Strain Fitness in Rahnella sp. WP5 around EX31_RS13350

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS13345 and EX31_RS13350 are separated by 491 nucleotidesEX31_RS13350 and EX31_RS13355 are separated by 392 nucleotides EX31_RS13345: EX31_RS13345 - hypothetical protein, at 101,146 to 101,469 _RS13345 EX31_RS13350: EX31_RS13350 - hypothetical protein, at 101,961 to 102,362 _RS13350 EX31_RS13355: EX31_RS13355 - hypothetical protein, at 102,755 to 103,468 _RS13355 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 100.987 kb on + strandat 100.988 kb on - strandat 100.988 kb on - strandat 100.997 kb on - strandat 101.022 kb on + strandat 101.022 kb on + strandat 101.086 kb on + strandat 101.087 kb on - strandat 101.147 kb on + strandat 101.148 kb on - strandat 101.236 kb on + strand, within EX31_RS13345at 101.236 kb on + strand, within EX31_RS13345at 101.237 kb on - strand, within EX31_RS13345at 101.237 kb on - strand, within EX31_RS13345at 101.240 kb on - strand, within EX31_RS13345at 101.259 kb on + strand, within EX31_RS13345at 101.260 kb on - strand, within EX31_RS13345at 101.260 kb on - strand, within EX31_RS13345at 101.260 kb on - strand, within EX31_RS13345at 101.260 kb on - strand, within EX31_RS13345at 101.260 kb on - strand, within EX31_RS13345at 101.261 kb on + strand, within EX31_RS13345at 101.261 kb on + strand, within EX31_RS13345at 101.262 kb on - strand, within EX31_RS13345at 101.262 kb on - strand, within EX31_RS13345at 101.311 kb on + strand, within EX31_RS13345at 101.311 kb on + strand, within EX31_RS13345at 101.312 kb on - strand, within EX31_RS13345at 101.312 kb on - strand, within EX31_RS13345at 101.312 kb on - strand, within EX31_RS13345at 101.312 kb on - strand, within EX31_RS13345at 101.336 kb on + strand, within EX31_RS13345at 101.336 kb on + strand, within EX31_RS13345at 101.336 kb on + strand, within EX31_RS13345at 101.337 kb on - strand, within EX31_RS13345at 101.337 kb on - strand, within EX31_RS13345at 101.337 kb on - strand, within EX31_RS13345at 101.399 kb on + strand, within EX31_RS13345at 101.464 kb on + strandat 101.465 kb on - strandat 101.490 kb on + strandat 101.530 kb on + strandat 101.562 kb on + strandat 101.578 kb on + strandat 101.660 kb on - strandat 101.825 kb on - strandat 101.900 kb on + strandat 101.997 kb on - strandat 101.999 kb on - strandat 102.019 kb on + strand, within EX31_RS13350at 102.019 kb on + strand, within EX31_RS13350at 102.022 kb on - strand, within EX31_RS13350at 102.022 kb on - strand, within EX31_RS13350at 102.023 kb on + strand, within EX31_RS13350at 102.023 kb on + strand, within EX31_RS13350at 102.045 kb on + strand, within EX31_RS13350at 102.046 kb on - strand, within EX31_RS13350at 102.116 kb on + strand, within EX31_RS13350at 102.117 kb on - strand, within EX31_RS13350at 102.154 kb on + strand, within EX31_RS13350at 102.154 kb on + strand, within EX31_RS13350at 102.155 kb on - strand, within EX31_RS13350at 102.155 kb on - strand, within EX31_RS13350at 102.155 kb on - strand, within EX31_RS13350at 102.160 kb on + strand, within EX31_RS13350at 102.161 kb on - strand, within EX31_RS13350at 102.161 kb on - strand, within EX31_RS13350at 102.161 kb on - strand, within EX31_RS13350at 102.163 kb on + strand, within EX31_RS13350at 102.212 kb on - strand, within EX31_RS13350at 102.228 kb on - strand, within EX31_RS13350at 102.228 kb on - strand, within EX31_RS13350at 102.236 kb on + strand, within EX31_RS13350at 102.248 kb on - strand, within EX31_RS13350at 102.248 kb on - strand, within EX31_RS13350at 102.272 kb on + strand, within EX31_RS13350at 102.331 kb on + strandat 102.332 kb on - strandat 102.474 kb on + strandat 102.559 kb on + strandat 102.675 kb on + strandat 102.676 kb on - strandat 102.694 kb on + strandat 102.694 kb on + strandat 102.695 kb on - strandat 102.697 kb on - strandat 102.710 kb on - strandat 102.721 kb on + strandat 102.771 kb on - strandat 102.771 kb on - strandat 102.774 kb on + strandat 102.774 kb on + strandat 102.774 kb on + strandat 102.775 kb on - strandat 102.775 kb on - strandat 102.775 kb on - strandat 102.775 kb on - strandat 102.804 kb on + strandat 102.832 kb on + strand, within EX31_RS13355at 102.832 kb on + strand, within EX31_RS13355at 102.832 kb on + strand, within EX31_RS13355at 102.832 kb on + strand, within EX31_RS13355at 102.832 kb on + strand, within EX31_RS13355at 102.833 kb on - strand, within EX31_RS13355at 102.833 kb on - strand, within EX31_RS13355at 102.833 kb on - strand, within EX31_RS13355at 102.833 kb on - strand, within EX31_RS13355at 102.833 kb on - strand, within EX31_RS13355at 102.836 kb on + strand, within EX31_RS13355at 102.836 kb on + strand, within EX31_RS13355at 102.836 kb on + strand, within EX31_RS13355at 102.836 kb on + strand, within EX31_RS13355at 102.837 kb on - strand, within EX31_RS13355at 102.837 kb on - strand, within EX31_RS13355at 102.837 kb on - strand, within EX31_RS13355at 102.865 kb on + strand, within EX31_RS13355at 102.868 kb on + strand, within EX31_RS13355at 102.869 kb on - strand, within EX31_RS13355at 102.899 kb on + strand, within EX31_RS13355at 102.901 kb on + strand, within EX31_RS13355at 102.946 kb on - strand, within EX31_RS13355at 103.009 kb on - strand, within EX31_RS13355at 103.021 kb on - strand, within EX31_RS13355at 103.023 kb on - strand, within EX31_RS13355at 103.023 kb on - strand, within EX31_RS13355at 103.041 kb on + strand, within EX31_RS13355at 103.045 kb on + strand, within EX31_RS13355at 103.045 kb on + strand, within EX31_RS13355at 103.045 kb on + strand, within EX31_RS13355at 103.045 kb on + strand, within EX31_RS13355at 103.112 kb on - strand, within EX31_RS13355at 103.189 kb on + strand, within EX31_RS13355at 103.189 kb on + strand, within EX31_RS13355at 103.189 kb on + strand, within EX31_RS13355at 103.190 kb on - strand, within EX31_RS13355at 103.190 kb on - strand, within EX31_RS13355at 103.226 kb on - strand, within EX31_RS13355at 103.226 kb on - strand, within EX31_RS13355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
100,987 + -0.6
100,988 - +0.2
100,988 - +0.5
100,997 - +0.4
101,022 + -0.5
101,022 + -0.3
101,086 + +0.3
101,087 - +0.3
101,147 + +0.8
101,148 - +0.5
101,236 + EX31_RS13345 0.28 +0.2
101,236 + EX31_RS13345 0.28 +0.8
101,237 - EX31_RS13345 0.28 +2.5
101,237 - EX31_RS13345 0.28 +0.1
101,240 - EX31_RS13345 0.29 +0.6
101,259 + EX31_RS13345 0.35 -0.9
101,260 - EX31_RS13345 0.35 -0.8
101,260 - EX31_RS13345 0.35 -0.4
101,260 - EX31_RS13345 0.35 -0.7
101,260 - EX31_RS13345 0.35 -1.4
101,260 - EX31_RS13345 0.35 +0.7
101,261 + EX31_RS13345 0.35 +1.2
