Strain Fitness in Rahnella sp. WP5 around EX31_RS09765

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09760 and EX31_RS09765 are separated by 381 nucleotidesEX31_RS09765 and EX31_RS09770 are separated by 91 nucleotides EX31_RS09760: EX31_RS09760 - D-xylose ABC transporter substrate-binding protein, at 156,807 to 157,799 _RS09760 EX31_RS09765: EX31_RS09765 - xylose isomerase, at 158,181 to 159,500 _RS09765 EX31_RS09770: EX31_RS09770 - xylulokinase, at 159,592 to 161,043 _RS09770 Position (kb) 158 159 160Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 157.354 kb on + strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.430 kb on - strand, within EX31_RS09760at 157.430 kb on - strand, within EX31_RS09760at 157.466 kb on - strand, within EX31_RS09760at 157.531 kb on + strand, within EX31_RS09760at 157.571 kb on + strand, within EX31_RS09760at 157.814 kb on + strandat 157.814 kb on + strandat 157.816 kb on + strandat 157.822 kb on + strandat 157.823 kb on - strandat 157.823 kb on - strandat 157.826 kb on + strandat 157.827 kb on - strandat 157.850 kb on + strandat 157.959 kb on + strandat 157.960 kb on - strandat 157.970 kb on + strandat 157.971 kb on - strandat 157.971 kb on - strandat 158.043 kb on + strandat 158.070 kb on + strandat 158.070 kb on + strandat 158.131 kb on + strandat 158.238 kb on - strandat 158.259 kb on + strandat 158.259 kb on + strandat 158.260 kb on - strandat 158.260 kb on - strandat 158.260 kb on - strandat 158.423 kb on + strand, within EX31_RS09765at 158.469 kb on + strand, within EX31_RS09765at 158.470 kb on - strand, within EX31_RS09765at 158.473 kb on - strand, within EX31_RS09765at 158.473 kb on - strand, within EX31_RS09765at 158.523 kb on + strand, within EX31_RS09765at 158.531 kb on + strand, within EX31_RS09765at 158.555 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.654 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.778 kb on - strand, within EX31_RS09765at 158.778 kb on - strand, within EX31_RS09765at 158.880 kb on - strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.908 kb on - strand, within EX31_RS09765at 158.908 kb on - strand, within EX31_RS09765at 158.913 kb on + strand, within EX31_RS09765at 158.913 kb on + strand, within EX31_RS09765at 158.913 kb on + strand, within EX31_RS09765at 158.914 kb on - strand, within EX31_RS09765at 158.931 kb on + strand, within EX31_RS09765at 158.931 kb on + strand, within EX31_RS09765at 159.147 kb on + strand, within EX31_RS09765at 159.147 kb on + strand, within EX31_RS09765at 159.147 kb on + strand, within EX31_RS09765at 159.148 kb on - strand, within EX31_RS09765at 159.148 kb on - strand, within EX31_RS09765at 159.148 kb on - strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.240 kb on + strand, within EX31_RS09765at 159.339 kb on + strand, within EX31_RS09765at 159.340 kb on - strand, within EX31_RS09765at 159.411 kb on + strandat 159.511 kb on + strandat 159.580 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.592 kb on - strandat 159.592 kb on - strandat 159.592 kb on - strandat 159.596 kb on - strandat 159.605 kb on + strandat 159.638 kb on + strandat 159.794 kb on + strand, within EX31_RS09770at 159.795 kb on - strand, within EX31_RS09770at 159.795 kb on - strand, within EX31_RS09770at 159.857 kb on + strand, within EX31_RS09770at 159.860 kb on + strand, within EX31_RS09770at 159.860 kb on + strand, within EX31_RS09770at 159.861 kb on - strand, within EX31_RS09770at 160.054 kb on + strand, within EX31_RS09770at 160.055 kb on - strand, within EX31_RS09770at 160.092 kb on + strand, within EX31_RS09770at 160.092 kb on + strand, within EX31_RS09770at 160.093 kb on - strand, within EX31_RS09770at 160.093 kb on - strand, within EX31_RS09770at 160.132 kb on - strand, within EX31_RS09770at 160.323 kb on + strand, within EX31_RS09770at 160.324 kb on - strand, within EX31_RS09770at 160.344 kb on - strand, within EX31_RS09770at 160.367 kb on - strand, within EX31_RS09770

