Strain Fitness in Rahnella sp. WP5 around EX31_RS09745

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS09740 and EX31_RS09745 are separated by 68 nucleotidesEX31_RS09745 and EX31_RS09750 are separated by 181 nucleotides EX31_RS09740: EX31_RS09740 - alpha-xylosidase, at 150,246 to 152,570 _RS09740 EX31_RS09745: EX31_RS09745 - XylR family transcriptional regulator, at 152,639 to 153,826 _RS09745 EX31_RS09750: EX31_RS09750 - sugar ABC transporter permease, at 154,008 to 155,207 _RS09750 Position (kb) 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 151.655 kb on - strand, within EX31_RS09740at 151.655 kb on - strand, within EX31_RS09740at 151.815 kb on + strand, within EX31_RS09740at 151.816 kb on - strand, within EX31_RS09740at 151.896 kb on + strand, within EX31_RS09740at 151.897 kb on - strand, within EX31_RS09740at 151.897 kb on - strand, within EX31_RS09740at 151.897 kb on - strand, within EX31_RS09740at 152.052 kb on + strand, within EX31_RS09740at 152.052 kb on + strand, within EX31_RS09740at 152.067 kb on + strand, within EX31_RS09740at 152.067 kb on + strand, within EX31_RS09740at 152.067 kb on + strand, within EX31_RS09740at 152.068 kb on - strand, within EX31_RS09740at 152.069 kb on + strand, within EX31_RS09740at 152.069 kb on + strand, within EX31_RS09740at 152.069 kb on + strand, within EX31_RS09740at 152.069 kb on + strand, within EX31_RS09740at 152.069 kb on + strand, within EX31_RS09740at 152.069 kb on + strand, within EX31_RS09740at 152.069 kb on + strand, within EX31_RS09740at 152.070 kb on - strand, within EX31_RS09740at 152.070 kb on - strand, within EX31_RS09740at 152.070 kb on - strand, within EX31_RS09740at 152.070 kb on - strand, within EX31_RS09740at 152.070 kb on - strand, within EX31_RS09740at 152.131 kb on - strand, within EX31_RS09740at 152.229 kb on + strand, within EX31_RS09740at 152.229 kb on + strand, within EX31_RS09740at 152.229 kb on + strand, within EX31_RS09740at 152.230 kb on - strand, within EX31_RS09740at 152.230 kb on - strand, within EX31_RS09740at 152.230 kb on - strand, within EX31_RS09740at 152.230 kb on - strand, within EX31_RS09740at 152.230 kb on - strand, within EX31_RS09740at 152.230 kb on - strand, within EX31_RS09740at 152.264 kb on + strand, within EX31_RS09740at 152.284 kb on - strand, within EX31_RS09740at 152.289 kb on + strand, within EX31_RS09740at 152.290 kb on - strand, within EX31_RS09740at 152.411 kb on - strandat 152.414 kb on + strandat 152.414 kb on + strandat 152.414 kb on + strandat 152.414 kb on + strandat 152.414 kb on + strandat 152.415 kb on - strandat 152.560 kb on + strandat 152.568 kb on + strandat 152.568 kb on + strandat 152.569 kb on - strandat 152.573 kb on + strandat 152.574 kb on - strandat 152.591 kb on + strandat 152.591 kb on + strandat 152.591 kb on + strandat 152.591 kb on + strandat 152.591 kb on + strandat 152.591 kb on + strandat 152.591 kb on + strandat 152.592 kb on - strandat 152.592 kb on - strandat 152.715 kb on - strandat 152.727 kb on + strandat 152.728 kb on - strandat 152.782 kb on + strand, within EX31_RS09745at 152.783 kb on - strand, within EX31_RS09745at 152.920 kb on + strand, within