Strain Fitness in Rahnella sp. WP5 around EX31_RS02820

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02815 and EX31_RS02820 are separated by 12 nucleotidesEX31_RS02820 and EX31_RS02825 are separated by 16 nucleotides EX31_RS02815: EX31_RS02815 - MFS transporter, at 35,590 to 36,906 _RS02815 EX31_RS02820: EX31_RS02820 - YhcH/YjgK/YiaL family protein, at 36,919 to 37,572 _RS02820 EX31_RS02825: EX31_RS02825 - dihydrodipicolinate synthase family protein, at 37,589 to 38,518 _RS02825 Position (kb) 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 35.958 kb on + strand, within EX31_RS02815at 35.958 kb on + strand, within EX31_RS02815at 35.959 kb on - strand, within EX31_RS02815at 36.007 kb on - strand, within EX31_RS02815at 36.028 kb on + strand, within EX31_RS02815at 36.029 kb on - strand, within EX31_RS02815at 36.029 kb on - strand, within EX31_RS02815at 36.029 kb on - strand, within EX31_RS02815at 36.029 kb on - strand, within EX31_RS02815at 36.029 kb on - strand, within EX31_RS02815at 36.029 kb on - strand, within EX31_RS02815at 36.105 kb on - strand, within EX31_RS02815at 36.148 kb on - strand, within EX31_RS02815at 36.148 kb on - strand, within EX31_RS02815at 36.148 kb on - strand, within EX31_RS02815at 36.183 kb on + strand, within EX31_RS02815at 36.183 kb on + strand, within EX31_RS02815at 36.183 kb on + strand, within EX31_RS02815at 36.184 kb on - strand, within EX31_RS02815at 36.216 kb on + strand, within EX31_RS02815at 36.316 kb on + strand, within EX31_RS02815at 36.317 kb on - strand, within EX31_RS02815at 36.354 kb on + strand, within EX31_RS02815at 36.355 kb on - strand, within EX31_RS02815at 36.355 kb on - strand, within EX31_RS02815at 36.469 kb on - strand, within EX31_RS02815at 36.469 kb on - strand, within EX31_RS02815at 36.489 kb on + strand, within EX31_RS02815at 36.489 kb on + strand, within EX31_RS02815at 36.490 kb on - strand, within EX31_RS02815at 36.490 kb on - strand, within EX31_RS02815at 36.507 kb on + strand, within EX31_RS02815at 36.528 kb on + strand, within EX31_RS02815at 36.529 kb on - strand, within EX31_RS02815at 36.551 kb on + strand, within EX31_RS02815at 36.551 kb on + strand, within EX31_RS02815at 36.552 kb on - strand, within EX31_RS02815at 36.552 kb on - strand, within EX31_RS02815at 36.552 kb on - strand, within EX31_RS02815at 36.552 kb on - strand, within EX31_RS02815at 36.759 kb on + strand, within EX31_RS02815at 36.765 kb on + strand, within EX31_RS02815at 36.765 kb on + strand, within EX31_RS02815at 36.766 kb on - strand, within EX31_RS02815at 36.766 kb on - strand, within EX31_RS02815at 36.766 kb on - strand, within EX31_RS02815at 36.789 kb on - strandat 36.808 kb on + strandat 36.865 kb on - strandat 36.877 kb on - strandat 36.909 kb on + strandat 36.910 kb on - strandat 36.934 kb on - strandat 36.938 kb on - strandat 36.987 kb on + strand, within EX31_RS02820at 36.987 kb on + strand, within EX31_RS02820at 37.008 kb on + strand, within EX31_RS02820at 37.083 kb on + strand, within EX31_RS02820at 