Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27030

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27025 and AO356_27030 are separated by 141 nucleotidesAO356_27030 and AO356_27035 are separated by 112 nucleotides AO356_27025: AO356_27025 - peptidase, at 6,158,740 to 6,160,518 _27025 AO356_27030: AO356_27030 - alkaline proteinase inhibitor, at 6,160,660 to 6,161,097 _27030 AO356_27035: AO356_27035 - serine 3-dehydrogenase, at 6,161,210 to 6,162,664 _27035 Position (kb) 6160 6161 6162Strain fitness (log2 ratio) -2 -1 0 1at 6159.950 kb on + strand, within AO356_27025at 6159.951 kb on - strand, within AO356_27025at 6160.064 kb on + strand, within AO356_27025at 6160.064 kb on + strand, within AO356_27025at 6160.064 kb on + strand, within AO356_27025at 6160.064 kb on + strand, within AO356_27025at 6160.064 kb on + strand, within AO356_27025at 6160.064 kb on + strand, within AO356_27025at 6160.064 kb on + strand, within AO356_27025at 6160.065 kb on - strand, within AO356_27025at 6160.079 kb on + strand, within AO356_27025at 6160.079 kb on + strand, within AO356_27025at 6160.079 kb on + strand, within AO356_27025at 6160.080 kb on - strand, within AO356_27025at 6160.143 kb on + strand, within AO356_27025at 6160.144 kb on - strand, within AO356_27025at 6160.218 kb on - strand, within AO356_27025at 6160.280 kb on - strand, within AO356_27025at 6160.318 kb on + strand, within AO356_27025at 6160.377 kb on - strandat 6160.390 kb on - strandat 6160.391 kb on + strandat 6160.392 kb on - strandat 6160.392 kb on - strandat 6160.461 kb on + strandat 6160.462 kb on - strandat 6160.462 kb on - strandat 6160.480 kb on - strandat 6160.560 kb on - strandat 6160.560 kb on - strandat 6160.653 kb on + strandat 6160.681 kb on - strandat 6160.681 kb on - strandat 6160.695 kb on + strandat 6160.696 kb on - strandat 6160.696 kb on - strandat 6160.699 kb on + strandat 6160.700 kb on - strandat 6160.804 kb on - strand, within AO356_27030at 6160.994 kb on - strand, within AO356_27030at 6161.073 kb on + strandat 6161.092 kb on - strandat 6161.161 kb on + strandat 6161.161 kb on + strandat 6161.161 kb on + strandat 6161.162 kb on - strandat 6161.196 kb on - strandat 6161.206 kb on - strandat 6161.206 kb on - strandat 6161.211 kb on + strandat 6161.830 kb on - strand, within AO356_27035at 6161.917 kb on - strand, within AO356_27035at 6161.970 kb on + strand, within AO356_27035at 6161.971 kb on - strand, within AO356_27035at 6162.006 kb on + strand, within AO356_27035at 6162.006 kb on + strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.021 kb on + strand, within AO356_27035at 6162.021 kb on + strand, within AO356_27035at 6162.048 kb on + strand, within AO356_27035at 6162.049 kb on - strand, within AO356_27035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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6,159,950 + AO356_27025 0.68 -0.3
6,159,951 - AO356_27025 0.68 +1.6
6,160,064 + AO356_27025 0.74 +0.3
6,160,064 + AO356_27025 0.74 -0.6
6,160,064 + AO356_27025 0.74 +0.2
6,160,064 + AO356_27025 0.74 +0.5
6,160,064 + AO356_27025 0.74 -0.1
6,160,064 + AO356_27025 0.74 +0.1
6,160,064 + AO356_27025 0.74 +0.5
6,160,065 - AO356_27025 0.74 +0.0
6,160,079 + AO356_27025 0.75 +0.1
6,160,079 + AO356_27025 0.75 +0.5
6,160,079 + AO356_27025 0.75 -0.1
6,160,080 - AO356_27025 0.75 -1.3
6,160,143 + AO356_27025 0.79 -0.4
6,160,144 - AO356_27025 0.79 +0.5
6,160,218 - AO356_27025 0.83 +0.2
6,160,280 - AO356_27025 0.87 -0.0
6,160,318 + AO356_27025 0.89 +0.2
6,160,377 - +0.3
6,160,390 - -0.1
6,160,391 + -0.5
6,160,392 - +1.0
6,160,392 - +1.1
6,160,461 + +0.5
6,160,462 - +0.4
6,160,462 - -0.7
6,160,480 - +0.4
6,160,560 - -1.0
6,160,560 - -0.2
6,160,653 + +0.5
6,160,681 - -0.2
6,160,681 - -0.4
6,160,695 + -0.4
6,160,696 - +1.2
6,160,696 - +1.3
6,160,699 + -0.1
6,160,700 - -0.4
6,160,804 - AO356_27030 0.33 +1.6
6,160,994 - AO356_27030 0.76 -2.7
6,161,073 + +0.3
6,161,092 - +1.4
6,161,161 + +0.3
6,161,161 + +0.5
6,161,161 + -0.4
6,161,162 - +0.4
6,161,196 - -1.0
6,161,206 - -0.2
6,161,206 - -0.3
6,161,211 + +1.0
6,161,830 - AO356_27035 0.43 +1.2
6,161,917 - AO356_27035 0.49 +0.3
6,161,970 + AO356_27035 0.52 -0.5
6,161,971 - AO356_27035 0.52 -0.6
6,162,006 + AO356_27035 0.55 +0.4
6,162,006 + AO356_27035 0.55 +0.4
6,162,007 - AO356_27035 0.55 +0.6
6,162,007 - AO356_27035 0.55 +1.0
6,162,007 - AO356_27035 0.55 +0.0
6,162,007 - AO356_27035 0.55 -0.5
6,162,007 - AO356_27035 0.55 -0.2
6,162,021 + AO356_27035 0.56 -0.8
6,162,021 + AO356_27035 0.56 -0.2
6,162,048 + AO356_27035 0.58 +0.2
6,162,049 - AO356_27035 0.58 -0.1

Or see this region's nucleotide sequence