Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05050 and EX31_RS05055 are separated by 246 nucleotides EX31_RS05055 and EX31_RS05060 are separated by 121 nucleotides EX31_RS05060 and EX31_RS05065 are separated by 105 nucleotides
EX31_RS05050: EX31_RS05050 - gluconate transporter, at 140,838 to 142,154
_RS05050
EX31_RS05055: EX31_RS05055 - gluconokinase, at 142,401 to 142,916
_RS05055
EX31_RS05060: EX31_RS05060 - gluconate operon transcriptional repressor GntR, at 143,038 to 144,033
_RS05060
EX31_RS05065: EX31_RS05065 - LacI family transcriptional regulator, at 144,139 to 145,056
_RS05065
Position (kb) 143
144
145 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 142.043 kb on + strand at 142.044 kb on - strand at 142.044 kb on - strand at 142.088 kb on + strand at 142.088 kb on + strand at 142.088 kb on + strand at 142.088 kb on + strand at 142.088 kb on + strand at 142.089 kb on - strand at 142.089 kb on - strand at 142.089 kb on - strand at 142.089 kb on - strand at 142.094 kb on + strand at 142.095 kb on - strand at 142.095 kb on - strand at 142.095 kb on - strand at 142.106 kb on + strand at 142.106 kb on + strand at 142.106 kb on + strand at 142.106 kb on + strand at 142.106 kb on + strand at 142.107 kb on - strand at 142.107 kb on - strand at 142.110 kb on + strand at 142.110 kb on + strand at 142.110 kb on + strand at 142.110 kb on + strand at 142.110 kb on + strand at 142.111 kb on - strand at 142.111 kb on - strand at 142.111 kb on - strand at 142.111 kb on - strand at 142.111 kb on - strand at 142.111 kb on - strand at 142.111 kb on - strand at 142.111 kb on - strand at 142.138 kb on - strand at 142.138 kb on - strand at 142.138 kb on - strand at 142.142 kb on + strand at 142.142 kb on + strand at 142.142 kb on + strand at 142.142 kb on + strand at 142.142 kb on + strand at 142.143 kb on - strand at 142.143 kb on - strand at 142.146 kb on + strand at 142.146 kb on + strand at 142.146 kb on + strand at 142.147 kb on - strand at 142.147 kb on - strand at 142.147 kb on - strand at 142.147 kb on - strand at 142.147 kb on - strand at 142.147 kb on - strand at 142.147 kb on - strand at 142.147 kb on - strand at 142.154 kb on + strand at 142.155 kb on - strand at 142.246 kb on + strand at 142.269 kb on - strand at 142.295 kb on - strand at 142.295 kb on - strand at 142.295 kb on - strand at 142.347 kb on + strand at 142.347 kb on + strand at 142.348 kb on - strand at 142.348 kb on - strand at 142.348 kb on - strand at 142.348 kb on - strand at 142.348 kb on - strand at 142.350 kb on + strand at 142.350 kb on + strand at 142.350 kb on + strand at 142.350 kb on + strand at 142.350 kb on + strand at 142.351 kb on - strand at 142.351 kb on - strand at 142.351 kb on - strand at 142.360 kb on + strand at 142.360 kb on + strand at 142.360 kb on + strand at 142.361 kb on - strand at 142.396 kb on + strand at 142.396 kb on + strand at 142.396 kb on + strand at 142.396 kb on + strand at 142.396 kb on + strand at 142.397 kb on - strand at 142.397 kb on - strand at 142.397 kb on - strand at 142.400 kb on + strand at 142.400 kb on + strand at 142.400 kb on + strand at 142.400 kb on + strand at 142.400 kb on + strand at 142.400 kb on + strand at 142.401 kb on - strand at 142.401 kb on - strand at 142.401 kb on - strand at 142.401 kb on - strand at 142.401 kb on - strand at 142.401 kb on - strand at 142.445 kb on + strand at 142.445 kb on + strand at 142.606 kb on - strand, within EX31_RS05055 at 142.665 kb on + strand, within EX31_RS05055 at 142.682 kb on + strand, within EX31_RS05055 at 142.682 kb on + strand, within EX31_RS05055 at 142.683 kb on - strand, within EX31_RS05055 at 142.697 kb on + strand, within EX31_RS05055 at 142.697 kb on + strand, within EX31_RS05055 at 142.697 kb on + strand, within EX31_RS05055 at 142.697 kb on + strand, within EX31_RS05055 at 142.698 kb on - strand, within EX31_RS05055 at 142.698 kb on - strand, within EX31_RS05055 at 142.698 kb on - strand, within EX31_RS05055 at 142.710 kb on + strand, within EX31_RS05055 at 142.710 kb on + strand, within EX31_RS05055 at 142.710 kb on + strand, within EX31_RS05055 at 142.710 kb on + strand, within EX31_RS05055 at 142.710 kb on + strand, within EX31_RS05055 at 142.711 kb on - strand, within EX31_RS05055 at 142.711 kb on - strand, within EX31_RS05055 at 142.711 kb on - strand, within EX31_RS05055 at 142.711 kb on - strand, within EX31_RS05055 at 142.711 kb on - strand, within EX31_RS05055 at 142.711 kb on - strand, within EX31_RS05055 at 142.711 kb on - strand, within EX31_RS05055 at 142.711 kb on - strand, within EX31_RS05055 at 142.748 kb on + strand, within EX31_RS05055 at 142.783 kb on + strand, within EX31_RS05055 at 142.851 kb on - strand, within EX31_RS05055 at 142.876 kb on + strand at 142.877 kb on - strand at 142.877 kb on - strand at 142.914 kb on + strand at 142.914 kb on + strand at 143.043 kb on + strand at 143.043 kb on + strand at 143.307 kb on + strand, within EX31_RS05060 at 143.308 kb on - strand, within EX31_RS05060 at 143.347 kb on + strand, within EX31_RS05060 at 143.366 kb on + strand, within EX31_RS05060 at 143.366 kb on + strand, within EX31_RS05060 at 143.367 kb on - strand, within EX31_RS05060 at 143.396 kb on + strand, within EX31_RS05060 at 143.396 kb on + strand, within EX31_RS05060 at 143.397 kb on - strand, within EX31_RS05060 at 143.397 kb on - strand, within EX31_RS05060 at 143.397 kb on - strand, within EX31_RS05060 at 143.397 kb on - strand, within EX31_RS05060 at 143.397 kb on - strand, within EX31_RS05060 at 143.432 kb on + strand, within EX31_RS05060 at 143.480 kb on + strand, within EX31_RS05060 at 143.480 kb on + strand, within EX31_RS05060 at 143.481 kb on - strand, within EX31_RS05060 at 143.481 kb on - strand, within EX31_RS05060 at 143.481 kb on - strand, within EX31_RS05060 at 143.481 kb on - strand, within EX31_RS05060 at 143.481 kb on - strand, within EX31_RS05060 at 143.481 kb on - strand, within EX31_RS05060 at 143.481 kb on - strand, within EX31_RS05060 at 143.635 kb on - strand, within EX31_RS05060 at 143.681 kb on + strand, within EX31_RS05060 at 143.681 kb on + strand, within EX31_RS05060 at 143.681 kb on + strand, within EX31_RS05060 at 143.682 kb on - strand, within EX31_RS05060 at 143.732 kb on + strand, within EX31_RS05060 at 143.888 kb on + strand, within EX31_RS05060 at 143.888 kb on + strand, within EX31_RS05060 at 143.888 kb on + strand, within EX31_RS05060 at 143.889 kb on - strand, within EX31_RS05060 at 143.889 kb on - strand, within EX31_RS05060 at 143.889 kb on - strand, within