37.338 kb on + strand, within EX31_RS02820at 37.338 kb on + strand, within EX31_RS02820at 37.338 kb on + strand, within EX31_RS02820at 37.339 kb on - strand, within EX31_RS02820at 37.340 kb on + strand, within EX31_RS02820at 37.341 kb on - strand, within EX31_RS02820at 37.341 kb on - strand, within EX31_RS02820at 37.356 kb on + strand, within EX31_RS02820at 37.356 kb on + strand, within EX31_RS02820at 37.408 kb on + strand, within EX31_RS02820at 37.408 kb on + strand, within EX31_RS02820at 37.408 kb on + strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.423 kb on + strand, within EX31_RS02820at 37.435 kb on - strand, within EX31_RS02820at 37.435 kb on - strand, within EX31_RS02820at 37.435 kb on - strand, within EX31_RS02820at 37.439 kb on - strand, within EX31_RS02820at 37.439 kb on - strand, within EX31_RS02820at 37.439 kb on - strand, within EX31_RS02820at 37.472 kb on + strand, within EX31_RS02820at 37.473 kb on - strand, within EX31_RS02820at 37.508 kb on + strandat 37.508 kb on + strandat 37.508 kb on + strandat 37.509 kb on - strandat 37.509 kb on - strandat 37.533 kb on + strandat 37.534 kb on - strandat 37.581 kb on - strandat 37.590 kb on + strandat 37.590 kb on + strandat 37.590 kb on + strandat 37.591 kb on - strandat 37.591 kb on - strandat 37.592 kb on + strandat 37.593 kb on - strandat 37.593 kb on - strandat 37.735 kb on - strand, within EX31_RS02825at 37.735 kb on - strand, within EX31_RS02825at 37.735 kb on - strand, within EX31_RS02825at 37.839 kb on + strand, within EX31_RS02825at 37.840 kb on - strand, within EX31_RS02825at 37.840 kb on - strand, within EX31_RS02825at 37.851 kb on + strand, within EX31_RS02825at 37.851 kb on + strand, within EX31_RS02825at 37.851 kb on + strand, within EX31_RS02825at 37.852 kb on - strand, within EX31_RS02825at 37.852 kb on - strand, within EX31_RS02825at 37.852 kb on - strand, within EX31_RS02825at 37.853 kb on + strand, within EX31_RS02825at 37.853 kb on + strand, within EX31_RS02825at 37.853 kb on + strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.894 kb on + strand, within EX31_RS02825at 37.939 kb on + strand, within EX31_RS02825at 37.939 kb on + strand, within EX31_RS02825at 37.940 kb on - strand, within EX31_RS02825at 37.957 kb on + strand, within EX31_RS02825at 37.957 kb on + strand, within EX31_RS02825at 38.018 kb on + strand, within EX31_RS02825at 38.019 kb on - strand, within EX31_RS02825at 38.019 kb on - strand, within EX31_RS02825at 38.019 kb on - strand, within EX31_RS02825at 38.046 kb on + strand, within EX31_RS02825at 38.046 kb on + strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.141 kb on - strand, within EX31_RS02825at 38.263 kb on + strand, within EX31_RS02825at 38.264 kb on - strand, within EX31_RS02825at 38.264 kb on - strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.403 kb on - strand, within EX31_RS02825at 38.403 kb on - strand, within EX31_RS02825at 38.418 kb on + strand, within EX31_RS02825at 38.419 kb on - strand, within EX31_RS02825at 38.419 kb on - strand, within EX31_RS02825at 38.507 kb on - strandat 38.512 kb on + strandat 38.512 kb on + strandat 38.512 kb on + strandat 38.512 kb on + strandat 38.513 kb on - strandat 38.513 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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35,958 + EX31_RS02815 0.28 -0.2
