Strain Fitness in Rahnella sp. WP5 around EX31_RS19105

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19100 and EX31_RS19105 are separated by 249 nucleotidesEX31_RS19105 and EX31_RS19110 are separated by 214 nucleotides EX31_RS19100: EX31_RS19100 - FCD domain-containing protein, at 412,990 to 413,721 _RS19100 EX31_RS19105: EX31_RS19105 - hypothetical protein, at 413,971 to 414,282 _RS19105 EX31_RS19110: EX31_RS19110 - GTP-binding protein, at 414,497 to 415,471 _RS19110 Position (kb) 413 414 415Strain fitness (log2 ratio) -2 -1 0 1 2 3at 412.974 kb on + strandat 412.974 kb on + strandat 412.974 kb on + strandat 412.975 kb on - strandat 412.975 kb on - strandat 413.066 kb on - strand, within EX31_RS19100at 413.073 kb on + strand, within EX31_RS19100at 413.074 kb on - strand, within EX31_RS19100at 413.074 kb on - strand, within EX31_RS19100at 413.074 kb on - strand, within EX31_RS19100at 413.074 kb on - strand, within EX31_RS19100at 413.137 kb on + strand, within EX31_RS19100at 413.138 kb on - strand, within EX31_RS19100at 413.392 kb on - strand, within EX31_RS19100at 413.392 kb on - strand, within EX31_RS19100at 413.392 kb on - strand, within EX31_RS19100at 413.458 kb on + strand, within EX31_RS19100at 413.458 kb on + strand, within EX31_RS19100at 413.462 kb on - strand, within EX31_RS19100at 413.505 kb on + strand, within EX31_RS19100at 413.524 kb on + strand, within EX31_RS19100at 413.524 kb on + strand, within EX31_RS19100at 413.524 kb on + strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.525 kb on - strand, within EX31_RS19100at 413.528 kb on + strand, within EX31_RS19100at 413.529 kb on - strand, within EX31_RS19100at 413.529 kb on - strand, within EX31_RS19100at 413.529 kb on - strand, within EX31_RS19100at 413.545 kb on - strand, within EX31_RS19100at 413.597 kb on - strand, within EX31_RS19100at 413.663 kb on + strandat 413.663 kb on + strandat 413.664 kb on - strandat 413.689 kb on + strandat 413.689 kb on + strandat 413.690 kb on - strandat 413.702 kb on - strandat 413.711 kb on + strandat 413.712 kb on - strandat 413.791 kb on + strandat 413.804 kb on + strandat 413.838 kb on + strandat 413.839 kb on - strandat 413.904 kb on + strandat 413.905 kb on - strandat 413.905 kb on - strandat 413.905 kb on - strandat 413.905 kb on - strandat 413.951 kb on + strandat 413.952 kb on - strandat 413.952 kb on - strandat 413.952 kb on - strandat 413.958 kb on + strandat 413.959 kb on - strandat 413.959 kb on - strandat 413.973 kb on - strandat 413.973 kb on - strandat 413.973 kb on - strandat 413.973 kb on - strandat 413.977 kb on - strandat 413.977 kb on - strandat 413.978 kb on + strandat 413.979 kb on - strandat 414.012 kb on + strand, within EX31_RS19105at 414.013 kb on - strand, within EX31_RS19105at 414.013 kb on - strand, within EX31_RS19105at 414.015 kb on + strand, within EX31_RS19105at 414.016 kb on - strand, within EX31_RS19105at 414.016 kb on - strand, within EX31_RS19105at 414.018 