EX31_RS05060 at 144.033 kb on + strand at 144.033 kb on + strand at 144.086 kb on + strand at 144.137 kb on + strand at 144.138 kb on - strand at 144.282 kb on + strand, within EX31_RS05065 at 144.283 kb on - strand, within EX31_RS05065 at 144.458 kb on + strand, within EX31_RS05065 at 144.572 kb on + strand, within EX31_RS05065 at 144.572 kb on + strand, within EX31_RS05065 at 144.572 kb on + strand, within EX31_RS05065 at 144.572 kb on + strand, within EX31_RS05065 at 144.572 kb on + strand, within EX31_RS05065 at 144.572 kb on + strand, within EX31_RS05065 at 144.573 kb on - strand, within EX31_RS05065 at 144.573 kb on - strand, within EX31_RS05065 at 144.573 kb on - strand, within EX31_RS05065 at 144.611 kb on + strand, within EX31_RS05065 at 144.736 kb on + strand, within EX31_RS05065 at 144.785 kb on + strand, within EX31_RS05065 at 144.785 kb on + strand, within EX31_RS05065 at 144.785 kb on + strand, within EX31_RS05065 at 144.785 kb on + strand, within EX31_RS05065 at 144.785 kb on + strand, within EX31_RS05065 at 144.786 kb on - strand, within EX31_RS05065 at 144.786 kb on - strand, within EX31_RS05065 at 144.873 kb on + strand, within EX31_RS05065 at 144.873 kb on + strand, within EX31_RS05065 at 144.874 kb on - strand, within EX31_RS05065 at 144.921 kb on + strand, within EX31_RS05065 at 144.921 kb on + strand, within EX31_RS05065 at 144.922 kb on - strand, within EX31_RS05065 at 144.924 kb on - strand, within EX31_RS05065 at 144.924 kb on - strand, within EX31_RS05065 at 144.924 kb on - strand, within EX31_RS05065 at 144.924 kb on - strand, within EX31_RS05065
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 142,043 + +1.3 142,044 - -1.3 142,044 - +1.0 142,088 + -0.4 142,088 + -0.1 142,088 + +1.1 142,088 + +0.0 142,088 + -0.2 142,089 - -0.4 142,089 - -0.1 142,089 - +0.6 142,089 - -0.2 142,094 + +2.1 142,095 - +1.1 142,095 - +0.2 142,095 - -0.5 142,106 + +0.5 142,106 + -0.3 142,106 + -1.0 142,106 + +0.8 142,106 + -0.1 142,107 - -0.2 142,107 - -0.1 142,110 + -0.3 142,110 + +0.7 142,110 + +0.1 142,110 + -0.3 142,110 + -0.8 142,111 - +0.4 142,111 - -0.6 142,111 - +0.4 142,111 - +0.3 142,111 - -0.8 142,111 - +0.6 142,111 - +0.4 142,111 - -0.3 142,138 - +0.0 142,138 - -0.8 142,138 - -0.1 142,142 + +1.4 142,142 + +0.8 142,142 + +0.8 142,142 + +0.3 142,142 + -0.3 142,143 - -0.0 142,143 - +0.4 142,146 + -0.4 142,146 + +0.0 142,146 + -2.1 142,147 - -0.3 142,147 - +0.3 142,147 - -0.6 142,147 - +1.8 142,147 - -0.4 142,147 - +1.0 142,147 - +1.0 142,147 - +1.0 142,154 + +0.5 142,155 - +0.2 142,246 + +0.2 142,269 - +0.6 142,295 - +1.0 142,295 - -0.7 142,295 - -0.0 142,347 + +0.9 142,347 + +1.1 142,348 - -0.5 142,348 - +0.3 142,348 - +0.5 142,348 - -1.5 142,348 - +0.1 142,350 + -1.8 142,350 + -0.1 142,350 + +2.0 142,350 + +0.0 142,350 + -0.2 142,351 - -0.8 142,351 - -1.1 142,351 - -0.9 142,360 + +0.4 142,360 + -0.1 142,360 + +0.2 142,361 - +0.6 142,396 + -0.8 142,396 + +0.7 142,396 + +0.2 142,396 + -0.3 142,396 + +0.2 142,397 - -0.0 142,397 - -0.7 142,397 - -0.6 142,400 + -0.3 142,400 + -0.1 142,400 + -2.8 142,400 + -1.0 142,400 + +0.2 142,400 + -1.0 142,401 - -0.7 142,401 - -1.3 142,401 - -0.8 142,401 - -0.3 142,401 - -0.5 142,401 - +0.0 142,445 + -0.9 142,445 + -1.5 142,606 - EX31_RS05055 0.40 -0.8 142,665 + EX31_RS05055 