Strain Fitness in Rahnella sp. WP5 around EX31_RS12710

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12700 and EX31_RS12705 are separated by 30 nucleotidesEX31_RS12705 and EX31_RS12710 overlap by 14 nucleotidesEX31_RS12710 and EX31_RS12715 are separated by 42 nucleotides EX31_RS12700: EX31_RS12700 - extracellular solute-binding protein, at 212,316 to 213,620 _RS12700 EX31_RS12705: EX31_RS12705 - sugar ABC transporter permease, at 213,651 to 214,532 _RS12705 EX31_RS12710: EX31_RS12710 - carbohydrate ABC transporter permease, at 214,519 to 215,364 _RS12710 EX31_RS12715: EX31_RS12715 - zinc-binding alcohol dehydrogenase, at 215,407 to 216,459 _RS12715 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.662 kb on + strandat 213.662 kb on + strandat 213.824 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.828 kb on + strand, within EX31_RS12705at 213.829 kb on - strand, within EX31_RS12705at 213.829 kb on - strand, within EX31_RS12705at 213.829 kb on - strand, within EX31_RS12705at 213.829 kb on - strand, within EX31_RS12705at 213.829 kb on - strand, within EX31_RS12705at 213.829 kb on - strand, within EX31_RS12705at 213.829 kb on - strand, within EX31_RS12705at 213.829 kb on - strand, within EX31_RS12705at 213.858 kb on + strand, within EX31_RS12705at 213.858 kb on + strand, within EX31_RS12705at 213.996 kb on + strand, within EX31_RS12705at 213.996 kb on + strand, within EX31_RS12705at 214.021 kb on + strand, within EX31_RS12705at 214.021 kb on + strand, within EX31_RS12705at 214.035 kb on + strand, within EX31_RS12705at 214.035 kb on + strand, within EX31_RS12705at 214.035 kb on + strand, within EX31_RS12705at 214.035 kb on + strand, within EX31_RS12705at 214.035 kb on + strand, within EX31_RS12705at 214.035 kb on + strand, within EX31_RS12705at 214.035 kb on + strand, within EX31_RS12705at 214.036 kb on - strand, within EX31_RS12705at 214.036 kb on - strand, within EX31_RS12705at 214.036 kb on - strand, within EX31_RS12705at 214.036 kb on - strand, within EX31_RS12705at 214.170 kb on + strand, within EX31_RS12705at 214.171 kb on - strand, within EX31_RS12705at 214.171 kb on - strand, within EX31_RS12705at 214.179 kb on + strand, within EX31_RS12705at 214.179 kb on + strand, within EX31_RS12705at 214.180 kb on - strand, within EX31_RS12705at 214.187 kb on + strand, within EX31_RS12705at 214.188 kb on - strand, within EX31_RS12705at 214.221 kb on - strand, within EX31_RS12705at 214.230 kb on + strand, within EX31_RS12705at 214.230 kb on + strand, within EX31_RS12705at 214.231 kb on - strand, within EX31_RS12705at 214.299 kb on - strand, within EX31_RS12705at 214.299 kb on - strand, within EX31_RS12705at 214.347 kb on + strand, within EX31_RS12705at 214.347 kb on + strand, within EX31_RS12705at 214.347 kb on + strand, within EX31_RS12705at 214.347 kb on + strand, within EX31_RS12705at 214.347 kb on + strand, within EX31_RS12705at 214.347 kb on + strand, within EX31_RS12705at 214.348 kb on - strand, within