Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19810 and EX31_RS19815 are separated by 13 nucleotides EX31_RS19815 and EX31_RS19820 are separated by 2 nucleotides
EX31_RS19810: EX31_RS19810 - Gfo/Idh/MocA family oxidoreductase, at 593,137 to 594,159
_RS19810
EX31_RS19815: EX31_RS19815 - Gfo/Idh/MocA family oxidoreductase, at 594,173 to 595,240
_RS19815
EX31_RS19820: EX31_RS19820 - Gfo/Idh/MocA family oxidoreductase, at 595,243 to 596,418
_RS19820
Position (kb) 594
595
596 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 593.231 kb on + strand at 593.255 kb on - strand, within EX31_RS19810 at 593.338 kb on + strand, within EX31_RS19810 at 593.338 kb on + strand, within EX31_RS19810 at 593.339 kb on - strand, within EX31_RS19810 at 593.339 kb on - strand, within EX31_RS19810 at 593.339 kb on - strand, within EX31_RS19810 at 593.352 kb on + strand, within EX31_RS19810 at 593.388 kb on - strand, within EX31_RS19810 at 593.597 kb on - strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.607 kb on + strand, within EX31_RS19810 at 593.608 kb on - strand, within EX31_RS19810 at 593.608 kb on - strand, within EX31_RS19810 at 593.611 kb on + strand, within EX31_RS19810 at 593.611 kb on + strand, within EX31_RS19810 at 593.611 kb on + strand, within EX31_RS19810 at 593.611 kb on + strand, within EX31_RS19810 at 593.679 kb on - strand, within EX31_RS19810 at 593.681 kb on + strand, within EX31_RS19810 at 593.682 kb on - strand, within EX31_RS19810 at 593.682 kb on - strand, within EX31_RS19810 at 593.710 kb on - strand, within EX31_RS19810 at 593.710 kb on - strand, within EX31_RS19810 at 593.710 kb on - strand, within EX31_RS19810 at 593.710 kb on - strand, within EX31_RS19810 at 593.760 kb on + strand, within EX31_RS19810 at 593.952 kb on + strand, within EX31_RS19810 at 593.952 kb on + strand, within EX31_RS19810 at 593.952 kb on + strand, within EX31_RS19810 at 593.952 kb on + strand, within EX31_RS19810 at 593.953 kb on - strand, within EX31_RS19810 at 593.953 kb on - strand, within EX31_RS19810 at 593.953 kb on - strand, within EX31_RS19810 at 593.953 kb on - strand, within EX31_RS19810 at 593.953 kb on - strand, within EX31_RS19810 at 593.953 kb on - strand, within EX31_RS19810 at 593.953 kb on - strand, within EX31_RS19810 at 594.017 kb on + strand, within EX31_RS19810 at 594.017 kb on + strand, within EX31_RS19810 at 594.018 kb on - strand, within EX31_RS19810 at 594.018 kb on - strand, within EX31_RS19810 at 594.071 kb on - strand at 594.114 kb on + strand at 594.114 kb on + strand at 594.114 kb on + strand at 594.115 kb on - strand at 594.115 kb on - strand at 594.120 kb on + strand at 594.121 kb on - strand at 594.121 kb on - strand at 594.227 kb on - strand at 594.253 kb on - strand at 594.354 kb on + strand, within EX31_RS19815 at 594.355 kb on - strand, within EX31_RS19815 at 594.355 kb on - strand, within EX31_RS19815 at 594.355 kb on - strand, within EX31_RS19815 at 594.355 kb on - strand, within EX31_RS19815 at 594.355 kb