Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18980

Experiment: CDM1 without LipoicAcid

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without LipoicAcid
2,035,303	+				-0.3
2,035,311	-				+0.2
2,035,384	-				-1.0
2,035,416	-				-0.3
2,035,464	+				-0.5
2,035,481	+				+0.4
2,035,492	+				-0.0
2,035,494	-				+0.5
2,035,519	-				+0.1
2,035,521	+				-1.8
2,035,524	-				-0.1
2,035,529	-				+0.4
2,035,529	-				-0.2
2,035,535	+				-1.0
2,035,543	+				-1.2
2,035,545	+				-0.7
2,035,545	+				-0.5
2,035,551	-				+1.1
2,035,551	-				+0.3
2,035,553	-				+1.5
2,035,553	-				-0.7
2,035,553	-				+0.3
2,035,553	-				-0.4
2,035,553	-				+0.1
2,035,580	-				+0.1
2,035,598	+				-0.5
2,035,601	-				-0.2
2,035,603	+				+0.9
2,035,618	-				-0.1
2,035,723	-				+0.7
2,035,723	-				-0.0
2,035,723	-				-0.0
2,036,901	+				-0.1
2,036,944	+				-0.2
2,036,963	+				+0.9
2,036,965	+				+0.6
2,036,968	+				+0.9
2,036,968	+				+0.8
2,036,968	+				-0.5
2,036,968	+				+1.2
2,036,968	+				-0.7
2,036,971	-				+0.4
2,036,971	-				+0.2
2,036,976	-				+0.5
2,036,976	-				-1.8
2,036,977	+				-1.4
2,036,977	+				+0.1
2,036,977	+				-0.7
2,036,977	+				-1.1
2,036,977	+				-0.2
2,036,977	+				-0.4
2,036,977	+				+0.8
2,036,983	+				-1.1
2,036,985	-				-0.5
2,036,985	-				-0.5
2,036,985	-				-0.0
2,036,985	-				+0.0
2,036,985	-				-0.1
2,036,985	-				-0.1
2,036,985	-				+0.7
2,037,014	+				-0.4
2,037,015	-				+1.2
2,037,042	+				-0.2
2,037,052	+				+0.9
2,037,057	+				-0.2
2,037,065	-				+0.2
2,037,065	-				-0.5
2,037,065	-				+0.1
2,037,065	-				+0.2
2,037,065	-				+0.3
2,037,071	-				+0.9
2,037,090	-				+0.7
2,037,095	-				-0.1
2,037,109	-				+1.0
2,037,109	-				-0.7
2,037,111	+				-3.0
2,037,117	+				-2.3
2,037,117	+				-1.2
2,037,121	+				+0.1
2,037,125	-				+0.3
2,037,125	-				+0.5
2,037,127	+				-3.2
2,037,130	-				+0.7
2,037,132	+				+0.2
2,037,142	-				+0.4
2,037,168	+				-1.1
2,037,183	+				-1.2
2,037,183	+				+0.4
2,037,193	-				-0.1
2,037,195	+				+0.9
2,037,195	+				-0.6
2,037,196	-				+1.4
2,037,198	+				-0.0
2,037,198	+				-0.6
2,037,200	+				-0.8
2,037,200	+				-0.7
2,037,200	+				+0.0
2,037,200	+				-0.8
2,037,200	+				-0.0
2,037,206	-				-0.8
2,037,206	-				-0.6
2,037,206	-				+0.4
2,037,206	-				+0.4
2,037,206	-				+1.1
2,037,208	-		BBR_RS18985	0.10	+0.7
2,037,208	-		BBR_RS18985	0.10	+0.2
2,037,208	-		BBR_RS18985	0.10	+1.6
2,037,208	-		BBR_RS18985	0.10	-0.3
2,037,208	-		BBR_RS18985	0.10	+0.6
2,037,208	-		BBR_RS18985	0.10	+0.3
2,037,208	-		BBR_RS18985	0.10	+0.3
2,037,208	-		BBR_RS18985	0.10	+0.2
2,037,208	-		BBR_RS18985	0.10	+0.5
2,037,208	-		BBR_RS18985	0.10	+1.1
2,037,216	-		BBR_RS18985	0.10	-0.1
2,037,227	+		BBR_RS18985	0.11	+0.1
2,037,232	+		BBR_RS18985	0.11	-0.8
2,037,232	-		BBR_RS18985	0.11	+0.3
2,037,240	-		BBR_RS18985	0.12	+0.8
2,037,240	-		BBR_RS18985	0.12	+0.5
2,037,240	-		BBR_RS18985	0.12	+0.4
2,037,260	+		BBR_RS18985	0.12	-0.5
2,037,296	+		BBR_RS18985	0.14	-0.8