EX31_RS12705at 214.348 kb on - strand, within EX31_RS12705at 214.348 kb on - strand, within EX31_RS12705at 214.348 kb on - strand, within EX31_RS12705at 214.348 kb on - strand, within EX31_RS12705at 214.348 kb on - strand, within EX31_RS12705at 214.348 kb on - strand, within EX31_RS12705at 214.348 kb on - strand, within EX31_RS12705at 214.348 kb on - strand, within EX31_RS12705at 214.401 kb on + strand, within EX31_RS12705at 214.401 kb on + strand, within EX31_RS12705at 214.401 kb on + strand, within EX31_RS12705at 214.401 kb on + strand, within EX31_RS12705at 214.401 kb on + strand, within EX31_RS12705at 214.401 kb on + strand, within EX31_RS12705at 214.401 kb on + strand, within EX31_RS12705at 214.401 kb on + strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.402 kb on - strand, within EX31_RS12705at 214.408 kb on - strand, within EX31_RS12705at 214.410 kb on - strand, within EX31_RS12705at 214.454 kb on - strandat 214.515 kb on - strandat 214.561 kb on + strandat 214.561 kb on + strandat 214.561 kb on + strandat 214.562 kb on - strandat 214.595 kb on + strandat 214.595 kb on + strandat 214.595 kb on + strandat 214.595 kb on + strandat 214.595 kb on + strandat 214.596 kb on - strandat 214.596 kb on - strandat 214.596 kb on - strandat 214.638 kb on + strand, within EX31_RS12710at 214.696 kb on + strand, within EX31_RS12710at 214.696 kb on + strand, within EX31_RS12710at 214.697 kb on - strand, within EX31_RS12710at 214.697 kb on - strand, within EX31_RS12710at 214.697 kb on - strand, within EX31_RS12710at 214.697 kb on - strand, within EX31_RS12710at 214.738 kb on + strand, within EX31_RS12710at 214.738 kb on + strand, within EX31_RS12710at 214.739 kb on - strand, within EX31_RS12710at 214.739 kb on - strand, within EX31_RS12710at 214.810 kb on + strand, within EX31_RS12710at 214.810 kb on + strand, within EX31_RS12710at 214.811 kb on - strand, within EX31_RS12710at 214.834 kb on - strand, within EX31_RS12710at 214.865 kb on - strand, within EX31_RS12710at 214.865 kb on - strand, within EX31_RS12710at 214.865 kb on - strand, within EX31_RS12710at 214.866 kb on + strand, within EX31_RS12710at 214.867 kb on - strand, within EX31_RS12710at 214.867 kb on - strand, within EX31_RS12710at 214.873 kb on + strand, within EX31_RS12710at 214.873 kb on + strand, within EX31_RS12710at 214.873 kb on + strand, within EX31_RS12710at 214.873 kb on + strand, within EX31_RS12710at 214.873 kb on + strand, within EX31_RS12710at 214.874 kb on - strand, within EX31_RS12710at 214.874 kb on - strand, within EX31_RS12710at 214.874 kb on - strand, within EX31_RS12710at 214.874 kb on - strand, within EX31_RS12710at 214.874 kb on - strand, within EX31_RS12710at 214.918 kb on - strand, within EX31_RS12710at 214.936 kb on + strand, within EX31_RS12710at 214.936 kb on + strand, within EX31_RS12710at 214.936 kb on + strand, within EX31_RS12710at 214.937 kb on - strand, within EX31_RS12710at 214.998 kb on + strand, within