Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26535 and AO356_26540 overlap by 4 nucleotides AO356_26540 and AO356_26545 are separated by 11 nucleotides AO356_26545 and AO356_26550 are separated by 15 nucleotides
AO356_26535: AO356_26535 - superoxide dismutase, at 6,040,352 to 6,041,965
_26535
AO356_26540: AO356_26540 - antibiotic synthesis protein MbtH, at 6,041,962 to 6,042,183
_26540
AO356_26545: AO356_26545 - hypothetical protein, at 6,042,195 to 6,042,854
_26545
AO356_26550: AO356_26550 - transcription factor jumonji jmjC domain protein, at 6,042,870 to 6,043,994
_26550
Position (kb)
6042
6043 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6041.429 kb on - strand, within AO356_26535 at 6041.455 kb on + strand, within AO356_26535 at 6041.455 kb on + strand, within AO356_26535 at 6041.455 kb on + strand, within AO356_26535 at 6041.484 kb on - strand, within AO356_26535 at 6041.598 kb on - strand, within AO356_26535 at 6041.626 kb on - strand, within AO356_26535 at 6041.626 kb on - strand, within AO356_26535 at 6041.817 kb on + strand at 6041.817 kb on + strand at 6041.817 kb on + strand at 6041.817 kb on + strand at 6041.817 kb on + strand at 6041.818 kb on - strand at 6041.818 kb on - strand at 6041.818 kb on - strand at 6041.822 kb on + strand at 6041.822 kb on + strand at 6041.823 kb on - strand at 6041.871 kb on + strand at 6041.908 kb on + strand at 6041.983 kb on - strand at 6042.047 kb on + strand, within AO356_26540 at 6042.104 kb on - strand, within AO356_26540 at 6042.104 kb on - strand, within AO356_26540 at 6042.148 kb on - strand, within AO356_26540 at 6042.271 kb on - strand, within AO356_26545 at 6042.339 kb on - strand, within AO356_26545 at 6042.339 kb on - strand, within AO356_26545 at 6042.369 kb on - strand, within AO356_26545 at 6042.401 kb on + strand, within AO356_26545 at 6042.402 kb on - strand, within AO356_26545 at 6042.437 kb on + strand, within AO356_26545 at 6042.437 kb on + strand, within AO356_26545 at 6042.459 kb on + strand, within AO356_26545 at 6042.492 kb on - strand, within AO356_26545 at 6042.499 kb on + strand, within AO356_26545 at 6042.499 kb on + strand, within AO356_26545 at 6042.564 kb on - strand, within AO356_26545 at 6042.747 kb on + strand, within AO356_26545 at 6042.902 kb on + strand at 6043.088 kb on - strand, within AO356_26550 at 6043.144 kb on + strand, within AO356_26550 at 6043.144 kb on + strand, within AO356_26550 at 6043.144 kb on + strand, within AO356_26550 at 6043.361 kb on - strand, within AO356_26550 at 6043.361 kb on - strand, within AO356_26550 at 6043.438 kb on + strand, within AO356_26550 at 6043.438 kb on + strand, within AO356_26550 at 6043.489 kb on + strand, within AO356_26550 at 6043.494 kb on + strand, within AO356_26550 at 6043.553 kb on - strand, within AO356_26550 at 6043.681 kb on + strand, within AO356_26550 at 6043.682 kb on - strand, within AO356_26550 at 6043.682 kb on - strand, within AO356_26550 at 6043.704 kb on + strand, within AO356_26550 at 6043.730 kb on + strand, within AO356_26550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 6,041,429 - AO356_26535 0.67 +0.6 6,041,455 + AO356_26535 0.68 -0.0 6,041,455 + AO356_26535 0.68 +0.2 6,041,455 + AO356_26535 0.68 +0.2 6,041,484 - AO356_26535 0.70 +0.1 6,041,598 - AO356_26535 0.77 -0.1 6,041,626 - AO356_26535 0.79 -0.3 6,041,626 - AO356_26535 0.79 -0.4 6,041,817 + +0.9 6,041,817 + -2.5 6,041,817 + -0.1 6,041,817 + +0.3 6,041,817 + +0.5 6,041,818 - +0.9 6,041,818 - +0.7 6,041,818 - +0.3 6,041,822 + +0.6 6,041,822 + -0.1 6,041,823 - -0.2 6,041,871 + -0.5 6,041,908 + +1.2 6,041,983 - +0.7 6,042,047 + AO356_26540 0.38 +0.0 6,042,104 - AO356_26540 0.64 +1.6 6,042,104 - AO356_26540 0.64 +0.2 6,042,148 - AO356_26540 0.84 +0.3 6,042,271 - AO356_26545 0.12 -0.7 6,042,339 - AO356_26545 0.22 +0.4 6,042,339 - AO356_26545 0.22 +0.3 6,042,369 - AO356_26545 0.26 -0.2 6,042,401 + AO356_26545 0.31 +0.3 6,042,402 - AO356_26545 0.31 -0.5 6,042,437 + AO356_26545 0.37 +1.2 6,042,437 + AO356_26545 0.37 +0.0 6,042,459 + AO356_26545 0.40 +0.5 6,042,492 - AO356_26545 0.45 -0.5 6,042,499 + AO356_26545 0.46 +0.2 6,042,499 + AO356_26545 0.46 -0.3 6,042,564 - AO356_26545 0.56 -1.7 6,042,747 + AO356_26545 0.84 +1.9 6,042,902 + +1.2 6,043,088 - AO356_26550 0.19 +0.1 6,043,144 + AO356_26550 0.24 +0.1 6,043,144 + AO356_26550 0.24 +0.3 6,043,144 + AO356_26550 0.24 +0.7 6,043,361 - AO356_26550 0.44 -0.9 6,043,361 - AO356_26550 0.44 +0.2 6,043,438 + AO356_26550 0.50 +1.1 6,043,438 + AO356_26550 0.50 -0.0 6,043,489 + AO356_26550 0.55 +0.9 6,043,494 + AO356_26550 0.55 -1.0 6,043,553 - AO356_26550 0.61 +0.1 6,043,681 + AO356_26550 0.72 -2.4 6,043,682 - AO356_26550 0.72 +1.1 6,043,682 - AO356_26550 0.72 +0.4 6,043,704 + AO356_26550 0.74 -1.1 6,043,730 + AO356_26550 0.76 -0.7
Or see this region's nucleotide sequence