strand, within EX31_RS24355 at 638.346 kb on + strand, within EX31_RS24355 at 638.346 kb on + strand, within EX31_RS24355 at 638.370 kb on - strand, within EX31_RS24355 at 638.399 kb on + strand, within EX31_RS24355 at 638.474 kb on + strand, within EX31_RS24355 at 638.474 kb on + strand, within EX31_RS24355 at 638.492 kb on + strand, within EX31_RS24355 at 638.493 kb on - strand, within EX31_RS24355 at 638.493 kb on - strand, within EX31_RS24355 at 638.532 kb on + strand, within EX31_RS24355 at 638.726 kb on + strand, within EX31_RS24355 at 638.750 kb on + strand, within EX31_RS24355 at 638.774 kb on + strand, within EX31_RS24355 at 638.774 kb on + strand, within EX31_RS24355 at 638.942 kb on + strand, within EX31_RS24355 at 638.943 kb on - strand, within EX31_RS24355 at 638.943 kb on - strand, within EX31_RS24355 at 639.181 kb on + strand, within EX31_RS24355 at 639.182 kb on - strand, within EX31_RS24355 at 639.182 kb on - strand, within EX31_RS24355 at 639.184 kb on - strand, within EX31_RS24355 at 639.184 kb on - strand, within EX31_RS24355 at 639.264 kb on + strand, within EX31_RS24355 at 639.298 kb on + strand, within EX31_RS24355 at 639.354 kb on + strand, within EX31_RS24355 at 639.355 kb on - strand, within EX31_RS24355 at 639.355 kb on - strand, within EX31_RS24355 at 639.358 kb on + strand, within EX31_RS24355 at 639.358 kb on + strand, within EX31_RS24355 at 639.358 kb on + strand, within EX31_RS24355 at 639.358 kb on + strand, within EX31_RS24355 at 639.358 kb on + strand, within EX31_RS24355 at 639.359 kb on - strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.503 kb on + strand, within EX31_RS24355 at 639.504 kb on - strand, within EX31_RS24355 at 639.504 kb on - strand, within EX31_RS24355 at 639.504 kb on - strand, within EX31_RS24355 at 639.504 kb on - strand, within EX31_RS24355 at 639.504 kb on - strand, within EX31_RS24355 at 639.504 kb on - strand, within EX31_RS24355 at 639.504 kb on - strand, within EX31_RS24355 at 639.504 kb on - strand, within EX31_RS24355 at 639.505 kb on + strand, within EX31_RS24355 at 639.505 kb on + strand, within EX31_RS24355 at 639.505 kb on + strand, within EX31_RS24355 at 639.505 kb on + strand, within EX31_RS24355 at 639.506 kb on - strand, within EX31_RS24355 at 639.527 kb on + strand, within EX31_RS24355 at 639.729 kb on + strand at 639.756 kb on + strand at 639.756 kb on + strand at 639.756 kb on + strand at 639.756 kb on + strand at 639.802 kb on + strand at 639.802 kb on + strand at 639.803 kb on - strand at 639.919 kb on + strand at 639.919 