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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157,354 + EX31_RS09760 0.55 -0.0
157,354 + EX31_RS09760 0.55 -1.0
157,354 + EX31_RS09760 0.55 -0.2
157,430 - EX31_RS09760 0.63 -0.0
157,430 - EX31_RS09760 0.63 +0.6
157,466 - EX31_RS09760 0.66 +0.2
157,531 + EX31_RS09760 0.73 +0.2
157,571 + EX31_RS09760 0.77 +0.6
157,814 + -1.0
157,814 + -1.0
157,816 + -0.4
157,822 + +1.2
157,823 - +1.6
157,823 - +0.2
157,826 + -0.4
157,827 - +0.3
157,850 + +1.4
157,959 + -1.8
157,960 - +0.6
157,970 + +0.2
157,971 - +0.8
157,971 - +0.6
158,043 + +1.3
158,070 + -2.2
158,070 + -3.3
158,131 + -1.8
158,238 - -3.3
158,259 + -1.4
158,259 + -1.4
158,260 - -3.6
158,260 - -2.0
158,260 - +0.6
158,423 + EX31_RS09765 0.18 -0.4
158,469 + EX31_RS09765 0.22 -1.2
158,470 - EX31_RS09765 0.22 -3.1
158,473 - EX31_RS09765 0.22 +0.6
158,473 - EX31_RS09765 0.22 -1.0
158,523 + EX31_RS09765 0.26 -1.4
158,531 + EX31_RS09765 0.27 +0.6
158,555 - EX31_RS09765 0.28 -1.4
158,601 - EX31_RS09765 0.32 -1.4
158,601 - EX31_RS09765 0.32 -1.4
158,601 - EX31_RS09765 0.32 -2.0
158,654 + EX31_RS09765 0.36 -2.8
158,733 + EX31_RS09765 0.42 +0.6
158,733 + EX31_RS09765 0.42 -2.9
158,733 + EX31_RS09765 0.42 -1.8
158,778 - EX31_RS09765 0.45 -2.8
158,778 - EX31_RS09765 0.45 -1.8
158,880 - EX31_RS09765 0.53 -2.4
158,907 + EX31_RS09765 0.55 -1.8
158,907 + EX31_RS09765 0.55 -3.8
158,907 + EX31_RS09765 0.55 -2.0
158,907 + EX31_RS09765 0.55 -3.2
158,907 + EX31_RS09765 0.55 -0.4
158,908 - EX31_RS09765 0.55 -0.4
158,908 - EX31_RS09765 0.55 -1.4
158,913 + EX31_RS09765 0.55 -1.4
158,913 + EX31_RS09765 0.55 -2.6
158,913 + EX31_RS09765 0.55 -0.4
158,914 - EX31_RS09765 0.56 -1.0
158,931 + EX31_RS09765 0.57 -0.4
158,931 + EX31_RS09765 0.57 -0.4
159,147 + EX31_RS09765 0.73 -3.2
159,147 + EX31_RS09765 0.73 -1.8
159,147 + EX31_RS09765 0.73 -2.2
159,148 - EX31_RS09765 0.73 -1.8
159,148 - EX31_RS09765 0.73 -2.6
159,148 - EX31_RS09765 0.73 +0.6
159,228 + EX31_RS09765 0.79 -2.6
159,228 + EX31_RS09765 0.79 -2.2
159,228 + EX31_RS09765 0.79 -3.1
159,228 + EX31_RS09765 0.79 -1.8
159,228 + EX31_RS09765 0.79 -1.0
159,229 - EX31_RS09765 0.79 +0.6
159,229 - EX31_RS09765 0.79 -1.0
159,229 - EX31_RS09765 0.79 -1.0
159,229 - EX31_RS09765 0.79 -1.4
159,240 + EX31_RS09765 0.80 -0.4
159,339 + EX31_RS09765 0.88 -2.0
159,340 - EX31_RS09765 0.88 -0.4
159,411 + +0.6
159,511 + -3.0
159,580 + -1.8
159,591 + -0.8
159,591 + -2.9
159,591 + +0.6
159,591 + -1.4
159,591 + -1.2
159,592 - -2.6
159,592 - -2.9
159,592 - -3.0
159,596 - -2.8
159,605 + -3.2
159,638 + -1.0
159,794 + EX31_RS09770 0.14 -2.1
159,795 - EX31_RS09770 0.14 -2.8
159,795 - EX31_RS09770 0.14 -3.0
159,857 + EX31_RS09770 0.18 -2.4
159,860 + EX31_RS09770 0.18 -2.0
159,860 + EX31_RS09770 0.18 -1.0
159,861 - EX31_RS09770 0.19 +0.6
160,054 + EX31_RS09770 0.32 -1.8
160,055 - EX31_RS09770 0.32 -1.0
160,092 + EX31_RS09770 0.34 -2.8
160,092 + EX31_RS09770 0.34 -2.8
160,093 - EX31_RS09770 0.35 -1.4
160,093 - EX31_RS09770 0.35 -2.0
160,132 - EX31_RS09770 0.37 -1.4
160,323 + EX31_RS09770 0.50 -1.2
160,324 - EX31_RS09770 0.50 -1.2
160,344 - EX31_RS09770 0.52 +0.1
160,367 - EX31_RS09770 0.53 -2.2

Or see this region's nucleotide sequence