on - strand, within EX31_RS19815 at 594.390 kb on + strand, within EX31_RS19815 at 594.390 kb on + strand, within EX31_RS19815 at 594.390 kb on + strand, within EX31_RS19815 at 594.390 kb on + strand, within EX31_RS19815 at 594.390 kb on + strand, within EX31_RS19815 at 594.390 kb on + strand, within EX31_RS19815 at 594.391 kb on - strand, within EX31_RS19815 at 594.391 kb on - strand, within EX31_RS19815 at 594.391 kb on - strand, within EX31_RS19815 at 594.391 kb on - strand, within EX31_RS19815 at 594.391 kb on - strand, within EX31_RS19815 at 594.391 kb on - strand, within EX31_RS19815 at 594.407 kb on - strand, within EX31_RS19815 at 594.408 kb on + strand, within EX31_RS19815 at 594.408 kb on + strand, within EX31_RS19815 at 594.408 kb on + strand, within EX31_RS19815 at 594.408 kb on + strand, within EX31_RS19815 at 594.409 kb on - strand, within EX31_RS19815 at 594.409 kb on - strand, within EX31_RS19815 at 594.490 kb on - strand, within EX31_RS19815 at 594.490 kb on - strand, within EX31_RS19815 at 594.568 kb on + strand, within EX31_RS19815 at 594.568 kb on + strand, within EX31_RS19815 at 594.569 kb on - strand, within EX31_RS19815 at 594.612 kb on + strand, within EX31_RS19815 at 594.612 kb on + strand, within EX31_RS19815 at 594.612 kb on + strand, within EX31_RS19815 at 594.613 kb on - strand, within EX31_RS19815 at 594.613 kb on - strand, within EX31_RS19815 at 594.613 kb on - strand, within EX31_RS19815 at 594.646 kb on + strand, within EX31_RS19815 at 594.681 kb on + strand, within EX31_RS19815 at 594.682 kb on - strand, within EX31_RS19815 at 594.813 kb on + strand, within EX31_RS19815 at 594.814 kb on - strand, within EX31_RS19815 at 594.816 kb on + strand, within EX31_RS19815 at 594.816 kb on + strand, within EX31_RS19815 at 594.817 kb on - strand, within EX31_RS19815 at 594.817 kb on - strand, within EX31_RS19815 at 594.817 kb on - strand, within EX31_RS19815 at 594.817 kb on - strand, within EX31_RS19815 at 594.817 kb on - strand, within EX31_RS19815 at 594.825 kb on + strand, within EX31_RS19815 at 594.826 kb on - strand, within EX31_RS19815 at 594.826 kb on - strand, within EX31_RS19815 at 594.826 kb on - strand, within EX31_RS19815 at 595.004 kb on + strand, within EX31_RS19815 at 595.005 kb on - strand, within EX31_RS19815 at 595.005 kb on - strand, within EX31_RS19815 at 595.005 kb on - strand, within EX31_RS19815 at 595.081 kb on - strand, within EX31_RS19815 at 595.081 kb on - strand, within EX31_RS19815 at 595.121 kb on - strand, within EX31_RS19815 at 595.126 kb on + strand, within EX31_RS19815 at 595.126 kb on + strand, within EX31_RS19815 at 595.127 kb on - strand, within EX31_RS19815 at 595.127 kb on - strand, within EX31_RS19815 at 595.127 kb on - strand, within EX31_RS19815 at 595.127 kb on - strand, within EX31_RS19815 at 595.131 kb on + strand, within EX31_RS19815 at 595.131 kb on + strand, within EX31_RS19815 at 595.131 kb on + strand, within EX31_RS19815 at 595.131 kb on + strand, within EX31_RS19815 at 