Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26545

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26535 and AO356_26540 overlap by 4 nucleotidesAO356_26540 and AO356_26545 are separated by 11 nucleotidesAO356_26545 and AO356_26550 are separated by 15 nucleotides AO356_26535: AO356_26535 - superoxide dismutase, at 6,040,352 to 6,041,965 _26535 AO356_26540: AO356_26540 - antibiotic synthesis protein MbtH, at 6,041,962 to 6,042,183 _26540 AO356_26545: AO356_26545 - hypothetical protein, at 6,042,195 to 6,042,854 _26545 AO356_26550: AO356_26550 - transcription factor jumonji jmjC domain protein, at 6,042,870 to 6,043,994 _26550 Position (kb) 6042 6043Strain fitness (log2 ratio) -2 -1 0 1 2at 6041.429 kb on - strand, within AO356_26535at 6041.455 kb on + strand, within AO356_26535at 6041.455 kb on + strand, within AO356_26535at 6041.455 kb on + strand, within AO356_26535at 6041.484 kb on - strand, within AO356_26535at 6041.598 kb on - strand, within AO356_26535at 6041.626 kb on - strand, within AO356_26535at 6041.626 kb on - strand, within AO356_26535at 6041.817 kb on + strandat 6041.817 kb on + strandat 6041.817 kb on + strandat 6041.817 kb on + strandat 6041.817 kb on + strandat 6041.818 kb on - strandat 6041.818 kb on - strandat 6041.818 kb on - strandat 6041.822 kb on + strandat 6041.822 kb on + strandat 6041.823 kb on - strandat 6041.871 kb on + strandat 6041.908 kb on + strandat 6041.983 kb on - strandat 6042.047 kb on + strand, within AO356_26540at 6042.104 kb on - strand, within AO356_26540at 6042.104 kb on - strand, within AO356_26540at 6042.148 kb on - strand, within AO356_26540at 6042.271 kb on - strand, within AO356_26545at 6042.339 kb on - strand, within AO356_26545at 6042.339 kb on - strand, within AO356_26545at 6042.369 kb on - strand, within AO356_26545at 6042.401 kb on + strand, within AO356_26545at 6042.402 kb on - strand, within AO356_26545at 6042.437 kb on + strand, within AO356_26545at 6042.437 kb on + strand, within AO356_26545at 6042.459 kb on + strand, within AO356_26545at 6042.492 kb on - strand, within AO356_26545at 6042.499 kb on + strand, within AO356_26545at 6042.499 kb on + strand, within AO356_26545at 6042.564 kb on - strand, within AO356_26545at 6042.747 kb on + strand, within AO356_26545at 6042.902 kb on + strandat 6043.088 kb on - strand, within AO356_26550at 6043.144 kb on + strand, within AO356_26550at 6043.144 kb on + strand, within AO356_26550at 6043.144 kb on + strand, within AO356_26550at 6043.361 kb on - strand, within AO356_26550at 6043.361 kb on - strand, within AO356_26550at 6043.438 kb on + strand, within AO356_26550at 6043.438 kb on + strand, within AO356_26550at 6043.489 kb on + strand, within AO356_26550at 6043.494 kb on + strand, within AO356_26550at 6043.553 kb on - strand, within AO356_26550at 6043.681 kb on + strand, within AO356_26550at 6043.682 kb on - strand, within AO356_26550at 6043.682 kb on - strand, within AO356_26550at 6043.704 kb on + strand, within AO356_26550at 6043.730 kb on + strand, within AO356_26550

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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6,041,429 - AO356_26535 0.67 +0.6
6,041,455 + AO356_26535 0.68 -0.0
6,041,455 + AO356_26535 0.68 +0.2
6,041,455 + AO356_26535 0.68 +0.2
6,041,484 - AO356_26535 0.70 +0.1
6,041,598 - AO356_26535 0.77 -0.1
6,041,626 - AO356_26535 0.79 -0.3
6,041,626 - AO356_26535 0.79 -0.4
6,041,817 + +0.9
6,041,817 + -2.5
6,041,817 + -0.1
6,041,817 + +0.3
6,041,817 + +0.5
6,041,818 - +0.9
6,041,818 - +0.7
6,041,818 - +0.3
6,041,822 + +0.6
6,041,822 + -0.1
6,041,823 - -0.2
6,041,871 + -0.5
6,041,908 + +1.2
6,041,983 - +0.7
6,042,047 + AO356_26540 0.38 +0.0
6,042,104 - AO356_26540 0.64 +1.6
6,042,104 - AO356_26540 0.64 +0.2
6,042,148 - AO356_26540 0.84 +0.3
6,042,271 - AO356_26545 0.12 -0.7
6,042,339 - AO356_26545 0.22 +0.4
6,042,339 - AO356_26545 0.22 +0.3
6,042,369 - AO356_26545 0.26 -0.2
6,042,401 + AO356_26545 0.31 +0.3
6,042,402 - AO356_26545 0.31 -0.5
6,042,437 + AO356_26545 0.37 +1.2
6,042,437 + AO356_26545 0.37 +0.0
6,042,459 + AO356_26545 0.40 +0.5
6,042,492 - AO356_26545 0.45 -0.5
6,042,499 + AO356_26545 0.46 +0.2
6,042,499 + AO356_26545 0.46 -0.3
6,042,564 - AO356_26545 0.56 -1.7
6,042,747 + AO356_26545 0.84 +1.9
6,042,902 + +1.2
6,043,088 - AO356_26550 0.19 +0.1
6,043,144 + AO356_26550 0.24 +0.1
6,043,144 + AO356_26550 0.24 +0.3
6,043,144 + AO356_26550 0.24 +0.7
6,043,361 - AO356_26550 0.44 -0.9
6,043,361 - AO356_26550 0.44 +0.2
6,043,438 + AO356_26550 0.50 +1.1
6,043,438 + AO356_26550 0.50 -0.0
6,043,489 + AO356_26550 0.55 +0.9
6,043,494 + AO356_26550 0.55 -1.0
6,043,553 - AO356_26550 0.61 +0.1
6,043,681 + AO356_26550 0.72 -2.4
6,043,682 - AO356_26550 0.72 +1.1
6,043,682 - AO356_26550 0.72 +0.4
6,043,704 + AO356_26550 0.74 -1.1
6,043,730 + AO356_26550 0.76 -0.7

Or see this region's nucleotide sequence