EX31_RS09745at 152.921 kb on - strand, within EX31_RS09745at 152.921 kb on - strand, within EX31_RS09745at 152.949 kb on + strand, within EX31_RS09745at 152.950 kb on - strand, within EX31_RS09745at 152.950 kb on - strand, within EX31_RS09745at 152.950 kb on - strand, within EX31_RS09745at 152.950 kb on - strand, within EX31_RS09745at 153.011 kb on + strand, within EX31_RS09745at 153.051 kb on - strand, within EX31_RS09745at 153.119 kb on + strand, within EX31_RS09745at 153.494 kb on - strand, within EX31_RS09745at 153.516 kb on + strand, within EX31_RS09745at 153.517 kb on - strand, within EX31_RS09745at 153.517 kb on - strand, within EX31_RS09745at 153.517 kb on - strand, within EX31_RS09745at 153.532 kb on + strand, within EX31_RS09745at 153.533 kb on - strand, within EX31_RS09745at 153.534 kb on + strand, within EX31_RS09745at 153.534 kb on + strand, within EX31_RS09745at 153.534 kb on + strand, within EX31_RS09745at 153.534 kb on + strand, within EX31_RS09745at 153.534 kb on + strand, within EX31_RS09745at 153.535 kb on - strand, within EX31_RS09745at 153.535 kb on - strand, within EX31_RS09745at 153.535 kb on - strand, within EX31_RS09745at 153.671 kb on - strand, within EX31_RS09745at 153.680 kb on + strand, within EX31_RS09745at 153.680 kb on + strand, within EX31_RS09745at 153.791 kb on - strandat 153.851 kb on + strandat 153.852 kb on - strandat 153.857 kb on - strandat 153.874 kb on + strandat 153.907 kb on - strandat 153.924 kb on + strandat 153.924 kb on + strandat 153.925 kb on - strandat 153.925 kb on - strandat 153.925 kb on - strandat 153.925 kb on - strandat 153.928 kb on + strandat 153.935 kb on - strandat 153.935 kb on - strandat 153.935 kb on - strandat 153.939 kb on + strandat 153.971 kb on - strandat 153.971 kb on - strandat 154.010 kb on - strandat 154.075 kb on + strandat 154.075 kb on + strandat 154.093 kb on - strandat 154.380 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.385 kb on - strand, within EX31_RS09750at 154.388 kb on + strand, within EX31_RS09750at 154.492 kb on + strand, within EX31_RS09750at 154.638 kb on - strand, within EX31_RS09750at 154.663 kb on + strand, within EX31_RS09750at 154.664 kb on - strand, within EX31_RS09750at 154.664 kb on - strand, within EX31_RS09750at 154.664 kb on - strand, within EX31_RS09750at 154.675 kb on - strand, within EX31_RS09750at 154.675 kb on - strand, within EX31_RS09750at 154.675 kb on - strand, within EX31_RS09750at 154.675 kb on - strand, within EX31_RS09750at 154.793 kb on - strand, within EX31_RS09750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
151,655 - EX31_RS09740 0.61 +2.9
151,655 - EX31_RS09740 0.61 +0.6
151,815 + EX31_RS09740 0.67 -0.8
151,816 - EX31_RS09740 0.68 -0.7
151,896 + EX31_RS09740 0.71 -0.8
151,897 - EX31_RS09740 0.71 +0.6
151,897 - EX31_RS09740 0.71 +1.1
151,897 - EX31_RS09740 0.71 +2.0
152,052 + EX31_RS09740 0.78 +0.2
152,052 + EX31_RS09740 0.78 +0.6
152,067 + EX31_RS09740 0.78 +0.8
152,067 + EX31_RS09740 0.78 +1.2
152,067 + EX31_RS09740 0.78 -0.0
152,068 - EX31_RS09740 0.78 +1.2
152,069 + EX31_RS09740 0.78 -0.8
152,069 + EX31_RS09740 0.78 +0.1
152,069 + EX31_RS09740 0.78 -0.0