595.131 kb on + strand, within EX31_RS19815 at 595.131 kb on + strand, within EX31_RS19815 at 595.131 kb on + strand, within EX31_RS19815 at 595.131 kb on + strand, within EX31_RS19815 at 595.131 kb on + strand, within EX31_RS19815 at 595.132 kb on - strand, within EX31_RS19815 at 595.132 kb on - strand, within EX31_RS19815 at 595.132 kb on - strand, within EX31_RS19815 at 595.132 kb on - strand, within EX31_RS19815 at 595.132 kb on - strand, within EX31_RS19815 at 595.132 kb on - strand, within EX31_RS19815 at 595.135 kb on + strand at 595.136 kb on - strand at 595.136 kb on - strand at 595.215 kb on + strand at 595.215 kb on + strand at 595.216 kb on - strand at 595.216 kb on - strand at 595.255 kb on - strand at 595.422 kb on - strand, within EX31_RS19820 at 595.534 kb on - strand, within EX31_RS19820 at 595.534 kb on - strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.535 kb on + strand, within EX31_RS19820 at 595.536 kb on - strand, within EX31_RS19820 at 595.536 kb on - strand, within EX31_RS19820 at 595.536 kb on - strand, within EX31_RS19820 at 595.536 kb on - strand, within EX31_RS19820 at 595.536 kb on - strand, within EX31_RS19820 at 595.559 kb on + strand, within EX31_RS19820 at 595.559 kb on + strand, within EX31_RS19820 at 595.560 kb on - strand, within EX31_RS19820 at 595.560 kb on - strand, within EX31_RS19820 at 595.637 kb on + strand, within EX31_RS19820 at 595.637 kb on + strand, within EX31_RS19820 at 595.637 kb on + strand, within EX31_RS19820 at 595.637 kb on + strand, within EX31_RS19820 at 595.637 kb on + strand, within EX31_RS19820 at 595.637 kb on + strand, within EX31_RS19820 at 595.637 kb on + strand, within EX31_RS19820 at 595.638 kb on - strand, within EX31_RS19820 at 595.638 kb on - strand, within EX31_RS19820 at 595.638 kb on - strand, within EX31_RS19820 at 595.748 kb on + strand, within EX31_RS19820 at 595.749 kb on - strand, within EX31_RS19820 at 595.806 kb on + strand, within EX31_RS19820 at 595.931 kb on + strand, within EX31_RS19820 at 595.932 kb on - strand, within EX31_RS19820 at 595.934 kb on + strand, within EX31_RS19820 at 595.935 kb on - strand, within EX31_RS19820 at 596.035 kb on - strand, within EX31_RS19820 at 596.110 kb on + strand, within EX31_RS19820 at 596.110 kb on + strand, within EX31_RS19820 at 596.111 kb on - strand, within EX31_RS19820 at 596.189 kb on + strand, within EX31_RS19820 at 596.189 kb on + strand, within EX31_RS19820 at 596.189 kb on + strand, within EX31_RS19820 at 596.190 kb on - strand, within EX31_RS19820
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 593,231 + +2.0 593,255 - EX31_RS19810 0.12 +0.7 593,338 + EX31_RS19810 0.20 +0.2 593,338 + EX31_RS19810 0.20 -0.0 593,339 - EX31_RS19810 0.20 +0.4 593,339 - EX31_RS19810 0.20 +1.7 593,339 - EX31_RS19810 0.20 +1.0 593,352 + EX31_RS19810 0.21 +1.2 593,388 - EX31_RS19810 0.25 +0.7 593,597 - EX31_RS19810 0.45 +0.1 593,607 + EX31_RS19810 0.46 +0.8 593,607 + EX31_RS19810 0.46 +3.6 593,607 + EX31_RS19810 0.46 -0.1 593,607 + EX31_RS19810 0.46 -1.3 593,607 + EX31_RS19810 0.46 +0.3 593,607 + EX31_RS19810 0.46 -1.0 593,607 + EX31_RS19810 0.46 -1.4 593,607 + EX31_RS19810 0.46 +0.2 593,607 + EX31_RS19810 0.46 +0.3 593,607 + EX31_RS19810 0.46 -0.0 593,607 + EX31_RS19810 0.46 +1.6 593,607 + EX31_RS19810 0.46 +0.4 593,607 + EX31_RS19810 0.46 -1.5 593,607 + EX31_RS19810 0.46 -1.4 593,608 - EX31_RS19810 0.46 -0.2 593,608 - EX31_RS19810 0.46 -1.2 593,611 + EX31_RS19810 0.46 +3.1 593,611 + EX31_RS19810 0.46 +0.6 593,611 + EX31_RS19810 0.46 -0.4 593,611 + EX31_RS19810 0.46 -1.3 593,679 - EX31_RS19810 0.53 -0.5 593,681 + EX31_RS19810 0.53 +1.8 593,682 - EX31_RS19810 0.53 +0.3 593,682 - EX31_RS19810 0.53 +0.7 593,710 - EX31_RS19810 0.56 -0.9 593,710 - EX31_RS19810 0.56 +1.0 593,710 - EX31_RS19810 0.56 +0.6 593,710 - EX31_RS19810 0.56 -1.8 593,760 + EX31_RS19810 0.61 -0.3 593,952 + EX31_RS19810 0.80 +0.4 593,952 + EX31_RS19810 0.80 -0.8 593,952 + EX31_RS19810 0.80 +0.5 593,952 + EX31_RS19810 0.80 -0.0 593,953 - EX31_RS19810 0.80 -0.7 593,953 - EX31_RS19810 0.80 -0.1 593,953 - EX31_RS19810 0.80 -0.4 593,953 - EX31_RS19810 0.80 +0.1 593,953 - EX31_RS19810 0.80 +1.2 593,953 - EX31_RS19810 0.80 +1.3 593,953 - EX31_RS19810 0.80 +1.2 594,017 + EX31_RS19810 0.86 +1.0 594,017 + EX31_RS19810 0.86 +2.6 594,018 - EX31_RS19810 0.86 -0.3 594,018 - EX31_RS19810 0.86 +0.8 594,071 - +1.1 594,114 + +0.6 594,114 + -0.8 594,114 + -0.0 594,115 - -0.2 594,115 - +0.4 594,120 + +0.2 594,121 - -1.3 594,121 - -0.7 594,227 - +1.0 594,253 - -0.0 594,354 + EX31_RS19815 0.17 +1.3 594,355 - EX31_RS19815 0.17 -0.6 594,355 - EX31_RS19815 0.17 +0.8 594,355 - EX31_RS19815 0.17 -0.3 594,355 - EX31_RS19815 0.17 +0.4 594,355 - EX31_RS19815 0.17 -0.3 594,390 + EX31_RS19815 0.20 +0.4 594,390 + EX31_RS19815 0.20 -1.2 594,390 + EX31_RS19815 0.20 +0.2 594,390 + EX31_RS19815 0.20 +2.0 594,390 + EX31_RS19815 0.20 +1.8 594,390 + EX31_RS19815 0.20 -1.8 594,391 - EX31_RS19815 0.20 -1.4 594,391 - EX31_RS19815 0.20 +1.7 594,391 - EX31_RS19815 0.20 +1.0 594,391 - EX31_RS19815 0.20 +1.0 594,391 - EX31_RS19815 0.20 +0.3 594,391 - EX31_RS19815 0.20 -0.0 594,407 - EX31_RS19815 0.22 -0.6 594,408 + EX31_RS19815 0.22 +0.2 594,408 + EX31_RS19815 0.22 -0.2 594,408 + EX31_RS19815 0.22 -0.2 594,408 + EX31_RS19815 0.22 -1.0 594,409 - EX31_RS19815 0.22 -0.7 594,409 - EX31_RS19815 0.22 +0.7 594,490 - EX31_RS19815 0.30 +0.7 594,490 - EX31_RS19815 0.30 +0.2 594,568 + EX31_RS19815 0.37 +0.8 594,568 + EX31_RS19815 0.37 -0.6 594,569 - EX31_RS19815 0.37 +0.6 594,612 + EX31_RS19815 0.41 -0.0 594,612 + EX31_RS19815 0.41 -1.6 594,612 + EX31_RS19815 0.41 -0.9 594,613 - EX31_RS19815 0.41 +0.5 594,613 - EX31_RS19815 0.41 -0.4 594,613 - EX31_RS19815 0.41 -0.7 594,646 + EX31_RS19815 0.44 +2.0 594,681 + EX31_RS19815 0.48 -0.0 594,682 - EX31_RS19815 0.48 -0.5 594,813 + EX31_RS19815 0.60 +1.7 594,814 - EX31_RS19815 0.60 -1.4 594,816 + EX31_RS19815 0.60 +0.6 594,816 + EX31_RS19815 0.60 -0.6 594,817 - EX31_RS19815 0.60 -0.8 594,817 - EX31_RS19815 0.60 +0.5 