35,958 + EX31_RS02815 0.28 -0.3
35,959 - EX31_RS02815 0.28 +1.7
36,007 - EX31_RS02815 0.32 -2.1
36,028 + EX31_RS02815 0.33 -1.0
36,029 - EX31_RS02815 0.33 -0.1
36,029 - EX31_RS02815 0.33 +0.6
36,029 - EX31_RS02815 0.33 +0.2
36,029 - EX31_RS02815 0.33 -0.1
36,029 - EX31_RS02815 0.33 +0.3
36,029 - EX31_RS02815 0.33 -1.8
36,105 - EX31_RS02815 0.39 +0.8
36,148 - EX31_RS02815 0.42 +0.4
36,148 - EX31_RS02815 0.42 +0.4
36,148 - EX31_RS02815 0.42 -0.0
36,183 + EX31_RS02815 0.45 +0.9
36,183 + EX31_RS02815 0.45 -0.6
36,183 + EX31_RS02815 0.45 -2.0
36,184 - EX31_RS02815 0.45 -0.0
36,216 + EX31_RS02815 0.48 +0.0
36,316 + EX31_RS02815 0.55 +0.0
36,317 - EX31_RS02815 0.55 +2.1
36,354 + EX31_RS02815 0.58 -0.0
36,355 - EX31_RS02815 0.58 -0.1
36,355 - EX31_RS02815 0.58 -1.1
36,469 - EX31_RS02815 0.67 +2.0
36,469 - EX31_RS02815 0.67 +2.6
36,489 + EX31_RS02815 0.68 -2.8
36,489 + EX31_RS02815 0.68 -1.5
36,490 - EX31_RS02815 0.68 +1.2
36,490 - EX31_RS02815 0.68 +0.4
36,507 + EX31_RS02815 0.70 -0.9
36,528 + EX31_RS02815 0.71 -0.9
36,529 - EX31_RS02815 0.71 +0.4
36,551 + EX31_RS02815 0.73 +2.6
36,551 + EX31_RS02815 0.73 +0.2
36,552 - EX31_RS02815 0.73 -0.6
36,552 - EX31_RS02815 0.73 -0.3
36,552 - EX31_RS02815 0.73 +0.2
36,552 - EX31_RS02815 0.73 +0.6
36,759 + EX31_RS02815 0.89 +0.4
36,765 + EX31_RS02815 0.89 -0.2
36,765 + EX31_RS02815 0.89 +0.7
36,766 - EX31_RS02815 0.89 +1.8
36,766 - EX31_RS02815 0.89 -0.3
36,766 - EX31_RS02815 0.89 -0.1
36,789 - +2.4
36,808 + +1.0
36,865 - +0.9
36,877 - +0.7
36,909 + +0.7
36,910 - +0.0
36,934 - +1.1
36,938 - +0.7
36,987 + EX31_RS02820 0.10 +2.0
36,987 + EX31_RS02820 0.10 -0.8
37,008 + EX31_RS02820 0.14 +2.0
37,083 + EX31_RS02820 0.25 +1.3
37,338 + EX31_RS02820 0.64 -0.8
37,338 + EX31_RS02820 0.64 -1.2
37,338 + EX31_RS02820 0.64 -2.8
37,339 - EX31_RS02820 0.64 +1.0
37,340 + EX31_RS02820 0.64 -1.0
37,341 - EX31_RS02820 0.65 -0.5
37,341 - EX31_RS02820 0.65 +0.7
37,356 + EX31_RS02820 0.67 +0.8
37,356 + EX31_RS02820 0.67 +0.6
37,408 + EX31_RS02820 0.75 -0.4
37,408 + EX31_RS02820 0.75 -0.6
37,408 + EX31_RS02820 0.75 +0.7
37,409 - EX31_RS02820 0.75 +1.4
37,409 - EX31_RS02820 0.75 +0.7
37,409 - EX31_RS02820 0.75 -0.2
37,409 - EX31_RS02820 0.75 +0.0
37,409 - EX31_RS02820 0.75 +0.9
37,409 - EX31_RS02820 0.75 -0.6
37,423 + EX31_RS02820 0.77 +1.5
37,435 - EX31_RS02820 0.79 +1.3
37,435 - EX31_RS02820 0.79 +1.3
37,435 - EX31_RS02820 0.79 -0.3
37,439 - EX31_RS02820 0.80 +0.8
37,439 - EX31_RS02820 0.80 -0.1
37,439 - EX31_RS02820 0.80 +0.4
37,472 + EX31_RS02820 0.85 +0.5
37,473 - EX31_RS02820 0.85 +0.6
37,508 + -2.1
37,508 + +0.9
37,508 + +1.0
37,509 - +0.8
37,509 - +0.0
37,533 + +2.6
37,534 - +2.2
37,581 - +1.0
