Strain Fitness in Rahnella sp. WP5 around EX31_RS01215

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01210 and EX31_RS01215 are separated by 37 nucleotidesEX31_RS01215 and EX31_RS01220 are separated by 262 nucleotides EX31_RS01210: EX31_RS01210 - TonB-dependent siderophore receptor, at 267,692 to 269,821 _RS01210 EX31_RS01215: EX31_RS01215 - ABC transporter substrate-binding protein, at 269,859 to 270,950 _RS01215 EX31_RS01220: EX31_RS01220 - peptide MFS transporter, at 271,213 to 272,766 _RS01220 Position (kb) 269 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 268.874 kb on - strand, within EX31_RS01210at 268.887 kb on - strand, within EX31_RS01210at 269.040 kb on - strand, within EX31_RS01210at 269.156 kb on + strand, within EX31_RS01210at 269.157 kb on - strand, within EX31_RS01210at 269.157 kb on - strand, within EX31_RS01210at 269.196 kb on + strand, within EX31_RS01210at 269.196 kb on + strand, within EX31_RS01210at 269.196 kb on + strand, within EX31_RS01210at 269.197 kb on - strand, within EX31_RS01210at 269.197 kb on - strand, within EX31_RS01210at 269.214 kb on + strand, within EX31_RS01210at 269.214 kb on + strand, within EX31_RS01210at 269.214 kb on + strand, within EX31_RS01210at 269.254 kb on + strand, within EX31_RS01210at 269.254 kb on + strand, within EX31_RS01210at 269.356 kb on + strand, within EX31_RS01210at 269.429 kb on + strand, within EX31_RS01210at 269.429 kb on + strand, within EX31_RS01210at 269.429 kb on + strand, within EX31_RS01210at 269.430 kb on - strand, within EX31_RS01210at 269.435 kb on + strand, within EX31_RS01210at 269.435 kb on + strand, within EX31_RS01210at 269.436 kb on - strand, within EX31_RS01210at 269.436 kb on - strand, within EX31_RS01210at 269.436 kb on - strand, within EX31_RS01210at 269.436 kb on - strand, within EX31_RS01210at 269.526 kb on - strand, within EX31_RS01210at 269.526 kb on - strand, within EX31_RS01210at 269.536 kb on + strand, within EX31_RS01210at 269.591 kb on + strand, within EX31_RS01210at 269.634 kb on + strandat 269.642 kb on + strandat 269.642 kb on + strandat 269.642 kb on + strandat 269.643 kb on - strandat 269.728 kb on + strandat 269.729 kb on - strandat 269.738 kb on + strandat 269.739 kb on - strandat 269.739 kb on - strandat 269.741 kb on + strandat 269.794 kb on + strandat 269.795 kb on - strandat 269.795 kb on - strandat 269.850 kb on + strandat 269.850 kb on + strandat 269.859 kb on - strandat 269.873 kb on + strandat 269.873 kb on + strandat 269.873 kb on + strandat 269.874 kb on - strandat 269.874 kb on - strandat 269.963 kb on + strandat 269.963 kb on + strandat 269.964 kb on - strandat 269.964 kb on - strandat 270.063 kb on + strand, within EX31_RS01215at 270.064 kb on - strand, within EX31_RS01215at 270.064 kb on - strand, within EX31_RS01215at 270.064 kb on - strand, within EX31_RS01215at 270.107 kb on + strand, within EX31_RS01215at 270.107 kb on + strand, within EX31_RS01215at 270.108 kb on - strand, within EX31_RS01215at 270.108 kb on - strand, within EX31_RS01215at 270.109 kb on + strand, within EX31_RS01215at 270.110 kb on - strand, within EX31_RS01215at 270.110 kb on - strand, within EX31_RS01215at 270.110 kb on - strand, within EX31_RS01215at 270.150 kb on - strand, within EX31_RS01215at 270.166 kb on + strand, within EX31_RS01215at 270.166 kb on + strand, within EX31_RS01215at 270.237 kb on - strand, within EX31_RS01215at 270.368 kb on + strand, within EX31_RS01215at 270.369 kb on - strand, within EX31_RS01215at 270.378 kb on + strand, within EX31_RS01215at 270.389 kb on + strand, within EX31_RS01215at 270.389 kb on + strand, within EX31_RS01215at 270.390 kb on - strand, within EX31_RS01215at 270.390 kb on - strand, within EX31_RS01215at 270.390 kb on - strand, within EX31_RS01215at 270.454 kb on + strand, within EX31_RS01215at 270.454 kb on + strand, within EX31_RS01215at 270.454 kb on + strand, within EX31_RS01215at 270.455 kb on - strand, within EX31_RS01215at 270.455 kb on - strand, within EX31_RS01215at 270.539 kb on + strand, within EX31_RS01215at 270.540 kb on - strand, within EX31_RS01215at 270.615 kb on + strand, within EX31_RS01215at 270.677 kb on - strand, within EX31_RS01215at 270.900 kb on + strandat 270.917 kb on + strandat 270.927 kb on + strandat 270.927 kb on + strandat 270.928 kb on - strandat 270.973 kb on - strandat 271.033 kb on + strandat 271.058 kb on - strandat 271.058 kb on - strandat 271.122 kb on + strandat 271.140 kb on + strandat 271.187 kb on + strandat 271.212 kb on + strandat 271.213 kb on - strandat 271.231 kb on - strandat 271.361 kb on - strandat 271.361 kb on - strandat 271.401 kb on + strand, within EX31_RS01220at 271.401 kb on + strand, within EX31_RS01220at 271.401 kb on + strand, within EX31_RS01220at 271.410 kb on + strand, within EX31_RS01220at 271.411 kb on - strand, within EX31_RS01220at 271.412 kb on + strand, within EX31_RS01220at 271.412 kb on + strand, within EX31_RS01220at 271.412 kb on + strand, within EX31_RS01220at 271.412 kb on + strand, within EX31_RS01220at 271.413 kb on - strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.426 kb on - strand, within EX31_RS01220at 271.426 kb on - strand, within EX31_RS01220at 271.426 kb on - strand, within EX31_RS01220at 271.426 kb on - strand, within EX31_RS01220at 271.429 kb on + strand, within EX31_RS01220at 271.429 kb on + strand, within EX31_RS01220at 271.429 kb on + strand, within EX31_RS01220at 271.429 kb on + strand, within EX31_RS01220at 271.430 kb on - strand, within EX31_RS01220at 271.430 kb on - strand, within EX31_RS01220at 271.430 kb on - strand, within EX31_RS01220at 271.430 kb on - strand, within EX31_RS01220at 271.464 kb on + strand, within EX31_RS01220at 271.465 kb on - strand, within EX31_RS01220at 271.465 kb on - strand, within EX31_RS01220at 271.584 kb on + strand, within EX31_RS01220at 271.585 kb on - strand, within EX31_RS01220at 271.644 kb on + strand, within EX31_RS01220at 271.687 kb on + strand, within EX31_RS01220at 271.687 kb on + strand, within EX31_RS01220at 271.688 kb on - strand, within EX31_RS01220at 271.699 kb on - strand, within EX31_RS01220at 271.789 kb on - strand, within EX31_RS01220at 271.806 kb on + strand, within EX31_RS01220at 271.806 kb on + strand, within EX31_RS01220at 271.843 kb on + strand, within EX31_RS01220at 271.890 kb on + strand, within EX31_RS01220

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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268,874 - EX31_RS01210 0.55 -1.0
268,887 - EX31_RS01210 0.56 +0.4
269,040 - EX31_RS01210 0.63 +0.3
269,156 + EX31_RS01210 0.69 -0.2
269,157 - EX31_RS01210 0.69 +1.0
269,157 - EX31_RS01210 0.69 -1.4
269,196 + EX31_RS01210 0.71 +1.8
269,196 + EX31_RS01210 0.71 +0.8
269,196 + EX31_RS01210 0.71 -0.4
269,197 - EX31_RS01210 0.71 +0.4
269,197 - EX31_RS01210 0.71 +0.5
269,214 + EX31_RS01210 0.71 -1.2
269,214 + EX31_RS01210 0.71 +0.6
269,214 + EX31_RS01210 0.71 -0.4
269,254 + EX31_RS01210 0.73 -0.7
269,254 + EX31_RS01210 0.73 -1.8
269,356 + EX31_RS01210 0.78 +2.1
269,429 + EX31_RS01210 0.82 +0.4
269,429 + EX31_RS01210 0.82 +2.0
269,429 + EX31_RS01210 0.82 -0.2