kb on + strand at 639.919 kb on + strand at 639.919 kb on + strand at 639.919 kb on + strand at 639.919 kb on + strand at 639.956 kb on + strand at 639.971 kb on + strand at 640.175 kb on + strand, within EX31_RS24360 at 640.175 kb on + strand, within EX31_RS24360 at 640.176 kb on - strand, within EX31_RS24360 at 640.254 kb on + strand, within EX31_RS24360 at 640.254 kb on + strand, within EX31_RS24360 at 640.255 kb on - strand, within EX31_RS24360 at 640.255 kb on - strand, within EX31_RS24360 at 640.280 kb on + strand, within EX31_RS24360 at 640.294 kb on + strand, within EX31_RS24360 at 640.302 kb on + strand, within EX31_RS24360 at 640.302 kb on + strand, within EX31_RS24360 at 640.303 kb on - strand, within EX31_RS24360 at 640.303 kb on - strand, within EX31_RS24360 at 640.428 kb on - strand, within EX31_RS24360 at 640.462 kb on - strand, within EX31_RS24360 at 640.578 kb on + strand, within EX31_RS24360 at 640.677 kb on + strand, within EX31_RS24360 at 640.677 kb on + strand, within EX31_RS24360 at 640.677 kb on + strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.679 kb on + strand, within EX31_RS24360 at 640.680 kb on - strand, within EX31_RS24360 at 640.763 kb on + strand, within EX31_RS24360 at 640.763 kb on + strand, within EX31_RS24360 at 640.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 635,857 + EX31_RS24350 0.23 +1.0 635,928 + EX31_RS24350 0.29 -0.8 635,964 - EX31_RS24350 0.32 -2.0 636,089 + EX31_RS24350 0.43 -2.7 636,089 + EX31_RS24350 0.43 -1.0 636,089 + EX31_RS24350 0.43 +2.8 636,089 + EX31_RS24350 0.43 -0.6 636,090 - EX31_RS24350 0.43 +0.4 636,090 - EX31_RS24350 0.43 +0.3 636,094 + EX31_RS24350 0.43 +1.1 636,094 + EX31_RS24350 0.43 +0.8 636,094 + EX31_RS24350 0.43 +1.4 636,094 + EX31_RS24350 0.43 +0.0 636,095 - EX31_RS24350 0.43 +0.8 636,095 - EX31_RS24350 0.43 +0.4 636,095 - EX31_RS24350 0.43 +1.4 636,096 + EX31_RS24350 0.43 -0.8 636,334 + EX31_RS24350 0.64 -0.5 636,334 + EX31_RS24350 0.64 +0.5 636,334 + EX31_RS24350 0.64 +0.2 636,334 + EX31_RS24350 0.64 +2.8 636,334 + EX31_RS24350 0.64 -0.2 636,334 + EX31_RS24350 0.64 +0.2 636,335 - EX31_RS24350 0.64 +0.8 636,335 - EX31_RS24350 0.64 +0.6 636,336 + EX31_RS24350 0.64 +3.6 636,336 + EX31_RS24350 0.64 -0.4 636,336 + EX31_RS24350 0.64 -1.8 636,336 + EX31_RS24350 0.64 +0.2 636,336 + EX31_RS24350 0.64 -0.2 636,336 + EX31_RS24350 0.64 +0.4 636,337 - EX31_RS24350 0.65 +0.8 636,337 - EX31_RS24350 0.65 +1.4 636,372 + EX31_RS24350 0.68 -2.4 636,372 + EX31_RS24350 0.68 +0.1 636,373 - EX31_RS24350 0.68 +1.5 636,610 + EX31_RS24350 