Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03785 and EX31_RS03790 are separated by 5 nucleotides EX31_RS03790 and EX31_RS03795 are separated by 82 nucleotides EX31_RS03795 and EX31_RS03800 are separated by 269 nucleotides EX31_RS03800 and EX31_RS03805 overlap by 10 nucleotides
EX31_RS03785: EX31_RS03785 - Co2+/Mg2+ efflux protein ApaG, at 265,997 to 266,374
_RS03785
EX31_RS03790: EX31_RS03790 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 266,380 to 267,234
_RS03790
EX31_RS03795: EX31_RS03795 - type 3 dihydrofolate reductase, at 267,317 to 267,802
_RS03795
EX31_RS03800: EX31_RS03800 - threonine/serine exporter, at 268,072 to 268,542
_RS03800
EX31_RS03805: EX31_RS03805 - threonine/serine exporter ThrE family protein, at 268,533 to 269,342
_RS03805
Position (kb) 267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 266.359 kb on + strand at 266.360 kb on - strand at 266.368 kb on - strand at 266.372 kb on + strand at 266.389 kb on + strand at 266.390 kb on - strand at 266.394 kb on + strand at 266.818 kb on - strand, within EX31_RS03790 at 266.822 kb on - strand, within EX31_RS03790 at 266.845 kb on + strand, within EX31_RS03790 at 266.845 kb on + strand, within EX31_RS03790 at 266.846 kb on - strand, within EX31_RS03790 at 267.048 kb on + strand, within EX31_RS03790 at 267.103 kb on + strand, within EX31_RS03790 at 267.104 kb on - strand, within EX31_RS03790 at 267.169 kb on + strand at 267.818 kb on - strand at 267.818 kb on - strand at 267.911 kb on + strand at 267.911 kb on + strand at 267.911 kb on + strand at 267.911 kb on + strand at 267.912 kb on - strand at 267.912 kb on - strand at 267.912 kb on - strand at 267.912 kb on - strand at 267.913 kb on + strand at 267.913 kb on + strand at 267.913 kb on + strand at 267.913 kb on + strand at 267.913 kb on + strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.925 kb on + strand at 267.926 kb on - strand at 267.939 kb on - strand at 267.994 kb on + strand at 267.995 kb on - strand at 267.995 kb on - strand at 268.048 kb on + strand at 268.049 kb on - strand at 268.049 kb on - strand at 268.049 kb on - strand at 268.049 kb on - strand at 268.061 kb on + strand at 268.061 kb on + strand at 268.062 kb on - strand at 268.062 kb on - strand at 268.062 kb on - strand at 268.062 kb on - strand at 268.073 kb on + strand at 268.073 kb on + strand at 268.074 kb on - strand at 268.074 kb on - strand at 268.074 kb on - strand at 268.117 kb on + strand at 268.126 kb on - strand, within EX31_RS03800 at 268.126 kb on - strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.130 kb on - strand, within EX31_RS03800 at 268.181 kb on - strand, within EX31_RS03800 at 268.197 kb on - strand, within EX31_RS03800 at 268.264 kb on + strand, within EX31_RS03800 at 268.265 kb on - strand, within EX31_RS03800 at 268.265 kb on - strand, within EX31_RS03800 at 268.265 kb on - strand, within EX31_RS03800 at 268.265 kb on - strand, within EX31_RS03800 at 268.265 kb on - strand, within EX31_RS03800 at 268.265 kb on - strand, within EX31_RS03800 at 268.266 kb on + strand, within EX31_RS03800 at 268.267 kb on - strand, within EX31_RS03800 at 268.342 kb on + strand, within EX31_RS03800 at 268.342 kb on + strand, within EX31_RS03800 at 268.342 kb on + strand, within EX31_RS03800 at 268.343 kb on - strand, within EX31_RS03800 at 268.343 kb on - strand, within EX31_RS03800 at 268.343 kb on - strand, within EX31_RS03800 at 268.344 kb on + strand, within EX31_RS03800 at 268.344 kb on + strand, within EX31_RS03800 at 268.344 kb on + strand, within EX31_RS03800 at 268.344 kb on + strand, within EX31_RS03800 at 268.344 kb on + strand, within EX31_RS03800 at 268.344 kb on + strand, within EX31_RS03800 at 268.344 kb on + strand, within EX31_RS03800 at 268.344 kb on + strand, within EX31_RS03800 at 268.345 kb on - strand, within EX31_RS03800 at 268.345 kb