2,037,306	+		BBR_RS18985	0.15	-0.5
2,037,314	-		BBR_RS18985	0.15	+0.5
2,037,314	-		BBR_RS18985	0.15	-1.0
2,037,316	-		BBR_RS18985	0.15	+0.8
2,037,318	+		BBR_RS18985	0.15	+0.0
2,037,318	+		BBR_RS18985	0.15	-0.5
2,037,323	+		BBR_RS18985	0.15	-1.8
2,037,326	+		BBR_RS18985	0.16	-0.4
2,037,326	+		BBR_RS18985	0.16	-0.8
2,037,326	-		BBR_RS18985	0.16	+0.9
2,037,326	-		BBR_RS18985	0.16	+0.1
2,037,331	+		BBR_RS18985	0.16	+1.4
2,037,334	-		BBR_RS18985	0.16	+0.1
2,037,334	-		BBR_RS18985	0.16	+0.6
2,037,336	-		BBR_RS18985	0.16	+0.4
2,037,336	-		BBR_RS18985	0.16	+0.6
2,037,342	+		BBR_RS18985	0.16	-1.3
2,037,350	+		BBR_RS18985	0.17	-2.2
2,037,358	-		BBR_RS18985	0.17	+1.3
2,037,358	-		BBR_RS18985	0.17	-0.0
2,037,366	+		BBR_RS18985	0.17	-0.7
2,037,377	+		BBR_RS18985	0.18	-0.1
2,037,377	+		BBR_RS18985	0.18	-0.3
2,037,385	-		BBR_RS18985	0.18	+1.1
2,037,389	-		BBR_RS18985	0.18	-1.6
2,037,409	+		BBR_RS18985	0.19	-0.4
2,037,409	+		BBR_RS18985	0.19	+0.3
2,037,409	+		BBR_RS18985	0.19	+0.1
2,037,409	+		BBR_RS18985	0.19	-1.0
2,037,409	+		BBR_RS18985	0.19	-0.8
2,037,409	+		BBR_RS18985	0.19	+0.0
2,037,409	+		BBR_RS18985	0.19	+0.2
2,037,409	+		BBR_RS18985	0.19	+0.8
2,037,417	-		BBR_RS18985	0.20	+0.7
2,037,417	-		BBR_RS18985	0.20	+0.4
2,037,417	-		BBR_RS18985	0.20	+0.5
2,037,417	-		BBR_RS18985	0.20	-0.0
2,037,417	-		BBR_RS18985	0.20	-1.4
2,037,417	-		BBR_RS18985	0.20	+0.7
2,037,428	+		BBR_RS18985	0.20	-1.1
2,037,434	+		BBR_RS18985	0.20	-0.6
2,037,434	+		BBR_RS18985	0.20	-1.3
2,037,436	-		BBR_RS18985	0.21	+1.3
2,037,436	-		BBR_RS18985	0.21	-0.1
2,037,436	-		BBR_RS18985	0.21	+0.1
2,037,436	-		BBR_RS18985	0.21	-0.4
2,037,436	-		BBR_RS18985	0.21	+0.9
2,037,436	-		BBR_RS18985	0.21	-0.3
2,037,446	+		BBR_RS18985	0.21	-0.2
2,037,446	+		BBR_RS18985	0.21	-0.4
2,037,448	+		BBR_RS18985	0.21	-0.6
2,037,454	-		BBR_RS18985	0.21	+0.8
2,037,454	-		BBR_RS18985	0.21	+0.9
2,037,454	-		BBR_RS18985	0.21	-1.0
2,037,454	-		BBR_RS18985	0.21	+0.8
2,037,459	+		BBR_RS18985	0.22	-0.1
2,037,459	+		BBR_RS18985	0.22	-0.6
2,037,459	+		BBR_RS18985	0.22	+0.2
2,037,459	+		BBR_RS18985	0.22	-2.0
2,037,459	+		BBR_RS18985	0.22	-1.0
2,037,464	-		BBR_RS18985	0.22	+0.1
2,037,467	-		BBR_RS18985	0.22	+0.3
2,037,468	+		BBR_RS18985	0.22	-0.4
2,037,469	+		BBR_RS18985	0.22	+0.4
2,037,471	+		BBR_RS18985	0.22	-0.8
2,037,471	+		BBR_RS18985	0.22	+0.4
2,037,477	-		BBR_RS18985	0.22	+1.0
2,037,477	-		BBR_RS18985	0.22	+0.2
2,037,479	-		BBR_RS18985	0.23	+0.2
2,037,488	+		BBR_RS18985	0.23	-0.4
2,037,489	-		BBR_RS18985	0.23	-0.8
2,037,493	+		BBR_RS18985	0.23	-0.5
2,037,493	+		BBR_RS18985	0.23	-1.1
2,037,503	+		BBR_RS18985	0.24	+0.4
2,037,563	-		BBR_RS18985	0.26	+0.1
2,037,648	-		BBR_RS18985	0.30	+0.0
2,037,652	-		BBR_RS18985	0.31	-0.8
2,037,668	-		BBR_RS18985	0.31	-1.3
2,037,692	-		BBR_RS18985	0.32	+0.5
2,037,692	-		BBR_RS18985	0.32	+0.1
2,037,699	+		BBR_RS18985	0.33	+0.3
2,037,702	-		BBR_RS18985	0.33	-0.1
2,037,702	-		BBR_RS18985	0.33	+0.5
2,037,702	-		BBR_RS18985	0.33	+0.6