EX31_RS12710at 214.999 kb on - strand, within EX31_RS12710at 214.999 kb on - strand, within EX31_RS12710at 215.086 kb on + strand, within EX31_RS12710at 215.086 kb on + strand, within EX31_RS12710at 215.086 kb on + strand, within EX31_RS12710at 215.086 kb on + strand, within EX31_RS12710at 215.087 kb on - strand, within EX31_RS12710at 215.087 kb on - strand, within EX31_RS12710at 215.087 kb on - strand, within EX31_RS12710at 215.087 kb on - strand, within EX31_RS12710at 215.134 kb on + strand, within EX31_RS12710at 215.142 kb on + strand, within EX31_RS12710at 215.142 kb on + strand, within EX31_RS12710at 215.142 kb on + strand, within EX31_RS12710at 215.143 kb on - strand, within EX31_RS12710at 215.143 kb on - strand, within EX31_RS12710at 215.143 kb on - strand, within EX31_RS12710at 215.143 kb on - strand, within EX31_RS12710at 215.161 kb on + strand, within EX31_RS12710at 215.245 kb on + strand, within EX31_RS12710at 215.245 kb on + strand, within EX31_RS12710at 215.245 kb on + strand, within EX31_RS12710at 215.246 kb on - strand, within EX31_RS12710at 215.246 kb on - strand, within EX31_RS12710at 215.246 kb on - strand, within EX31_RS12710at 215.305 kb on + strandat 215.305 kb on + strandat 215.305 kb on + strandat 215.306 kb on - strandat 215.326 kb on - strandat 215.376 kb on + strandat 215.376 kb on + strandat 215.376 kb on + strandat 215.377 kb on - strandat 215.387 kb on + strandat 215.401 kb on + strandat 215.479 kb on + strandat 215.479 kb on + strandat 215.479 kb on + strandat 215.479 kb on + strandat 215.479 kb on + strandat 215.479 kb on + strandat 215.479 kb on + strandat 215.480 kb on - strandat 215.480 kb on - strandat 215.535 kb on - strand, within EX31_RS12715at 215.724 kb on + strand, within EX31_RS12715at 215.724 kb on + strand, within EX31_RS12715at 215.725 kb on - strand, within EX31_RS12715at 215.725 kb on - strand, within EX31_RS12715at 215.725 kb on - strand, within EX31_RS12715at 215.725 kb on - strand, within EX31_RS12715at 215.728 kb on + strand, within EX31_RS12715at 215.728 kb on + strand, within EX31_RS12715at 215.729 kb on - strand, within EX31_RS12715at 215.729 kb on - strand, within EX31_RS12715at 216.163 kb on - strand, within EX31_RS12715at 216.163 kb on - strand, within EX31_RS12715at 216.169 kb on + strand, within EX31_RS12715at 216.170 kb on - strand, within EX31_RS12715at 216.170 kb on - strand, within EX31_RS12715at 216.170 kb on - strand, within EX31_RS12715at 216.170 kb on - strand, within EX31_RS12715at 216.204 kb on + strand, within EX31_RS12715at 216.229 kb on - strand, within EX31_RS12715at 216.340 kb on + strand, within EX31_RS12715

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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213,662 + +1.0
213,662 + +1.0
213,824 + EX31_RS12705 0.20 -0.2
213,828 + EX31_RS12705 0.20 +1.3
213,828 + EX31_RS12705 0.20 +0.6
213,828 + EX31_RS12705 0.20 +0.3
213,828 + EX31_RS12705 0.20 +1.3
213,828 + EX31_RS12705 0.20 +0.9