kb on + strand, within EX31_RS19105at 414.018 kb on + strand, within EX31_RS19105at 414.019 kb on - strand, within EX31_RS19105at 414.087 kb on + strand, within EX31_RS19105at 414.141 kb on + strand, within EX31_RS19105at 414.141 kb on + strand, within EX31_RS19105at 414.142 kb on - strand, within EX31_RS19105at 414.142 kb on - strand, within EX31_RS19105at 414.142 kb on - strand, within EX31_RS19105at 414.142 kb on - strand, within EX31_RS19105at 414.142 kb on - strand, within EX31_RS19105at 414.190 kb on - strand, within EX31_RS19105at 414.190 kb on - strand, within EX31_RS19105at 414.195 kb on + strand, within EX31_RS19105at 414.196 kb on - strand, within EX31_RS19105at 414.262 kb on + strandat 414.262 kb on + strandat 414.262 kb on + strandat 414.262 kb on + strandat 414.271 kb on - strandat 414.271 kb on - strandat 414.271 kb on - strandat 414.298 kb on + strandat 414.298 kb on + strandat 414.298 kb on + strandat 414.305 kb on + strandat 414.339 kb on + strandat 414.343 kb on - strandat 414.343 kb on - strandat 414.343 kb on - strandat 414.348 kb on + strandat 414.348 kb on + strandat 414.348 kb on + strandat 414.359 kb on - strandat 414.420 kb on + strandat 414.420 kb on + strandat 414.420 kb on + strandat 414.420 kb on + strandat 414.421 kb on - strandat 414.421 kb on - strandat 414.421 kb on - strandat 414.421 kb on - strandat 414.421 kb on - strandat 414.639 kb on + strand, within EX31_RS19110at 414.640 kb on - strand, within EX31_RS19110at 414.640 kb on - strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.727 kb on + strand, within EX31_RS19110at 414.728 kb on - strand, within EX31_RS19110at 414.728 kb on - strand, within EX31_RS19110at 414.728 kb on - strand, within EX31_RS19110at 414.728 kb on - strand, within EX31_RS19110at 414.732 kb on + strand, within EX31_RS19110at 414.733 kb on - strand, within EX31_RS19110at 414.746 kb on - strand, within EX31_RS19110at 414.765 kb on + strand, within EX31_RS19110at 414.825 kb on - strand, within EX31_RS19110at 414.880 kb on - strand, within EX31_RS19110at 414.880 kb on - strand, within EX31_RS19110at 414.940 kb on + strand, within EX31_RS19110at 414.952 kb on + strand, within EX31_RS19110at 414.952 kb on + strand, within EX31_RS19110at 414.952 kb on + strand, within EX31_RS19110at 414.953 kb on - strand, within EX31_RS19110at 414.953 kb on - strand, within EX31_RS19110at 414.953 kb on - strand, within EX31_RS19110at 414.953 kb on - strand, within EX31_RS19110at 414.953 kb on - strand, within EX31_RS19110at 414.953 kb on - strand, within EX31_RS19110at 415.065 kb on + strand, within EX31_RS19110at 415.065 kb on + strand, within EX31_RS19110at 415.065 kb on + strand, within EX31_RS19110at 415.065 kb on + strand, within EX31_RS19110at 415.065 kb on + strand, within EX31_RS19110at 415.065 kb on + strand, within EX31_RS19110at 415.065 kb on + strand, within EX31_RS19110at 415.066 kb on - strand, within EX31_RS19110at 415.066 kb on - strand, within