Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23990 and EX31_RS23995 overlap by 1 nucleotides EX31_RS23995 and EX31_RS24000 overlap by 8 nucleotides EX31_RS24000 and EX31_RS24005 are separated by 179 nucleotides EX31_RS24005 and EX31_RS24010 are separated by 27 nucleotides
EX31_RS23990: EX31_RS23990 - SDR family NAD(P)-dependent oxidoreductase, at 566,353 to 567,069
_RS23990
EX31_RS23995: EX31_RS23995 - nuclear transport factor 2 family protein, at 567,069 to 567,521
_RS23995
EX31_RS24000: EX31_RS24000 - MerR family transcriptional regulator, at 567,514 to 568,374
_RS24000
EX31_RS24005: EX31_RS24005 - helix-turn-helix transcriptional regulator, at 568,554 to 569,123
_RS24005
EX31_RS24010: EX31_RS24010 - GNAT family N-acetyltransferase, at 569,151 to 569,687
_RS24010
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2 at 566.725 kb on + strand, within EX31_RS23990 at 566.896 kb on + strand, within EX31_RS23990 at 567.128 kb on - strand, within EX31_RS23995 at 567.128 kb on - strand, within EX31_RS23995 at 567.128 kb on - strand, within EX31_RS23995 at 567.149 kb on - strand, within EX31_RS23995 at 567.163 kb on + strand, within EX31_RS23995 at 567.163 kb on + strand, within EX31_RS23995 at 567.163 kb on + strand, within EX31_RS23995 at 567.164 kb on - strand, within EX31_RS23995 at 567.164 kb on - strand, within EX31_RS23995 at 567.164 kb on - strand, within EX31_RS23995 at 567.167 kb on + strand, within EX31_RS23995 at 567.167 kb on + strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.170 kb on + strand, within EX31_RS23995 at 567.170 kb on + strand, within EX31_RS23995 at 567.288 kb on - strand, within EX31_RS23995 at 567.288 kb on - strand, within EX31_RS23995 at 567.317 kb on - strand, within EX31_RS23995 at 567.347 kb on - strand, within EX31_RS23995 at 567.374 kb on - strand, within EX31_RS23995 at 567.374 kb on - strand, within EX31_RS23995 at 567.412 kb on + strand, within EX31_RS23995 at 567.417 kb on - strand, within EX31_RS23995 at 567.516 kb on - strand at 567.639 kb on + strand, within EX31_RS24000 at 567.640 kb on - strand, within EX31_RS24000 at 567.640 kb on - strand, within EX31_RS24000 at 567.767 kb on + strand, within EX31_RS24000 at 567.793 kb on + strand, within EX31_RS24000 at 567.794 kb on - strand, within EX31_RS24000 at 567.858 kb on + strand, within EX31_RS24000 at 567.859 kb on - strand, within EX31_RS24000 at 567.859 kb on - strand, within EX31_RS24000 at 568.020 kb on + strand, within EX31_RS24000 at 568.100 kb on - strand, within EX31_RS24000 at 568.158 kb on + strand, within EX31_RS24000 at 568.159 kb on - strand, within EX31_RS24000 at 568.159 kb on - strand, within EX31_RS24000 at 568.374 kb on + strand at 568.374 kb on + strand at 568.374 kb on + strand at 568.374 kb on + strand at 568.374 kb on + strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.395 kb on - strand at 568.395 kb on - strand at 568.395 kb on - strand at 568.395 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.404 kb on - strand at 568.404 kb on - strand at 568.404 kb on - strand at 568.408 kb on + strand at 568.408 kb on + strand at 568.408 kb on + strand at 568.408 kb on + strand at 568.408 kb on + strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.428 kb on - strand at 568.609 kb on + strand at 568.609 kb on + strand at 568.609 kb on + strand at 568.781 kb on + strand, within EX31_RS24005 at 568.782 kb on - strand, within EX31_RS24005 at 568.782 kb on - strand, within EX31_RS24005 at 568.925 kb on + strand, within EX31_RS24005 at 568.925 kb on + strand, within EX31_RS24005 at 568.926 kb on - strand, within EX31_RS24005 at 568.929 kb on + strand, within EX31_RS24005 at 568.929 kb on + strand, within EX31_RS24005 at 568.929 