269,430 - EX31_RS01210 0.82 +1.8
269,435 + EX31_RS01210 0.82 +0.5
269,435 + EX31_RS01210 0.82 -0.2
269,436 - EX31_RS01210 0.82 +0.1
269,436 - EX31_RS01210 0.82 -0.8
269,436 - EX31_RS01210 0.82 +1.4
269,436 - EX31_RS01210 0.82 -0.8
269,526 - EX31_RS01210 0.86 +0.1
269,526 - EX31_RS01210 0.86 +1.1
269,536 + EX31_RS01210 0.87 -1.2
269,591 + EX31_RS01210 0.89 -1.5
269,634 + +0.1
269,642 + -1.8
269,642 + -0.2
269,642 + +0.4
269,643 - -0.6
269,728 + -2.2
269,729 - +1.0
269,738 + +0.3
269,739 - -2.0
269,739 - +0.3
269,741 + +0.8
269,794 + -0.4
269,795 - -0.6
269,795 - +0.8
269,850 + +0.5
269,850 + +0.8
269,859 - +1.8
269,873 + -2.8
269,873 + +0.8
269,873 + -0.3
269,874 - -2.9
269,874 - -0.3
269,963 + +0.2
269,963 + +1.1
269,964 - -0.2
269,964 - -0.2
270,063 + EX31_RS01215 0.19 -1.2
270,064 - EX31_RS01215 0.19 +0.1
270,064 - EX31_RS01215 0.19 -0.2
270,064 - EX31_RS01215 0.19 -2.0
270,107 + EX31_RS01215 0.23 -0.2
270,107 + EX31_RS01215 0.23 +1.1
270,108 - EX31_RS01215 0.23 -2.2
270,108 - EX31_RS01215 0.23 -0.0
270,109 + EX31_RS01215 0.23 +0.8
270,110 - EX31_RS01215 0.23 -0.4
270,110 - EX31_RS01215 0.23 +1.2
270,110 - EX31_RS01215 0.23 +0.2
270,150 - EX31_RS01215 0.27 +0.1
270,166 + EX31_RS01215 0.28 -1.3
270,166 + EX31_RS01215 0.28 -0.4
270,237 - EX31_RS01215 0.35 +0.2
270,368 + EX31_RS01215 0.47 +0.2
270,369 - EX31_RS01215 0.47 -0.2
270,378 + EX31_RS01215 0.48 -0.2
270,389 + EX31_RS01215 0.49 +0.8
270,389 + EX31_RS01215 0.49 -1.3
270,390 - EX31_RS01215 0.49 +0.5
270,390 - EX31_RS01215 0.49 -0.8
270,390 - EX31_RS01215 0.49 +2.0
270,454 + EX31_RS01215 0.54 -0.6
270,454 + EX31_RS01215 0.54 +0.1
270,454 + EX31_RS01215 0.54 -0.8
270,455 - EX31_RS01215 0.55 +1.1
270,455 - EX31_RS01215 0.55 -1.8
270,539 + EX31_RS01215 0.62 -1.6
270,540 - EX31_RS01215 0.62 +0.8
270,615 + EX31_RS01215 0.69 -0.6
270,677 - EX31_RS01215 0.75 +0.8
270,900 + +0.2
270,917 + +0.8
270,927 + -1.5
270,927 + -0.8
270,928 - +0.8
270,973 - +0.2
271,033 + -1.2
271,058 - +0.8
271,058 - +1.8
271,122 + -0.5
271,140 + +1.8
271,187 + +0.1
271,212 + +0.4
271,213 - +0.2
271,231 - -0.2
271,361 - +0.8
271,361 - +2.9
271,401 + EX31_RS01220 0.12 -1.8
271,401 + EX31_RS01220 0.12 +0.8
271,401 + EX31_RS01220 0.12 +0.6
271,410 + EX31_RS01220 0.13 +3.0
271,411 - EX31_RS01220 0.13 +0.2
271,412 + EX31_RS01220 0.13 -2.6
271,412 + EX31_RS01220 0.13 -0.5
271,412 + EX31_RS01220 0.13 -0.9
271,412 + EX31_RS01220 0.13 +0.6
271,413 - EX31_RS01220 0.13 -2.6
271,425 + EX31_RS01220 0.14 +0.2
271,425 + EX31_RS01220 0.14 -0.6
271,425 + EX31_RS01220 0.14 +0.8
271,425 + EX31_RS01220 0.14 +1.2
271,425 + EX31_RS01220 0.14 -0.4
271,425 + EX31_RS01220 0.14 +1.4
271,426 - EX31_RS01220 0.14 -0.5
271,426 - EX31_RS01220 0.14 -0.5
271,426 - EX31_RS01220 0.14 +1.4
271,426 - EX31_RS01220 0.14 -0.2
271,429 + EX31_RS01220 0.14 +0.6
271,429 + EX31_RS01220 0.14 +1.0
271,429 + EX31_RS01220 0.14 +1.8
271,429 + EX31_RS01220 0.14 +0.1
271,430 - EX31_RS01220 0.14 +1.8
271,430 - EX31_RS01220 0.14 -1.8
271,430 - EX31_RS01220 0.14 +2.0
271,430 - EX31_RS01220 0.14 -0.8
271,464 + EX31_RS01220 0.16 -0.4
271,465 - EX31_RS01220 0.16 +0.8
271,465 - EX31_RS01220 0.16 -1.4
271,584 + EX31_RS01220 0.24 -1.6
271,585 - EX31_RS01220 0.24 -0.2
271,644 + EX31_RS01220 0.28 -0.4
271,687 + EX31_RS01220 0.31 +1.5
271,687 + EX31_RS01220 0.31 +0.6
271,688 - EX31_RS01220 0.31 -0.2
271,699 - EX31_RS01220 0.31 -1.2
271,789 - EX31_RS01220 0.37 -0.8
271,806 + EX31_RS01220 0.38 +2.6
271,806 + EX31_RS01220 0.38 -0.2
271,843 + EX31_RS01220 0.41 -0.2
271,890 + EX31_RS01220 0.44 -0.5

Or see this region's nucleotide sequence