on - strand, within EX31_RS03800 at 268.375 kb on + strand, within EX31_RS03800 at 268.441 kb on + strand, within EX31_RS03800 at 268.441 kb on + strand, within EX31_RS03800 at 268.441 kb on + strand, within EX31_RS03800 at 268.441 kb on + strand, within EX31_RS03800 at 268.442 kb on - strand, within EX31_RS03800 at 268.442 kb on - strand, within EX31_RS03800 at 268.442 kb on - strand, within EX31_RS03800 at 268.461 kb on + strand, within EX31_RS03800 at 268.461 kb on + strand, within EX31_RS03800 at 268.462 kb on - strand, within EX31_RS03800 at 268.462 kb on - strand, within EX31_RS03800 at 268.462 kb on - strand, within EX31_RS03800 at 268.525 kb on + strand at 268.526 kb on - strand at 268.613 kb on + strand at 268.635 kb on - strand, within EX31_RS03805 at 268.655 kb on + strand, within EX31_RS03805 at 268.670 kb on + strand, within EX31_RS03805
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 266,359 + -0.5 266,360 - -1.9 266,368 - -0.5 266,372 + -0.4 266,389 + -1.2 266,390 - +0.1 266,394 + -2.2 266,818 - EX31_RS03790 0.51 -0.9 266,822 - EX31_RS03790 0.52 -1.5 266,845 + EX31_RS03790 0.54 -3.0 266,845 + EX31_RS03790 0.54 -1.5 266,846 - EX31_RS03790 0.55 -1.5 267,048 + EX31_RS03790 0.78 -0.5 267,103 + EX31_RS03790 0.85 +0.3 267,104 - EX31_RS03790 0.85 -0.9 267,169 + -1.8 267,818 - -0.7 267,818 - -0.9 267,911 + +0.6 267,911 + +0.9 267,911 + -0.3 267,911 + +1.1 267,912 - -0.2 267,912 - -1.1 267,912 - +2.3 267,912 - +2.2 267,913 + +0.8 267,913 + +0.4 267,913 + +0.2 267,913 + +0.1 267,913 + +1.2 267,914 - +0.3 267,914 - -0.7 267,914 - +0.0 267,914 - -0.0 267,914 - +1.2 267,914 - -0.2 267,914 - -0.9 267,914 - -1.8 267,925 + +0.2 267,926 - +0.6 267,939 - -0.2 267,994 + -1.5 267,995 - +0.5 267,995 - -1.0 268,048 + +1.6 268,049 - +0.1 268,049 - -0.3 268,049 - +0.4 268,049 - +1.1 268,061 + -0.6 268,061 + -0.4 268,062 - -0.1 268,062 - -0.5 268,062 - -0.7 268,062 - -0.3 268,073 + +1.5 268,073 + +0.1 268,074 - +0.5 268,074 - +0.2 268,074 - -0.2 268,117 + +3.5 268,126 - EX31_RS03800 0.11 -1.0 268,126 - EX31_RS03800 0.11 +0.5 268,129 + EX31_RS03800 0.12 -0.0 268,129 + EX31_RS03800 0.12 -0.3 268,129 + EX31_RS03800 0.12 +0.9 268,129 + EX31_RS03800 0.12 +0.2 268,129 + EX31_RS03800 0.12 +0.1 268,129 + EX31_RS03800 0.12 +1.1 268,129 + EX31_RS03800 0.12 +0.3 268,129 + EX31_RS03800 0.12 +0.1 268,130 - EX31_RS03800 0.12 -0.5 268,181 - EX31_RS03800 0.23 +0.5 268,197 - EX31_RS03800 0.27 -0.9 268,264 + EX31_RS03800 0.41 +0.3 268,265 - EX31_RS03800 0.41 +0.7 268,265 - EX31_RS03800 0.41 +0.1 268,265 - EX31_RS03800 0.41 -0.1 268,265 - EX31_RS03800 0.41 -0.5 268,265 - EX31_RS03800 0.41 -0.8 268,265 - EX31_RS03800 0.41 +0.2 268,266 + EX31_RS03800 0.41 +1.4 268,267 - EX31_RS03800 0.41 -1.4 268,342 + EX31_RS03800 0.57 +0.3 268,342 + EX31_RS03800 0.57 -0.3 268,342 + EX31_RS03800 0.57 +1.8 268,343 - EX31_RS03800 0.58 +0.6 268,343 - EX31_RS03800 0.58 -0.7 268,343 - EX31_RS03800 0.58 +0.8 268,344 + EX31_RS03800 0.58 +0.3 268,344 + EX31_RS03800 0.58 +0.5 268,344 + EX31_RS03800 0.58 +0.2 268,344 + EX31_RS03800 0.58 -0.7 268,344 + EX31_RS03800 0.58 +0.1 268,344 + EX31_RS03800 0.58 +0.9 268,344 + EX31_RS03800 0.58 +0.5 268,344 + EX31_RS03800 0.58 -1.7 268,345 - EX31_RS03800 0.58 +0.4 268,345 - EX31_RS03800 0.58 +0.5 268,375 + EX31_RS03800 0.64 -2.1 268,441 + EX31_RS03800 0.78 +0.8 268,441 + EX31_RS03800 0.78 +0.2 268,441 + EX31_RS03800 0.78 -0.3 268,441 + EX31_RS03800 0.78 +0.5 268,442 - EX31_RS03800 0.79 +0.1 268,442 - EX31_RS03800 0.79 +0.0 268,442 - EX31_RS03800 0.79 -1.7 268,461 + EX31_RS03800 0.83 +0.1 268,461 + EX31_RS03800 0.83 -0.3 268,462 - EX31_RS03800 0.83 -0.1 268,462 - EX31_RS03800 0.83 +1.1 268,462 - EX31_RS03800 0.83 -0.1 268,525 + -0.1 268,526 - +0.1 268,613 + -1.8 268,635 - EX31_RS03805 0.13 +0.7 268,655 + EX31_RS03805 0.15 -0.1 268,670 + EX31_RS03805 0.17 +1.1
Or see this region's nucleotide sequence