0.88 +1.8 636,746 + -0.5 636,765 + -0.2 636,769 - +0.2 636,892 - -0.6 636,920 + -0.1 636,969 + +0.0 636,979 + +0.6 636,979 + +0.0 636,979 + +0.8 636,979 + -0.7 636,979 + +2.4 636,979 + +0.2 636,979 + -0.6 636,980 - +0.5 636,980 - +1.8 636,980 - +1.4 636,980 - +1.8 636,980 - +0.8 636,980 - +0.4 636,980 - -0.4 636,980 - +0.8 636,981 + -1.4 636,981 + +0.1 636,981 + +1.8 636,981 + -2.8 636,982 - -0.7 636,982 - +1.0 636,982 - -1.2 637,012 + -1.2 637,013 - +0.9 637,013 - -0.2 637,013 - -0.2 637,024 - +0.2 637,024 - +0.6 637,024 - -0.6 637,026 + -0.2 637,070 + EX31_RS24355 0.10 +0.4 637,152 + EX31_RS24355 0.13 -1.6 637,152 + EX31_RS24355 0.13 -0.8 637,152 + EX31_RS24355 0.13 +0.6 637,152 + EX31_RS24355 0.13 +0.7 637,155 + EX31_RS24355 0.13 +1.1 637,209 + EX31_RS24355 0.15 -0.8 637,297 + EX31_RS24355 0.18 -0.6 637,309 - EX31_RS24355 0.18 -1.2 637,309 - EX31_RS24355 0.18 +1.6 637,309 - EX31_RS24355 0.18 +0.0 637,501 - EX31_RS24355 0.24 +0.4 637,501 - EX31_RS24355 0.24 -0.5 637,510 - EX31_RS24355 0.25 +1.8 637,716 + EX31_RS24355 0.31 +0.3 637,717 - EX31_RS24355 0.31 +0.8 637,720 + EX31_RS24355 0.31 -0.6 637,720 + EX31_RS24355 0.31 +0.8 637,819 + EX31_RS24355 0.34 -1.2 637,881 - EX31_RS24355 0.36 +1.4 637,903 + EX31_RS24355 0.37 +0.8 637,903 + EX31_RS24355 0.37 +0.3 637,904 - EX31_RS24355 0.37 +0.8 637,915 + EX31_RS24355 0.38 +0.5 637,947 + EX31_RS24355 0.39 +1.0 638,091 + EX31_RS24355 0.43 -0.8 638,139 + EX31_RS24355 0.45 +0.2 638,143 - EX31_RS24355 0.45 -1.8 638,202 + EX31_RS24355 0.47 +0.8 638,289 + EX31_RS24355 0.50 -0.2 638,290 - EX31_RS24355 0.50 +0.8 638,320 + EX31_RS24355 0.51 +0.8 638,320 + EX31_RS24355 0.51 +1.8 638,320 + EX31_RS24355 0.51 -0.6 638,321 - EX31_RS24355 0.51 +1.0 638,321 - EX31_RS24355 0.51 +1.4 638,346 + EX31_RS24355 0.52 -2.4 638,346 + EX31_RS24355 0.52 +1.1 638,346 + EX31_RS24355 0.52 +0.2 638,370 - EX31_RS24355 0.52 -0.2 638,399 + EX31_RS24355 0.53 -1.6 638,474 + EX31_RS24355 0.56 -0.2 638,474 + EX31_RS24355 0.56 +0.2 638,492 + EX31_RS24355 0.56 -1.6 638,493 - EX31_RS24355 0.56 -0.6 638,493 - EX31_RS24355 0.56 -0.8 638,532 + EX31_RS24355 0.58 +2.0 638,726 + EX31_RS24355 0.64 -0.2 638,750 + EX31_RS24355 0.65 -0.6 638,774 + EX31_RS24355 0.65 +0.2 638,774 + EX31_RS24355 0.65 +0.0 638,942 + EX31_RS24355 0.71 -0.7 638,943 - EX31_RS24355 0.71 -0.8 638,943 - EX31_RS24355 0.71 -2.0 639,181 + EX31_RS24355 0.78 +1.3 639,182 - EX31_RS24355 0.79 -0.4 639,182 - EX31_RS24355 0.79 +1.8 639,184 - EX31_RS24355 0.79 -0.8 639,184 - EX31_RS24355 0.79 +0.0 639,264 + EX31_RS24355 0.81 -1.9 639,298 + EX31_RS24355 