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 569.070 kb on + strand at 569.070 kb on + strand at 569.070 kb on + strand at 569.071 kb on - strand at 569.121 kb on + strand at 569.121 kb on + strand at 569.121 kb on + strand at 569.121 kb on + strand at 569.122 kb on - strand at 569.122 kb on - strand at 569.122 kb on - strand at 569.137 kb on + strand at 569.144 kb on + strand at 569.145 kb on - strand at 569.145 kb on - strand at 569.320 kb on + strand, within EX31_RS24010 at 569.320 kb on + strand, within EX31_RS24010 at 569.320 kb on + strand, within EX31_RS24010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 566,725 + EX31_RS23990 0.52 +1.8 566,896 + EX31_RS23990 0.76 -0.5 567,128 - EX31_RS23995 0.13 -0.8 567,128 - EX31_RS23995 0.13 +0.5 567,128 - EX31_RS23995 0.13 -1.2 567,149 - EX31_RS23995 0.18 +1.4 567,163 + EX31_RS23995 0.21 +0.9 567,163 + EX31_RS23995 0.21 -1.1 567,163 + EX31_RS23995 0.21 +0.8 567,164 - EX31_RS23995 0.21 +0.5 567,164 - EX31_RS23995 0.21 +0.0 567,164 - EX31_RS23995 0.21 -0.8 567,167 + EX31_RS23995 0.22 +1.0 567,167 + EX31_RS23995 0.22 +2.1 567,168 - EX31_RS23995 0.22 +1.3 567,168 - EX31_RS23995 0.22 +0.2 567,168 - EX31_RS23995 0.22 +0.8 567,168 - EX31_RS23995 0.22 +0.8 567,168 - EX31_RS23995 0.22 -0.4 567,168 - EX31_RS23995 0.22 +1.4 567,170 + EX31_RS23995 0.22 -0.1 567,170 + EX31_RS23995 0.22 +1.2 567,288 - EX31_RS23995 0.48 +0.6 567,288 - EX31_RS23995 0.48 +0.0 567,317 - EX31_RS23995 0.55 +1.0 567,347 - EX31_RS23995 0.61 +1.3 567,374 - EX31_RS23995 0.67 +1.4 567,374 - EX31_RS23995 0.67 -0.5 567,412 + EX31_RS23995 0.76 +0.4 567,417 - EX31_RS23995 0.77 -0.6 567,516 - +1.6 567,639 + EX31_RS24000 0.15 +0.2 567,640 - EX31_RS24000 0.15 -1.3 567,640 - EX31_RS24000 0.15 -0.2 567,767 + EX31_RS24000 0.29 +0.4 567,793 + EX31_RS24000 0.32 -1.1 567,794 - EX31_RS24000 0.33 -1.2 567,858 + EX31_RS24000 0.40 +0.1 567,859 - EX31_RS24000 0.40 +0.8 567,859 - EX31_RS24000 0.40 -0.7 568,020 + EX31_RS24000 0.59 -0.2 568,100 - EX31_RS24000 0.68 +0.8 568,158 + EX31_RS24000 0.75 -1.2 568,159 - EX31_RS24000 0.75 +0.2 568,159 - EX31_RS24000 0.75 -0.2 568,374 + +0.8 568,374 + +0.8 568,374 + -0.2 568,374 + -1.5 568,374 + -0.8 568,375 - +0.3 568,375 - +0.8 568,375 - -0.5 568,375 - -0.1 568,375 - +0.8 568,375 - +0.1 568,375 - +0.0 568,375 - -2.0 568,375 - +0.3 568,395 - +0.3 568,395 - +0.8 568,395 - -0.6 568,395 - -1.3 568,402 - -1.1 568,402 - +0.4 568,402 - +0.9 568,402 - -0.1 568,402 - +0.5 568,402 - +1.1 568,402 - -1.1 568,404 - +0.4 568,404 - -1.1 568,404 - +2.0 568,408 + +1.4 568,408 + -0.8 568,408 + +0.8 568,408 + +1.8 568,408 + +1.2 568,409 - -0.1 568,409 - +0.3 568,409 - +1.4 568,409 - +1.4 568,409 - +2.4 568,409 - +1.5 568,409 - -0.2 568,409 - +0.2 568,409 - -0.2 568,409 - +0.8 568,428 - +1.2 568,609 + +1.6 568,609 + +0.9 568,609 + +1.6 568,781 + EX31_RS24005 0.40 +0.9 568,782 - EX31_RS24005 0.40 +1.5 568,782 - EX31_RS24005 0.40 +0.8 568,925 + EX31_RS24005 0.65 -0.6 568,925 + EX31_RS24005 0.65 +0.4 568,926 - EX31_RS24005 0.65 -0.2 568,929 + EX31_RS24005 0.66 +0.8 568,929 + EX31_RS24005 0.66 +0.8 568,929 + EX31_RS24005 0.66 -0.4 568,964 + EX31_RS24005 0.72 +0.5 568,964 + EX31_RS24005 0.72 -0.5 568,964 + EX31_RS24005 0.72 +1.8 568,964 + EX31_RS24005 0.72 -0.0 568,964 + EX31_RS24005 0.72 +0.4 568,964 + EX31_RS24005 0.72 -0.2 568,964 + EX31_RS24005 0.72 +1.6 568,964 + EX31_RS24005 0.72 -0.3 569,070 + +0.2 569,070 + -0.0 569,070 + -0.2 569,071 - -0.2 569,121 + +1.7 569,121 + +2.4 569,121 + +0.2 569,121 + +0.8 569,122 - +0.7 569,122 - -0.3 569,122 - -0.2 569,137 + +0.6 569,144 + +0.7 569,145 - +0.3 569,145 - -0.1 569,320 + EX31_RS24010 0.31 -0.3 569,320 + EX31_RS24010 0.31 +0.9 569,320 + EX31_RS24010 0.31 -0.8
Or see this region's nucleotide sequence