Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02440 and CA265_RS02445 are separated by 5 nucleotides CA265_RS02445 and CA265_RS02450 are separated by 81 nucleotides CA265_RS02450 and CA265_RS02455 are separated by 80 nucleotides
CA265_RS02440: CA265_RS02440 - TldD protein, at 602,450 to 604,087
_RS02440
CA265_RS02445: CA265_RS02445 - peptidase C69, at 604,093 to 605,433
_RS02445
CA265_RS02450: CA265_RS02450 - hypothetical protein, at 605,515 to 606,303
_RS02450
CA265_RS02455: CA265_RS02455 - Fe-S oxidoreductase, at 606,384 to 607,679
_RS02455
Position (kb) 604
605
606 Strain fitness (log2 ratio) -2
-1
0
1 at 603.115 kb on - strand, within CA265_RS02440 at 603.177 kb on - strand, within CA265_RS02440 at 603.183 kb on - strand, within CA265_RS02440 at 603.210 kb on + strand, within CA265_RS02440 at 603.265 kb on + strand, within CA265_RS02440 at 603.265 kb on + strand, within CA265_RS02440 at 603.266 kb on - strand, within CA265_RS02440 at 603.266 kb on - strand, within CA265_RS02440 at 603.286 kb on - strand, within CA265_RS02440 at 603.327 kb on - strand, within CA265_RS02440 at 603.354 kb on + strand, within CA265_RS02440 at 603.355 kb on - strand, within CA265_RS02440 at 603.360 kb on + strand, within CA265_RS02440 at 603.425 kb on + strand, within CA265_RS02440 at 603.450 kb on + strand, within CA265_RS02440 at 603.480 kb on - strand, within CA265_RS02440 at 603.499 kb on + strand, within CA265_RS02440 at 603.522 kb on + strand, within CA265_RS02440 at 603.522 kb on + strand, within CA265_RS02440 at 603.531 kb on + strand, within CA265_RS02440 at 603.635 kb on - strand, within CA265_RS02440 at 603.635 kb on - strand, within CA265_RS02440 at 603.645 kb on + strand, within CA265_RS02440 at 603.686 kb on - strand, within CA265_RS02440 at 603.782 kb on + strand, within CA265_RS02440 at 603.782 kb on + strand, within CA265_RS02440 at 603.783 kb on - strand, within CA265_RS02440 at 603.824 kb on + strand, within CA265_RS02440 at 603.852 kb on - strand at 603.883 kb on + strand, within CA265_RS02440 at 603.903 kb on - strand, within CA265_RS02440 at 604.011 kb on + strand at 604.012 kb on - strand at 604.012 kb on - strand at 604.012 kb on - strand at 604.020 kb on + strand at 604.057 kb on + strand at 604.058 kb on - strand at 604.063 kb on + strand at 604.137 kb on + strand at 604.142 kb on + strand at 604.143 kb on - strand at 604.143 kb on - strand at 604.150 kb on + strand at 604.176 kb on - strand at 604.305 kb on - strand, within CA265_RS02445 at 604.414 kb on + strand, within CA265_RS02445 at 604.431 kb on + strand, within CA265_RS02445 at 604.516 kb on - strand, within CA265_RS02445 at 604.583 kb on + strand, within CA265_RS02445 at 604.584 kb on - strand, within CA265_RS02445 at 604.597 kb on - strand, within CA265_RS02445 at 604.597 kb on - strand, within CA265_RS02445 at 604.597 kb on - strand, within CA265_RS02445 at 604.618 kb on - strand, within CA265_RS02445 at 604.684 kb on - strand, within CA265_RS02445 at 604.714 kb on - strand, within CA265_RS02445 at 604.714 kb on - strand, within CA265_RS02445 at 604.714 kb on - strand, within CA265_RS02445 at 604.715 kb on + strand, within CA265_RS02445 at 604.715 kb on + strand, within CA265_RS02445 at 604.715 kb on + strand, within CA265_RS02445 at 604.773 kb on + strand, within CA265_RS02445 at 604.774 kb on - strand, within CA265_RS02445 at 604.780 kb on - strand, within CA265_RS02445 at 604.785 