0.51 -2.1 142,682 + EX31_RS05055 0.54 -0.9 142,682 + EX31_RS05055 0.54 -0.2 142,683 - EX31_RS05055 0.55 +0.2 142,697 + EX31_RS05055 0.57 -0.2 142,697 + EX31_RS05055 0.57 -0.9 142,697 + EX31_RS05055 0.57 -0.9 142,697 + EX31_RS05055 0.57 -0.2 142,698 - EX31_RS05055 0.58 -0.9 142,698 - EX31_RS05055 0.58 -0.4 142,698 - EX31_RS05055 0.58 +0.1 142,710 + EX31_RS05055 0.60 -0.2 142,710 + EX31_RS05055 0.60 -1.4 142,710 + EX31_RS05055 0.60 +0.4 142,710 + EX31_RS05055 0.60 +0.1 142,710 + EX31_RS05055 0.60 +0.0 142,711 - EX31_RS05055 0.60 +0.1 142,711 - EX31_RS05055 0.60 -0.8 142,711 - EX31_RS05055 0.60 -1.4 142,711 - EX31_RS05055 0.60 +1.4 142,711 - EX31_RS05055 0.60 -1.7 142,711 - EX31_RS05055 0.60 -1.7 142,711 - EX31_RS05055 0.60 -1.0 142,711 - EX31_RS05055 0.60 -0.5 142,748 + EX31_RS05055 0.67 -1.1 142,783 + EX31_RS05055 0.74 -0.3 142,851 - EX31_RS05055 0.87 -0.1 142,876 + -0.9 142,877 - -0.4 142,877 - +1.4 142,914 + +0.7 142,914 + -0.2 143,043 + -0.2 143,043 + -0.9 143,307 + EX31_RS05060 0.27 -0.8 143,308 - EX31_RS05060 0.27 +1.1 143,347 + EX31_RS05060 0.31 -0.9 143,366 + EX31_RS05060 0.33 -1.9 143,366 + EX31_RS05060 0.33 -0.9 143,367 - EX31_RS05060 0.33 -1.2 143,396 + EX31_RS05060 0.36 -0.8 143,396 + EX31_RS05060 0.36 +0.1 143,397 - EX31_RS05060 0.36 -3.4 143,397 - EX31_RS05060 0.36 -0.6 143,397 - EX31_RS05060 0.36 -1.4 143,397 - EX31_RS05060 0.36 +0.7 143,397 - EX31_RS05060 0.36 -1.3 143,432 + EX31_RS05060 0.40 +0.4 143,480 + EX31_RS05060 0.44 -1.4 143,480 + EX31_RS05060 0.44 -0.4 143,481 - EX31_RS05060 0.44 -0.8 143,481 - EX31_RS05060 0.44 -1.2 143,481 - EX31_RS05060 0.44 -0.8 143,481 - EX31_RS05060 0.44 -0.7 143,481 - EX31_RS05060 0.44 -0.5 143,481 - EX31_RS05060 0.44 -3.6 143,481 - EX31_RS05060 0.44 -1.3 143,635 - EX31_RS05060 0.60 -0.6 143,681 + EX31_RS05060 0.65 -1.9 143,681 + EX31_RS05060 0.65 -1.1 143,681 + EX31_RS05060 0.65 -1.7 143,682 - EX31_RS05060 0.65 -1.3 143,732 + EX31_RS05060 0.70 -0.1 143,888 + EX31_RS05060 0.85 -0.4 143,888 + EX31_RS05060 0.85 -2.1 143,888 + EX31_RS05060 0.85 +0.2 143,889 - EX31_RS05060 0.85 +0.4 143,889 - EX31_RS05060 0.85 -0.5 143,889 - EX31_RS05060 0.85 -0.7 144,033 + -1.3 144,033 + -0.9 144,086 + +0.6 144,137 + -0.1 144,138 - +1.3 144,282 + EX31_RS05065 0.16 +0.2 144,283 - EX31_RS05065 0.16 +3.4 144,458 + EX31_RS05065 0.35 +0.0 144,572 + EX31_RS05065 0.47 +0.8 144,572 + EX31_RS05065 0.47 +0.6 144,572 + EX31_RS05065 0.47 +0.8 144,572 + EX31_RS05065 0.47 -0.2 144,572 + EX31_RS05065 0.47 +0.4 144,572 + EX31_RS05065 0.47 -0.8 144,573 - EX31_RS05065 0.47 +0.3 144,573 - EX31_RS05065 0.47 -1.6 144,573 - EX31_RS05065 0.47 +1.7 144,611 + EX31_RS05065 0.51 +0.5 144,736 + EX31_RS05065 0.65 +1.2 144,785 + EX31_RS05065 0.70 +0.4 144,785 + EX31_RS05065 0.70 +0.4 144,785 + EX31_RS05065 0.70 +0.4 144,785 + EX31_RS05065 0.70 +0.0 144,785 + EX31_RS05065 0.70 -0.8 144,786 - EX31_RS05065 0.70 -1.1 144,786 - EX31_RS05065 0.70 +0.7 144,873 + EX31_RS05065 0.80 -0.3 144,873 + EX31_RS05065 0.80 +0.4 144,874 - EX31_RS05065 0.80 +0.8 144,921 + EX31_RS05065 0.85 -0.2 144,921 + EX31_RS05065 0.85 +0.5 144,922 - EX31_RS05065 0.85 -0.7 144,924 - EX31_RS05065 0.86 +0.0 144,924 - EX31_RS05065 0.86 +0.2 144,924 - EX31_RS05065 0.86 -0.6 144,924 - EX31_RS05065 0.86 -0.8
Or see this region's nucleotide sequence