37,590 + -0.4
37,590 + +0.0
37,590 + +0.0
37,591 - +0.0
37,591 - +0.6
37,592 + -2.3
37,593 - -1.1
37,593 - +0.2
37,735 - EX31_RS02825 0.16 +0.0
37,735 - EX31_RS02825 0.16 -0.2
37,735 - EX31_RS02825 0.16 +0.1
37,839 + EX31_RS02825 0.27 +0.3
37,840 - EX31_RS02825 0.27 +0.0
37,840 - EX31_RS02825 0.27 +0.8
37,851 + EX31_RS02825 0.28 -1.6
37,851 + EX31_RS02825 0.28 -1.3
37,851 + EX31_RS02825 0.28 +0.2
37,852 - EX31_RS02825 0.28 -0.1
37,852 - EX31_RS02825 0.28 -0.1
37,852 - EX31_RS02825 0.28 +2.6
37,853 + EX31_RS02825 0.28 -0.6
37,853 + EX31_RS02825 0.28 -0.7
37,853 + EX31_RS02825 0.28 +1.0
37,854 - EX31_RS02825 0.28 +0.2
37,854 - EX31_RS02825 0.28 -0.7
37,854 - EX31_RS02825 0.28 +0.1
37,854 - EX31_RS02825 0.28 +0.9
37,894 + EX31_RS02825 0.33 -0.8
37,939 + EX31_RS02825 0.38 +0.4
37,939 + EX31_RS02825 0.38 +0.0
37,940 - EX31_RS02825 0.38 -2.1
37,957 + EX31_RS02825 0.40 +0.5
37,957 + EX31_RS02825 0.40 +1.8
38,018 + EX31_RS02825 0.46 -1.3
38,019 - EX31_RS02825 0.46 +0.0
38,019 - EX31_RS02825 0.46 +0.8
38,019 - EX31_RS02825 0.46 +0.3
38,046 + EX31_RS02825 0.49 +1.8
38,046 + EX31_RS02825 0.49 +0.4
38,047 - EX31_RS02825 0.49 -1.4
38,047 - EX31_RS02825 0.49 +0.4
38,047 - EX31_RS02825 0.49 -0.6
38,047 - EX31_RS02825 0.49 -0.3
38,097 + EX31_RS02825 0.55 +0.2
38,097 + EX31_RS02825 0.55 +0.1
38,097 + EX31_RS02825 0.55 +0.8
38,097 + EX31_RS02825 0.55 -0.3
38,097 + EX31_RS02825 0.55 +1.0
38,097 + EX31_RS02825 0.55 +1.0
38,097 + EX31_RS02825 0.55 -1.5
38,097 + EX31_RS02825 0.55 +0.7
38,098 - EX31_RS02825 0.55 -2.1
38,098 - EX31_RS02825 0.55 -1.1
38,098 - EX31_RS02825 0.55 -0.4
38,098 - EX31_RS02825 0.55 +3.8
38,098 - EX31_RS02825 0.55 -1.3
38,098 - EX31_RS02825 0.55 -2.6
38,098 - EX31_RS02825 0.55 -0.3
38,098 - EX31_RS02825 0.55 -0.3
38,098 - EX31_RS02825 0.55 -0.9
38,098 - EX31_RS02825 0.55 +1.4
38,099 + EX31_RS02825 0.55 +0.0
38,099 + EX31_RS02825 0.55 +1.9
38,099 + EX31_RS02825 0.55 +0.0
38,099 + EX31_RS02825 0.55 -0.3
38,099 + EX31_RS02825 0.55 +2.0
38,099 + EX31_RS02825 0.55 +0.7
38,099 + EX31_RS02825 0.55 -0.9
38,099 + EX31_RS02825 0.55 -0.6
38,099 + EX31_RS02825 0.55 +0.7
38,099 + EX31_RS02825 0.55 +1.2
38,099 + EX31_RS02825 0.55 -0.7
38,100 - EX31_RS02825 0.55 -0.4
38,100 - EX31_RS02825 0.55 +1.0
38,100 - EX31_RS02825 0.55 +0.4
38,100 - EX31_RS02825 0.55 +0.8
38,100 - EX31_RS02825 0.55 +1.6
38,141 - EX31_RS02825 0.59 -0.2
38,263 + EX31_RS02825 0.72 -1.1
38,264 - EX31_RS02825 0.73 +1.0
38,264 - EX31_RS02825 0.73 +1.4
38,402 + EX31_RS02825 0.87 -0.2
38,402 + EX31_RS02825 0.87 +0.0
38,402 + EX31_RS02825 0.87 +0.5
38,402 + EX31_RS02825 0.87 +1.4
38,402 + EX31_RS02825 0.87 +0.0
38,402 + EX31_RS02825 0.87 +1.6
38,402 + EX31_RS02825 0.87 +0.0
38,402 + EX31_RS02825 0.87 -0.7
38,403 - EX31_RS02825 0.88 -0.2
38,403 - EX31_RS02825 0.88 +0.4
38,418 + EX31_RS02825 0.89 +1.3
38,419 - EX31_RS02825 0.89 +1.4
38,419 - EX31_RS02825 0.89 -1.6
38,507 - -0.5
38,512 + -0.6
38,512 + +1.9
38,512 + +0.6
38,512 + +1.8
38,513 - +0.2
38,513 - -0.8

Or see this region's nucleotide sequence