101,261 + EX31_RS13345 0.35 +1.0
101,262 - EX31_RS13345 0.36 -0.2
101,262 - EX31_RS13345 0.36 -0.8
101,311 + EX31_RS13345 0.51 -0.2
101,311 + EX31_RS13345 0.51 -1.7
101,312 - EX31_RS13345 0.51 +0.4
101,312 - EX31_RS13345 0.51 +0.3
101,312 - EX31_RS13345 0.51 -0.4
101,312 - EX31_RS13345 0.51 +0.0
101,336 + EX31_RS13345 0.59 +0.1
101,336 + EX31_RS13345 0.59 -0.2
101,336 + EX31_RS13345 0.59 +0.0
101,337 - EX31_RS13345 0.59 -0.8
101,337 - EX31_RS13345 0.59 -0.2
101,337 - EX31_RS13345 0.59 +0.6
101,399 + EX31_RS13345 0.78 -0.9
101,464 + -2.0
101,465 - +1.2
101,490 + +0.3
101,530 + +0.1
101,562 + -1.2
101,578 + -0.2
101,660 - -0.6
101,825 - -0.2
101,900 + -1.2
101,997 - +0.6
101,999 - -2.0
102,019 + EX31_RS13350 0.14 +0.7
102,019 + EX31_RS13350 0.14 -0.3
102,022 - EX31_RS13350 0.15 +0.3
102,022 - EX31_RS13350 0.15 +0.4
102,023 + EX31_RS13350 0.15 +0.2
102,023 + EX31_RS13350 0.15 +0.2
102,045 + EX31_RS13350 0.21 -1.2
102,046 - EX31_RS13350 0.21 -0.4
102,116 + EX31_RS13350 0.39 -1.2
102,117 - EX31_RS13350 0.39 -2.3
102,154 + EX31_RS13350 0.48 -0.6
102,154 + EX31_RS13350 0.48 -2.0
102,155 - EX31_RS13350 0.48 +1.2
102,155 - EX31_RS13350 0.48 +2.4
102,155 - EX31_RS13350 0.48 -0.5
102,160 + EX31_RS13350 0.50 +1.2
102,161 - EX31_RS13350 0.50 -1.2
102,161 - EX31_RS13350 0.50 +0.8
102,161 - EX31_RS13350 0.50 +1.5
102,163 + EX31_RS13350 0.50 +1.2
102,212 - EX31_RS13350 0.62 +1.6
102,228 - EX31_RS13350 0.66 -0.2
102,228 - EX31_RS13350 0.66 -0.4
102,236 + EX31_RS13350 0.68 +0.9
102,248 - EX31_RS13350 0.71 +0.6
102,248 - EX31_RS13350 0.71 +1.6
102,272 + EX31_RS13350 0.77 +1.3
102,331 + +0.2
102,332 - +1.4
102,474 + -0.2
102,559 + +1.2
102,675 + +0.4
102,676 - -0.6
102,694 + +1.2
102,694 + +0.2
102,695 - +1.7
102,697 - +0.1
102,710 - -0.3
102,721 + +0.1
102,771 - +1.4
102,771 - -0.8
102,774 + +1.3
102,774 + -1.1
102,774 + +0.2
102,775 - +2.2
102,775 - -0.6
102,775 - +0.6
102,775 - +0.2
102,804 + +0.0
102,832 + EX31_RS13355 0.11 -0.1
102,832 + EX31_RS13355 0.11 -2.0
102,832 + EX31_RS13355 0.11 +0.0
102,832 + EX31_RS13355 0.11 -1.3
102,832 + EX31_RS13355 0.11 -1.7
102,833 - EX31_RS13355 0.11 +0.0
102,833 - EX31_RS13355 0.11 +2.5
102,833 - EX31_RS13355 0.11 -1.3
102,833 - EX31_RS13355 0.11 -1.2
102,833 - EX31_RS13355 0.11 -1.0
102,836 + EX31_RS13355 0.11 +0.3
102,836 + EX31_RS13355 0.11 -1.4
102,836 + EX31_RS13355 0.11 -0.5
102,836 + EX31_RS13355 0.11 +1.2
102,837 - EX31_RS13355 0.11 -0.4
102,837 - EX31_RS13355 0.11 +3.2
102,837 - EX31_RS13355 0.11 +0.2
102,865 + EX31_RS13355 0.15 +0.7
102,868 + EX31_RS13355 0.16 -0.6
102,869 - EX31_RS13355 0.16 +0.4
102,899 + EX31_RS13355 0.20 +0.1
102,901 + EX31_RS13355 0.20 +0.8
102,946 - EX31_RS13355 0.27 -0.9
103,009 - EX31_RS13355 0.36 +1.2
103,021 - EX31_RS13355 0.37 +0.6
103,023 - EX31_RS13355 0.38 +1.1
103,023 - EX31_RS13355 0.38 +0.2
103,041 + EX31_RS13355 0.40 +1.3
103,045 + EX31_RS13355 0.41 +0.4
103,045 + EX31_RS13355 0.41 -1.0
103,045 + EX31_RS13355 0.41 +0.8
103,045 + EX31_RS13355 0.41 +0.4
103,112 - EX31_RS13355 0.50 +0.8
103,189 + EX31_RS13355 0.61 -0.4
103,189 + EX31_RS13355 0.61 +0.7
103,189 + EX31_RS13355 0.61 -0.4
103,190 - EX31_RS13355 0.61 +0.2
103,190 - EX31_RS13355 0.61 -0.4
103,226 - EX31_RS13355 0.66 -0.7
103,226 - EX31_RS13355 0.66 +1.8

Or see this region's nucleotide sequence