EX31_RS19110at 415.066 kb on - strand, within EX31_RS19110at 415.066 kb on - strand, within EX31_RS19110at 415.066 kb on - strand, within EX31_RS19110at 415.066 kb on - strand, within EX31_RS19110at 415.108 kb on + strand, within EX31_RS19110at 415.109 kb on - strand, within EX31_RS19110at 415.109 kb on - strand, within EX31_RS19110at 415.205 kb on + strand, within EX31_RS19110at 415.205 kb on + strand, within EX31_RS19110at 415.206 kb on - strand, within EX31_RS19110at 415.207 kb on + strand, within EX31_RS19110at 415.224 kb on + strand, within EX31_RS19110at 415.224 kb on + strand, within EX31_RS19110at 415.224 kb on + strand, within EX31_RS19110at 415.224 kb on + strand, within EX31_RS19110at 415.224 kb on + strand, within EX31_RS19110at 415.225 kb on - strand, within EX31_RS19110at 415.225 kb on - strand, within EX31_RS19110

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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412,974 + +0.9
412,974 + -0.1
412,974 + -1.7
412,975 - +0.3
412,975 - +0.4
413,066 - EX31_RS19100 0.10 +2.5
413,073 + EX31_RS19100 0.11 +0.6
413,074 - EX31_RS19100 0.11 -1.6
413,074 - EX31_RS19100 0.11 -0.3
413,074 - EX31_RS19100 0.11 -0.3
413,074 - EX31_RS19100 0.11 +0.9
413,137 + EX31_RS19100 0.20 +0.9
413,138 - EX31_RS19100 0.20 -1.1
413,392 - EX31_RS19100 0.55 +0.9
413,392 - EX31_RS19100 0.55 +0.2
413,392 - EX31_RS19100 0.55 +0.6
413,458 + EX31_RS19100 0.64 -1.4
413,458 + EX31_RS19100 0.64 +0.9
413,462 - EX31_RS19100 0.64 -0.1
413,505 + EX31_RS19100 0.70 -1.3
413,524 + EX31_RS19100 0.73 +0.8
413,524 + EX31_RS19100 0.73 +0.6
413,524 + EX31_RS19100 0.73 +1.6
413,525 - EX31_RS19100 0.73 -0.0
413,525 - EX31_RS19100 0.73 +0.9
413,525 - EX31_RS19100 0.73 -0.1
413,525 - EX31_RS19100 0.73 -1.1
413,525 - EX31_RS19100 0.73 -0.1
413,525 - EX31_RS19100 0.73 +0.3
413,525 - EX31_RS19100 0.73 +0.2
413,525 - EX31_RS19100 0.73 -0.8
413,525 - EX31_RS19100 0.73 +1.2
413,525 - EX31_RS19100 0.73 -0.1
413,525 - EX31_RS19100 0.73 -0.1
413,525 - EX31_RS19100 0.73 +1.0
413,525 - EX31_RS19100 0.73 -1.2
413,528 + EX31_RS19100 0.73 +0.9
413,529 - EX31_RS19100 0.74 -1.7
413,529 - EX31_RS19100 0.74 -0.3
413,529 - EX31_RS19100 0.74 -0.8
413,545 - EX31_RS19100 0.76 +1.1
413,597 - EX31_RS19100 0.83 -0.9
413,663 + -1.3
413,663 + -1.1
413,664 - +0.3
413,689 + +0.1
413,689 + +0.6
413,690 - +0.1
413,702 - +0.4
413,711 + +1.3
413,712 - -1.4
413,791 + -0.7
413,804 + -0.7
413,838 + +1.3
413,839 - -1.3
413,904 + +0.9
413,905 - -1.6
413,905 - -1.0
413,905 - +0.0
413,905 - -0.7
413,951 + -0.1
413,952 - -0.2
413,952 - -0.1
413,952 - -0.9
413,958 + +0.9
413,959 - +0.9
413,959 - -0.7
413,973 - -0.3
413,973 - +0.8
413,973 - +0.1
413,973 - +0.0
413,977 - -0.9
413,977 - +1.9
413,978 + +0.6
413,979 - +0.9
414,012 + EX31_RS19105 0.13 +2.8
414,013 - EX31_RS19105 0.13 +1.7
414,013 - EX31_RS19105 0.13 +0.1
414,015 + EX31_RS19105 0.14 +0.9
414,016 - EX31_RS19105 0.14 +0.4
414,016 - EX31_RS19105 0.14 +0.5