213,828 + EX31_RS12705 0.20 -0.1
213,828 + EX31_RS12705 0.20 +0.1
213,828 + EX31_RS12705 0.20 +0.6
213,828 + EX31_RS12705 0.20 -0.2
213,828 + EX31_RS12705 0.20 -0.0
213,829 - EX31_RS12705 0.20 +0.3
213,829 - EX31_RS12705 0.20 -0.3
213,829 - EX31_RS12705 0.20 +0.8
213,829 - EX31_RS12705 0.20 -2.1
213,829 - EX31_RS12705 0.20 +0.3
213,829 - EX31_RS12705 0.20 -0.2
213,829 - EX31_RS12705 0.20 -1.1
213,829 - EX31_RS12705 0.20 -0.3
213,858 + EX31_RS12705 0.23 +0.3
213,858 + EX31_RS12705 0.23 -0.1
213,996 + EX31_RS12705 0.39 +1.3
213,996 + EX31_RS12705 0.39 +0.5
214,021 + EX31_RS12705 0.42 -0.5
214,021 + EX31_RS12705 0.42 +0.9
214,035 + EX31_RS12705 0.44 +0.7
214,035 + EX31_RS12705 0.44 -1.0
214,035 + EX31_RS12705 0.44 +0.5
214,035 + EX31_RS12705 0.44 +1.3
214,035 + EX31_RS12705 0.44 +0.3
214,035 + EX31_RS12705 0.44 +0.4
214,035 + EX31_RS12705 0.44 -0.3
214,036 - EX31_RS12705 0.44 +1.7
214,036 - EX31_RS12705 0.44 -0.4
214,036 - EX31_RS12705 0.44 -0.1
214,036 - EX31_RS12705 0.44 -0.8
214,170 + EX31_RS12705 0.59 -0.7
214,171 - EX31_RS12705 0.59 +2.4
214,171 - EX31_RS12705 0.59 +0.9
214,179 + EX31_RS12705 0.60 +0.8
214,179 + EX31_RS12705 0.60 +0.7
214,180 - EX31_RS12705 0.60 -0.7
214,187 + EX31_RS12705 0.61 -0.9
214,188 - EX31_RS12705 0.61 -0.7
214,221 - EX31_RS12705 0.65 +1.3
214,230 + EX31_RS12705 0.66 +1.1
214,230 + EX31_RS12705 0.66 -1.2
214,231 - EX31_RS12705 0.66 +2.5
214,299 - EX31_RS12705 0.73 -0.1
214,299 - EX31_RS12705 0.73 -0.8
214,347 + EX31_RS12705 0.79 +0.1
214,347 + EX31_RS12705 0.79 -0.2
214,347 + EX31_RS12705 0.79 -1.1
214,347 + EX31_RS12705 0.79 -1.2
214,347 + EX31_RS12705 0.79 +1.3
214,347 + EX31_RS12705 0.79 +0.3
214,348 - EX31_RS12705 0.79 -0.4
214,348 - EX31_RS12705 0.79 +0.5
214,348 - EX31_RS12705 0.79 +0.2
214,348 - EX31_RS12705 0.79 -0.9
214,348 - EX31_RS12705 0.79 -0.7
214,348 - EX31_RS12705 0.79 -0.3
214,348 - EX31_RS12705 0.79 -0.0
214,348 - EX31_RS12705 0.79 -0.4
214,348 - EX31_RS12705 0.79 +0.7
214,401 + EX31_RS12705 0.85 +0.2
214,401 + EX31_RS12705 0.85 +0.6
214,401 + EX31_RS12705 0.85 +0.8
214,401 + EX31_RS12705 0.85 -0.5
214,401 + EX31_RS12705 0.85 +0.5
214,401 + EX31_RS12705 0.85 -1.4
214,401 + EX31_RS12705 0.85 +0.4
214,401 + EX31_RS12705 0.85 -0.4
214,402 - EX31_RS12705 0.85 -1.7
214,402 - EX31_RS12705 0.85 -0.6
214,402 - EX31_RS12705 0.85 +1.0
214,402 - EX31_RS12705 0.85 -0.1
214,402 - EX31_RS12705 0.85 -1.0
214,402 - EX31_RS12705 0.85 +0.1
214,402 - EX31_RS12705 0.85 -0.7
214,402 - EX31_RS12705 0.85 +0.5
214,402 - EX31_RS12705 0.85 -0.2
214,402 - EX31_RS12705 0.85 +0.7
214,402 - EX31_RS12705 0.85 -0.5
214,408 - EX31_RS12705 0.86 +1.6
214,410 - EX31_RS12705 0.86 -1.1
214,454 - +0.4
214,515 - -0.2
214,561 + +0.8
214,561 + +0.8
214,561 + -0.9
214,562 - -0.1
214,595 + -0.3
214,595 + +0.9
214,595 + +1.8
214,595 + -0.9
214,595 + +0.2
214,596 - +0.6
214,596 - +0.4
214,596 - -0.1
214,638 + EX31_RS12710 0.14 -0.0
214,696 + EX31_RS12710 0.21 -0.3
214,696 + EX31_RS12710 0.21 +0.1
214,697 - EX31_RS12710 0.21 -0.3