0.82 +1.3 639,354 + EX31_RS24355 0.84 +1.0 639,355 - EX31_RS24355 0.84 -0.8 639,355 - EX31_RS24355 0.84 +1.2 639,358 + EX31_RS24355 0.84 +1.4 639,358 + EX31_RS24355 0.84 +0.5 639,358 + EX31_RS24355 0.84 +1.5 639,358 + EX31_RS24355 0.84 -1.2 639,358 + EX31_RS24355 0.84 +0.8 639,359 - EX31_RS24355 0.84 +1.3 639,503 + EX31_RS24355 0.89 +0.3 639,503 + EX31_RS24355 0.89 +1.2 639,503 + EX31_RS24355 0.89 +0.4 639,503 + EX31_RS24355 0.89 +0.4 639,503 + EX31_RS24355 0.89 -0.0 639,503 + EX31_RS24355 0.89 -0.2 639,503 + EX31_RS24355 0.89 -0.8 639,503 + EX31_RS24355 0.89 +1.8 639,503 + EX31_RS24355 0.89 -1.2 639,503 + EX31_RS24355 0.89 +1.2 639,503 + EX31_RS24355 0.89 +0.4 639,503 + EX31_RS24355 0.89 -1.1 639,503 + EX31_RS24355 0.89 -0.2 639,503 + EX31_RS24355 0.89 +1.5 639,503 + EX31_RS24355 0.89 +1.2 639,504 - EX31_RS24355 0.89 +1.4 639,504 - EX31_RS24355 0.89 +1.0 639,504 - EX31_RS24355 0.89 -0.2 639,504 - EX31_RS24355 0.89 +1.4 639,504 - EX31_RS24355 0.89 +1.2 639,504 - EX31_RS24355 0.89 +0.5 639,504 - EX31_RS24355 0.89 +1.8 639,504 - EX31_RS24355 0.89 -0.2 639,505 + EX31_RS24355 0.89 +0.2 639,505 + EX31_RS24355 0.89 -1.4 639,505 + EX31_RS24355 0.89 -0.2 639,505 + EX31_RS24355 0.89 +1.4 639,506 - EX31_RS24355 0.89 +0.2 639,527 + EX31_RS24355 0.90 +0.8 639,729 + -1.0 639,756 + -0.4 639,756 + +1.5 639,756 + +0.0 639,756 + -1.2 639,802 + -0.2 639,802 + +0.6 639,803 - +0.8 639,919 + +0.4 639,919 + -1.9 639,919 + +1.0 639,919 + +0.8 639,919 + +1.8 639,919 + -0.8 639,956 + +0.3 639,971 + +0.8 640,175 + EX31_RS24360 0.29 -0.2 640,175 + EX31_RS24360 0.29 -1.6 640,176 - EX31_RS24360 0.29 +1.3 640,254 + EX31_RS24360 0.36 +0.2 640,254 + EX31_RS24360 0.36 +1.4 640,255 - EX31_RS24360 0.36 +0.8 640,255 - EX31_RS24360 0.36 +0.8 640,280 + EX31_RS24360 0.39 -0.9 640,294 + EX31_RS24360 0.40 +1.6 640,302 + EX31_RS24360 0.41 +1.2 640,302 + EX31_RS24360 0.41 +0.0 640,303 - EX31_RS24360 0.41 -1.8 640,303 - EX31_RS24360 0.41 +0.8 640,428 - EX31_RS24360 0.53 -0.6 640,462 - EX31_RS24360 0.56 +1.2 640,578 + EX31_RS24360 0.67 +0.1 640,677 + EX31_RS24360 0.77 -0.8 640,677 + EX31_RS24360 0.77 +1.8 640,677 + EX31_RS24360 0.77 +0.8 640,678 - EX31_RS24360 0.77 -0.5 640,678 - EX31_RS24360 0.77 -0.4 640,678 - EX31_RS24360 0.77 +2.1 640,678 - EX31_RS24360 0.77 +0.8 640,678 - EX31_RS24360 0.77 -0.8 640,678 - EX31_RS24360 0.77 +0.8 640,678 - EX31_RS24360 0.77 +0.9 640,679 + EX31_RS24360 0.77 -1.6 640,680 - EX31_RS24360 0.77 -0.6 640,763 + EX31_RS24360 0.85 -0.2 640,763 + EX31_RS24360 0.85 +1.2 640,843 + +2.1
Or see this region's nucleotide sequence