594,817 - EX31_RS19815 0.60 +0.4 594,817 - EX31_RS19815 0.60 -1.6 594,817 - EX31_RS19815 0.60 -0.6 594,825 + EX31_RS19815 0.61 -0.8 594,826 - EX31_RS19815 0.61 +1.6 594,826 - EX31_RS19815 0.61 +0.9 594,826 - EX31_RS19815 0.61 +0.3 595,004 + EX31_RS19815 0.78 +1.6 595,005 - EX31_RS19815 0.78 -0.1 595,005 - EX31_RS19815 0.78 -0.7 595,005 - EX31_RS19815 0.78 +1.8 595,081 - EX31_RS19815 0.85 -0.4 595,081 - EX31_RS19815 0.85 +1.0 595,121 - EX31_RS19815 0.89 +0.0 595,126 + EX31_RS19815 0.89 +0.4 595,126 + EX31_RS19815 0.89 -1.0 595,127 - EX31_RS19815 0.89 +1.2 595,127 - EX31_RS19815 0.89 -0.9 595,127 - EX31_RS19815 0.89 +0.1 595,127 - EX31_RS19815 0.89 -1.4 595,131 + EX31_RS19815 0.90 -0.1 595,131 + EX31_RS19815 0.90 +1.3 595,131 + EX31_RS19815 0.90 -1.6 595,131 + EX31_RS19815 0.90 -0.9 595,131 + EX31_RS19815 0.90 -1.2 595,131 + EX31_RS19815 0.90 -0.6 595,131 + EX31_RS19815 0.90 +0.1 595,131 + EX31_RS19815 0.90 +0.6 595,131 + EX31_RS19815 0.90 -0.2 595,132 - EX31_RS19815 0.90 +0.6 595,132 - EX31_RS19815 0.90 +0.8 595,132 - EX31_RS19815 0.90 -1.0 595,132 - EX31_RS19815 0.90 -1.4 595,132 - EX31_RS19815 0.90 +0.3 595,132 - EX31_RS19815 0.90 +0.5 595,135 + -0.6 595,136 - -0.9 595,136 - +1.0 595,215 + -0.3 595,215 + -0.6 595,216 - -0.6 595,216 - -0.1 595,255 - +1.0 595,422 - EX31_RS19820 0.15 -0.4 595,534 - EX31_RS19820 0.25 +0.1 595,534 - EX31_RS19820 0.25 +1.2 595,535 + EX31_RS19820 0.25 -0.0 595,535 + EX31_RS19820 0.25 -1.1 595,535 + EX31_RS19820 0.25 +1.2 595,535 + EX31_RS19820 0.25 -0.8 595,535 + EX31_RS19820 0.25 -0.8 595,535 + EX31_RS19820 0.25 +0.5 595,535 + EX31_RS19820 0.25 -0.3 595,535 + EX31_RS19820 0.25 +1.7 595,535 + EX31_RS19820 0.25 +2.0 595,535 + EX31_RS19820 0.25 -2.0 595,535 + EX31_RS19820 0.25 +0.1 595,535 + EX31_RS19820 0.25 -1.4 595,535 + EX31_RS19820 0.25 -0.6 595,535 + EX31_RS19820 0.25 +0.8 595,536 - EX31_RS19820 0.25 +0.2 595,536 - EX31_RS19820 0.25 -0.2 595,536 - EX31_RS19820 0.25 +0.2 595,536 - EX31_RS19820 0.25 -1.4 595,536 - EX31_RS19820 0.25 +1.0 595,559 + EX31_RS19820 0.27 +0.8 595,559 + EX31_RS19820 0.27 -0.2 595,560 - EX31_RS19820 0.27 +0.6 595,560 - EX31_RS19820 0.27 +1.7 595,637 + EX31_RS19820 0.34 +0.2 595,637 + EX31_RS19820 0.34 -1.8 595,637 + EX31_RS19820 0.34 -1.1 595,637 + EX31_RS19820 0.34 +2.0 595,637 + EX31_RS19820 0.34 +2.6 595,637 + EX31_RS19820 0.34 -0.7 595,637 + EX31_RS19820 0.34 +0.6 595,638 - EX31_RS19820 0.34 +0.7 595,638 - EX31_RS19820 0.34 -0.0 595,638 - EX31_RS19820 0.34 -1.8 595,748 + EX31_RS19820 0.43 +0.8 595,749 - EX31_RS19820 0.43 -0.6 595,806 + EX31_RS19820 0.48 +0.4 595,931 + EX31_RS19820 0.59 +2.0 595,932 - EX31_RS19820 0.59 +0.5 595,934 + EX31_RS19820 0.59 +0.5 595,935 - EX31_RS19820 0.59 -0.2 596,035 - EX31_RS19820 0.67 -0.8 596,110 + EX31_RS19820 0.74 +0.3 596,110 + EX31_RS19820 0.74 -1.4 596,111 - EX31_RS19820 0.74 +0.4 596,189 + EX31_RS19820 0.80 +0.6 596,189 + EX31_RS19820 0.80 -0.1 596,189 + EX31_RS19820 0.80 +0.6 596,190 - EX31_RS19820 0.81 +0.6
Or see this region's nucleotide sequence