214,697 - EX31_RS12710 0.21 -0.1
214,697 - EX31_RS12710 0.21 -0.6
214,697 - EX31_RS12710 0.21 -0.1
214,738 + EX31_RS12710 0.26 -1.1
214,738 + EX31_RS12710 0.26 -0.5
214,739 - EX31_RS12710 0.26 +1.5
214,739 - EX31_RS12710 0.26 -0.1
214,810 + EX31_RS12710 0.34 -0.5
214,810 + EX31_RS12710 0.34 -1.2
214,811 - EX31_RS12710 0.35 -1.1
214,834 - EX31_RS12710 0.37 +0.3
214,865 - EX31_RS12710 0.41 -0.1
214,865 - EX31_RS12710 0.41 -0.5
214,865 - EX31_RS12710 0.41 -0.7
214,866 + EX31_RS12710 0.41 -1.5
214,867 - EX31_RS12710 0.41 -1.2
214,867 - EX31_RS12710 0.41 -0.9
214,873 + EX31_RS12710 0.42 -0.7
214,873 + EX31_RS12710 0.42 +1.0
214,873 + EX31_RS12710 0.42 +0.4
214,873 + EX31_RS12710 0.42 -0.7
214,873 + EX31_RS12710 0.42 -0.5
214,874 - EX31_RS12710 0.42 +0.1
214,874 - EX31_RS12710 0.42 -1.0
214,874 - EX31_RS12710 0.42 +0.6
214,874 - EX31_RS12710 0.42 +1.7
214,874 - EX31_RS12710 0.42 +1.6
214,918 - EX31_RS12710 0.47 +0.5
214,936 + EX31_RS12710 0.49 -0.6
214,936 + EX31_RS12710 0.49 -0.9
214,936 + EX31_RS12710 0.49 -0.2
214,937 - EX31_RS12710 0.49 -1.2
214,998 + EX31_RS12710 0.57 -0.0
214,999 - EX31_RS12710 0.57 +0.8
214,999 - EX31_RS12710 0.57 -1.5
215,086 + EX31_RS12710 0.67 +0.9
215,086 + EX31_RS12710 0.67 +1.4
215,086 + EX31_RS12710 0.67 +1.0
215,086 + EX31_RS12710 0.67 +0.0
215,087 - EX31_RS12710 0.67 +0.3
215,087 - EX31_RS12710 0.67 +0.4
215,087 - EX31_RS12710 0.67 +0.2
215,087 - EX31_RS12710 0.67 +0.7
215,134 + EX31_RS12710 0.73 -0.5
215,142 + EX31_RS12710 0.74 -1.3
215,142 + EX31_RS12710 0.74 +1.8
215,142 + EX31_RS12710 0.74 +0.1
215,143 - EX31_RS12710 0.74 +0.6
215,143 - EX31_RS12710 0.74 +0.4
215,143 - EX31_RS12710 0.74 -0.2
215,143 - EX31_RS12710 0.74 +0.1
215,161 + EX31_RS12710 0.76 -0.0
215,245 + EX31_RS12710 0.86 -0.4
215,245 + EX31_RS12710 0.86 +0.1
215,245 + EX31_RS12710 0.86 -0.0
215,246 - EX31_RS12710 0.86 +0.7
215,246 - EX31_RS12710 0.86 -0.4
215,246 - EX31_RS12710 0.86 +1.3
215,305 + +1.3
215,305 + +0.1
215,305 + +0.1
215,306 - +1.3
215,326 - +0.9
215,376 + -0.9
215,376 + -0.0
215,376 + -0.7
215,377 - +0.7
215,387 + -1.6
215,401 + -0.6
215,479 + +0.1
215,479 + +0.0
215,479 + +1.7
215,479 + -0.3
215,479 + +0.2
215,479 + +0.1
215,479 + +0.8
215,480 - -0.1
215,480 - +1.3
215,535 - EX31_RS12715 0.12 +1.5
215,724 + EX31_RS12715 0.30 -0.9
215,724 + EX31_RS12715 0.30 +0.7
215,725 - EX31_RS12715 0.30 -1.2
215,725 - EX31_RS12715 0.30 +1.4
215,725 - EX31_RS12715 0.30 +0.1
215,725 - EX31_RS12715 0.30 -0.9
215,728 + EX31_RS12715 0.30 +0.6
215,728 + EX31_RS12715 0.30 -1.0
215,729 - EX31_RS12715 0.31 +0.4
215,729 - EX31_RS12715 0.31 +0.2
216,163 - EX31_RS12715 0.72 +0.0
216,163 - EX31_RS12715 0.72 -0.4
216,169 + EX31_RS12715 0.72 +0.3
216,170 - EX31_RS12715 0.72 -0.6
216,170 - EX31_RS12715 0.72 +0.5
216,170 - EX31_RS12715 0.72 +0.1
216,170 - EX31_RS12715 0.72 -0.6
216,204 + EX31_RS12715 0.76 -0.7
216,229 - EX31_RS12715 0.78 +1.3
216,340 + EX31_RS12715 0.89 -1.5

Or see this region's nucleotide sequence