414,018 + EX31_RS19105 0.15 -0.5
414,018 + EX31_RS19105 0.15 -0.9
414,019 - EX31_RS19105 0.15 +0.9
414,087 + EX31_RS19105 0.37 +0.7
414,141 + EX31_RS19105 0.54 +0.3
414,141 + EX31_RS19105 0.54 +0.9
414,142 - EX31_RS19105 0.55 +1.5
414,142 - EX31_RS19105 0.55 -1.4
414,142 - EX31_RS19105 0.55 -0.9
414,142 - EX31_RS19105 0.55 +1.4
414,142 - EX31_RS19105 0.55 +0.3
414,190 - EX31_RS19105 0.70 +1.5
414,190 - EX31_RS19105 0.70 +0.9
414,195 + EX31_RS19105 0.72 +1.1
414,196 - EX31_RS19105 0.72 +1.3
414,262 + +0.1
414,262 + +1.3
414,262 + -1.0
414,262 + -1.1
414,271 - -0.7
414,271 - +0.5
414,271 - -0.8
414,298 + -0.7
414,298 + +1.3
414,298 + -0.1
414,305 + +0.5
414,339 + +0.8
414,343 - -2.1
414,343 - +0.4
414,343 - -1.0
414,348 + -0.0
414,348 + -0.6
414,348 + -0.6
414,359 - -1.1
414,420 + -0.2
414,420 + -0.7
414,420 + -0.6
414,420 + +0.6
414,421 - +3.1
414,421 - +0.6
414,421 - +0.2
414,421 - +0.2
414,421 - +1.5
414,639 + EX31_RS19110 0.15 +0.6
414,640 - EX31_RS19110 0.15 -0.7
414,640 - EX31_RS19110 0.15 +0.0
414,727 + EX31_RS19110 0.24 -0.4
414,727 + EX31_RS19110 0.24 +1.1
414,727 + EX31_RS19110 0.24 +0.5
414,727 + EX31_RS19110 0.24 +0.6
414,727 + EX31_RS19110 0.24 +1.2
414,727 + EX31_RS19110 0.24 -1.0
414,727 + EX31_RS19110 0.24 -0.2
414,727 + EX31_RS19110 0.24 -2.1
414,727 + EX31_RS19110 0.24 +1.7
414,727 + EX31_RS19110 0.24 +0.7
414,728 - EX31_RS19110 0.24 +1.9
414,728 - EX31_RS19110 0.24 +0.2
414,728 - EX31_RS19110 0.24 -1.7
414,728 - EX31_RS19110 0.24 -2.6
414,732 + EX31_RS19110 0.24 -0.0
414,733 - EX31_RS19110 0.24 -0.3
414,746 - EX31_RS19110 0.26 -1.2
414,765 + EX31_RS19110 0.27 -1.0
414,825 - EX31_RS19110 0.34 +0.7
414,880 - EX31_RS19110 0.39 +0.3
414,880 - EX31_RS19110 0.39 +1.9
414,940 + EX31_RS19110 0.45 +1.5
414,952 + EX31_RS19110 0.47 -0.2
414,952 + EX31_RS19110 0.47 -0.7
414,952 + EX31_RS19110 0.47 +1.7
414,953 - EX31_RS19110 0.47 -0.4
414,953 - EX31_RS19110 0.47 -0.7
414,953 - EX31_RS19110 0.47 +0.4
414,953 - EX31_RS19110 0.47 +0.4
414,953 - EX31_RS19110 0.47 -0.3
414,953 - EX31_RS19110 0.47 -0.6
415,065 + EX31_RS19110 0.58 +1.5
415,065 + EX31_RS19110 0.58 -0.3
415,065 + EX31_RS19110 0.58 +0.9
415,065 + EX31_RS19110 0.58 +0.3
415,065 + EX31_RS19110 0.58 -0.0
415,065 + EX31_RS19110 0.58 -1.4
415,065 + EX31_RS19110 0.58 -0.4
415,066 - EX31_RS19110 0.58 +0.0
415,066 - EX31_RS19110 0.58 +0.9
415,066 - EX31_RS19110 0.58 -0.1
415,066 - EX31_RS19110 0.58 -1.1
415,066 - EX31_RS19110 0.58 -0.4
415,066 - EX31_RS19110 0.58 +2.3
415,108 + EX31_RS19110 0.63 +1.1
415,109 - EX31_RS19110 0.63 +0.6
415,109 - EX31_RS19110 0.63 -0.5
415,205 + EX31_RS19110 0.73 -1.9
415,205 + EX31_RS19110 0.73 -2.3
415,206 - EX31_RS19110 0.73 -0.5
415,207 + EX31_RS19110 0.73 +0.6
415,224 + EX31_RS19110 0.75 -1.4
415,224 + EX31_RS19110 0.75 -0.4
415,224 + EX31_RS19110 0.75 +0.7
415,224 + EX31_RS19110 0.75 +0.9
415,224 + EX31_RS19110 0.75 -1.1
415,225 - EX31_RS19110 0.75 +1.0
415,225 - EX31_RS19110 0.75 +0.9

Or see this region's nucleotide sequence