kb on - strand, within CA265_RS02445 at 604.966 kb on - strand, within CA265_RS02445 at 604.966 kb on - strand, within CA265_RS02445 at 605.021 kb on + strand, within CA265_RS02445 at 605.156 kb on + strand, within CA265_RS02445 at 605.156 kb on + strand, within CA265_RS02445 at 605.157 kb on - strand, within CA265_RS02445 at 605.157 kb on - strand, within CA265_RS02445 at 605.177 kb on - strand, within CA265_RS02445 at 605.190 kb on - strand, within CA265_RS02445 at 605.190 kb on - strand, within CA265_RS02445 at 605.259 kb on + strand, within CA265_RS02445 at 605.260 kb on - strand, within CA265_RS02445 at 605.302 kb on - strand at 605.348 kb on + strand at 605.372 kb on - strand at 605.442 kb on + strand at 605.454 kb on + strand at 605.455 kb on - strand at 606.310 kb on - strand at 606.317 kb on - strand at 606.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 603,115 - CA265_RS02440 0.41 +0.3 603,177 - CA265_RS02440 0.44 +0.1 603,183 - CA265_RS02440 0.45 -1.4 603,210 + CA265_RS02440 0.46 +0.2 603,265 + CA265_RS02440 0.50 +0.1 603,265 + CA265_RS02440 0.50 +0.1 603,266 - CA265_RS02440 0.50 -0.2 603,266 - CA265_RS02440 0.50 +0.5 603,286 - CA265_RS02440 0.51 +0.5 603,327 - CA265_RS02440 0.54 -0.5 603,354 + CA265_RS02440 0.55 +0.7 603,355 - CA265_RS02440 0.55 -0.3 603,360 + CA265_RS02440 0.56 -0.4 603,425 + CA265_RS02440 0.60 +1.5 603,450 + CA265_RS02440 0.61 -1.3 603,480 - CA265_RS02440 0.63 -0.0 603,499 + CA265_RS02440 0.64 -2.7 603,522 + CA265_RS02440 0.65 +1.5 603,522 + CA265_RS02440 0.65 +0.0 603,531 + CA265_RS02440 0.66 -0.4 603,635 - CA265_RS02440 0.72 -0.9 603,635 - CA265_RS02440 0.72 +0.2 603,645 + CA265_RS02440 0.73 -0.0 603,686 - CA265_RS02440 0.75 +0.5 603,782 + CA265_RS02440 0.81 +0.5 603,782 + CA265_RS02440 0.81 +0.7 603,783 - CA265_RS02440 0.81 +0.1 603,824 + CA265_RS02440 0.84 +0.0 603,852 - -1.1 603,883 + CA265_RS02440 0.87 -0.5 603,903 - CA265_RS02440 0.89 +0.1 604,011 + -0.5 604,012 - -0.1 604,012 - +0.2 604,012 - +0.1 604,020 + +1.2 604,057 + +0.9 604,058 - +0.3 604,063 + -1.7 604,137 + -0.1 604,142 + -0.8 604,143 - +0.0 604,143 - -0.0 604,150 + +0.8 604,176 - +0.3 604,305 - CA265_RS02445 0.16 -0.7 604,414 + CA265_RS02445 0.24 +0.9 604,431 + CA265_RS02445 0.25 +0.7 604,516 - CA265_RS02445 0.32 +0.2 604,583 + CA265_RS02445 0.37 -0.6 604,584 - CA265_RS02445 0.37 +0.2 604,597 - CA265_RS02445 0.38 +0.5 604,597 - CA265_RS02445 0.38 +0.1 604,597 - CA265_RS02445 0.38 +0.5 604,618 - CA265_RS02445 0.39 -0.1 604,684 - CA265_RS02445 0.44 -0.1 604,714 - CA265_RS02445 0.46 -0.4 604,714 - CA265_RS02445 0.46 +0.2 604,714 - CA265_RS02445 0.46 +0.6 604,715 + CA265_RS02445 0.46 +0.2 604,715 + CA265_RS02445 0.46 +0.2 604,715 + CA265_RS02445 0.46 -0.4 604,773 + CA265_RS02445 0.51 -0.6 604,774 - CA265_RS02445 0.51 +0.2 604,780 - CA265_RS02445 0.51 +0.6 604,785 - CA265_RS02445 0.52 -0.9 604,966 - CA265_RS02445 0.65 +0.5 604,966 - CA265_RS02445 0.65 -0.5 605,021 + CA265_RS02445 0.69 -0.0 605,156 + CA265_RS02445 0.79 +0.4 605,156 + CA265_RS02445 0.79 +0.1 605,157 - CA265_RS02445 0.79 -0.0 605,157 - CA265_RS02445 0.79 -0.4 605,177 - CA265_RS02445 0.81 -0.8 605,190 - CA265_RS02445 0.82 +1.1 605,190 - CA265_RS02445 0.82 +0.1 605,259 + CA265_RS02445 0.87 +0.4 605,260 - CA265_RS02445 0.87 -0.4 605,302 - -0.3 605,348 + -0.1 605,372 - +0.1 605,442 + -0.9 605,454 + -0.4 605,455 - -0.4 606,310 - +0.0 606,317 - -0.4 606,330 - -1.1
Or see this region's nucleotide sequence