152,069 + EX31_RS09740 0.78 +0.2
152,069 + EX31_RS09740 0.78 +1.1
152,069 + EX31_RS09740 0.78 +0.6
152,069 + EX31_RS09740 0.78 +0.6
152,070 - EX31_RS09740 0.78 +0.2
152,070 - EX31_RS09740 0.78 +0.6
152,070 - EX31_RS09740 0.78 -0.4
152,070 - EX31_RS09740 0.78 -2.0
152,070 - EX31_RS09740 0.78 -0.4
152,131 - EX31_RS09740 0.81 +0.3
152,229 + EX31_RS09740 0.85 +0.1
152,229 + EX31_RS09740 0.85 +0.6
152,229 + EX31_RS09740 0.85 -2.2
152,230 - EX31_RS09740 0.85 +0.4
152,230 - EX31_RS09740 0.85 +1.6
152,230 - EX31_RS09740 0.85 +1.2
152,230 - EX31_RS09740 0.85 +1.6
152,230 - EX31_RS09740 0.85 -0.4
152,230 - EX31_RS09740 0.85 -1.8
152,264 + EX31_RS09740 0.87 -0.0
152,284 - EX31_RS09740 0.88 +0.2
152,289 + EX31_RS09740 0.88 -0.8
152,290 - EX31_RS09740 0.88 +2.7
152,411 - -0.4
152,414 + -0.4
152,414 + +0.1
152,414 + -1.2
152,414 + -0.6
152,414 + -0.2
152,415 - +0.6
152,560 + -1.4
152,568 + -0.7
152,568 + -0.0
152,569 - +1.2
152,573 + +0.4
152,574 - +0.2
152,591 + +0.6
152,591 + -0.2
152,591 + +3.2
152,591 + -0.0
152,591 + -0.4
152,591 + +0.7
152,591 + -0.4
152,592 - -0.4
152,592 - +0.6
152,715 - -1.8
152,727 + -1.8
152,728 - -1.0
152,782 + EX31_RS09745 0.12 -2.9
152,783 - EX31_RS09745 0.12 -2.0
152,920 + EX31_RS09745 0.24 +0.6
152,921 - EX31_RS09745 0.24 -2.4
152,921 - EX31_RS09745 0.24 -2.2
152,949 + EX31_RS09745 0.26 -1.8
152,950 - EX31_RS09745 0.26 -1.4
152,950 - EX31_RS09745 0.26 -0.4
152,950 - EX31_RS09745 0.26 -3.3
152,950 - EX31_RS09745 0.26 -1.2
153,011 + EX31_RS09745 0.31 -1.8
153,051 - EX31_RS09745 0.35 -0.4
153,119 + EX31_RS09745 0.40 -1.2
153,494 - EX31_RS09745 0.72 -2.4
153,516 + EX31_RS09745 0.74 -3.1
153,517 - EX31_RS09745 0.74 -2.9
153,517 - EX31_RS09745 0.74 -2.8
153,517 - EX31_RS09745 0.74 -2.0
153,532 + EX31_RS09745 0.75 -1.0
153,533 - EX31_RS09745 0.75 -1.4
153,534 + EX31_RS09745 0.75 -1.0
153,534 + EX31_RS09745 0.75 -1.4
153,534 + EX31_RS09745 0.75 -2.0
153,534 + EX31_RS09745 0.75 -0.4
153,534 + EX31_RS09745 0.75 +0.6
153,535 - EX31_RS09745 0.75 -3.2
153,535 - EX31_RS09745 0.75 -1.4
153,535 - EX31_RS09745 0.75 -0.8
153,671 - EX31_RS09745 0.87 -1.2
153,680 + EX31_RS09745 0.88 -0.0
153,680 + EX31_RS09745 0.88 -0.2
153,791 - -1.1
153,851 + -1.0
153,852 - +1.6
153,857 - -0.8
153,874 + -1.0
153,907 - -0.6
153,924 + -2.0
153,924 + -2.0
153,925 - -0.3
153,925 - +1.0
153,925 - +0.6
153,925 - +0.3
153,928 + -2.0
153,935 - +0.1
153,935 - +1.2
153,935 - -0.8
153,939 + +0.6
153,971 - -1.4
153,971 - +0.2
154,010 - +1.6
154,075 + -0.8
154,075 + -1.0
154,093 - +0.7
154,380 - EX31_RS09750 0.31 +0.9
154,385 - EX31_RS09750 0.31 +1.9
154,385 - EX31_RS09750 0.31 +1.0
154,385 - EX31_RS09750 0.31 +0.4
154,385 - EX31_RS09750 0.31 +1.2
154,385 - EX31_RS09750 0.31 +0.6
154,388 + EX31_RS09750 0.32 -1.2
154,492 + EX31_RS09750 0.40 -1.0
154,638 - EX31_RS09750 0.53 -0.7
154,663 + EX31_RS09750 0.55 -2.0
154,664 - EX31_RS09750 0.55 +0.2
154,664 - EX31_RS09750 0.55 +0.4
154,664 - EX31_RS09750 0.55 -0.6
154,675 - EX31_RS09750 0.56 -0.4
154,675 - EX31_RS09750 0.56 +0.8
154,675 - EX31_RS09750 0.56 +2.8
154,675 - EX31_RS09750 0.56 -0.4
154,793 - EX31_RS09750 0.65 -0.3

Or see this region's nucleotide sequence