Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16070

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16060 and AO356_16065 are separated by 365 nucleotidesAO356_16065 and AO356_16070 are separated by 3 nucleotidesAO356_16070 and AO356_16075 are separated by 789 nucleotides AO356_16060: AO356_16060 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,632,134 to 3,632,934 _16060 AO356_16065: AO356_16065 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 3,633,300 to 3,633,785 _16065 AO356_16070: AO356_16070 - poly(A) polymerase, at 3,633,789 to 3,635,186 _16070 AO356_16075: AO356_16075 - Fis family transcriptional regulator, at 3,635,976 to 3,637,409 _16075 Position (kb) 3633 3634 3635 3636Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.949 kb on + strandat 3632.949 kb on + strandat 3632.991 kb on - strandat 3632.991 kb on - strandat 3632.991 kb on - strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.996 kb on + strandat 3633.011 kb on + strandat 3633.011 kb on + strandat 3633.011 kb on + strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.027 kb on - strandat 3633.027 kb on - strandat 3633.027 kb on - strandat 3633.048 kb on - strandat 3633.048 kb on - strandat 3633.048 kb on - strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.078 kb on + strandat 3633.078 kb on + strandat 3633.078 kb on + strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.156 kb on + strandat 3633.156 kb on + strandat 3633.156 kb on + strandat 3633.157 kb on - strandat 3633.157 kb on - strandat 3633.773 kb on - strandat 3633.777 kb on - strandat 3633.777 kb on - strandat 3633.777 kb on - strandat 3633.790 kb on + strandat 3634.333 kb on + strand, within AO356_16070at 3634.333 kb on + strand, within AO356_16070at 3634.333 kb on + strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.691 kb on - strand, within AO356_16070at 3634.691 kb on - strand, within AO356_16070at 3634.691 kb on - strand, within AO356_16070at 3634.693 kb on + strand, within AO356_16070at 3634.694 kb on - strand, within AO356_16070at 3634.747 kb on + strand, within AO356_16070at 3634.748 kb on - strand, within AO356_16070at 3634.767 kb on - strand, within AO356_16070at 3634.767 kb on - strand, within AO356_16070at 3635.018 kb on - strand, within AO356_16070at 3635.018 kb on - strand, within AO356_16070at 3635.018 kb on - strand, within AO356_16070at 3635.142 kb on - strandat 3635.142 kb on - strandat 3635.142 kb on - strandat 3635.209 kb on - strandat 3635.253 kb on + strandat 3635.253 kb on + strandat 3635.254 kb on - strandat 3635.260 kb on + strandat 3635.260 kb on + strandat 3635.260 kb on + strandat 3635.261 kb on - strandat 3635.276 kb on + strandat 3635.276 kb on + strandat 3635.277 kb on - strandat 3635.277 kb on - strandat 3635.322 kb on + strandat 3635.322 kb on + strandat 3635.322 kb on + strandat 3635.323 kb on - strandat 3635.381 kb on + strandat 3635.381 kb on + strandat 3635.382 kb on - strandat 3635.382 kb on - strandat 3635.382 kb on - strandat 3635.400 kb on + strandat 3635.400 kb on + strandat 3635.401 kb on - strandat 3635.401 kb on - strandat 3635.403 kb on + strandat 3635.565 kb on + strandat 3635.565 kb on + strandat 3635.565 kb on + strandat 3635.566 kb on - strandat 3635.601 kb on + strandat 3635.601 kb on + strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.627 kb on + strandat 3635.628 kb on - strandat 3635.655 kb on - strandat 3635.655 kb on - strandat 3635.678 kb on + strandat 3635.685 kb on - strandat 3635.706 kb on + strandat 3635.717 kb on + strandat 3635.726 kb on + strandat 3635.726 kb on + strandat 3635.726 kb on + strandat 3635.727 kb on - strandat 3635.777 kb on + strandat 3635.777 kb on + strandat 3635.778 kb on - strandat 3635.778 kb on - strandat 3635.778 kb on - strandat 3635.778 kb on - strandat 3635.778 kb on - strandat 3635.784 kb on - strandat 3635.784 kb on - strandat 3635.785 kb on + strandat 3635.785 kb on + strandat 3635.829 kb on + strandat 3635.846 kb on + strandat 3635.846 kb on + strandat 3635.846 kb on + strandat 3635.846 kb on + strandat 3635.927 kb on - strandat 3635.927 kb on - strandat 3636.124 kb on + strand, within AO356_16075at 3636.125 kb on - strand, within AO356_16075at 3636.125 kb on - strand, within AO356_16075at 3636.125 kb on - strand, within AO356_16075

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,632,862 - +1.7
3,632,862 - +0.5
3,632,862 - -0.1
3,632,862 - +1.4
3,632,862 - +0.5
3,632,926 - +0.7
3,632,926 - +0.8
3,632,926 - -1.6
3,632,926 - -0.2
3,632,926 - -0.1
3,632,926 - +0.3
3,632,926 - -0.4
3,632,949 + +0.3
3,632,949 + -0.0
3,632,991 - +0.7
3,632,991 - -0.1
3,632,991 - +0.6
3,632,994 + -0.3
3,632,994 + -0.2
3,632,994 + +0.3
3,632,994 + +1.1
3,632,994 + +0.6
3,632,995 - +0.3
3,632,995 - +0.1
3,632,995 - +0.4
3,632,995 - -0.9
3,632,995 - +0.5
3,632,995 - +0.6
3,632,995 - +1.1
3,632,995 - +0.5
3,632,995 - +0.5
3,632,995 - +0.7
3,632,995 - -0.3
3,632,996 + +0.6
3,633,011 + +0.5
3,633,011 + -0.4
3,633,011 + -0.3
3,633,012 - +0.3
3,633,012 - +0.2
3,633,012 - +0.1
3,633,012 - +0.3
3,633,012 - +0.4
3,633,026 + +0.8
3,633,026 + -0.8
3,633,026 + +0.1
3,633,026 + -0.1
3,633,026 + -1.2
3,633,026 + +0.3
3,633,027 - -0.5
3,633,027 - +0.5
3,633,027 - -0.5
3,633,048 - +0.2
3,633,048 - +0.2
3,633,048 - +0.6
3,633,076 + +1.3
3,633,076 + +0.5
3,633,076 + -1.9
3,633,076 + -0.3
3,633,076 + +1.4
3,633,077 - +1.2
3,633,077 - +0.2
3,633,077 - -0.6
3,633,077 - +0.3
3,633,077 - +0.3
3,633,078 + +1.0
3,633,078 + -1.3
3,633,078 + +0.1
3,633,079 - +0.5
3,633,079 - -0.0
3,633,079 - -0.1
3,633,079 - +0.4
3,633,079 - +1.6
3,633,079 - -0.1
3,633,156 + +0.0
3,633,156 + -1.5
3,633,156 + +0.1
3,633,157 - +0.6
3,633,157 - +1.2
3,633,773 - -0.3
3,633,777 - -1.6
3,633,777 - -1.8
3,633,777 - +0.8
3,633,790 + -0.8
3,634,333 + AO356_16070 0.39 -2.1
3,634,333 + AO356_16070 0.39 +0.4
3,634,333 + AO356_16070 0.39 +0.4
3,634,334 - AO356_16070 0.39 -1.2
3,634,334 - AO356_16070 0.39 -0.7
3,634,334 - AO356_16070 0.39 -0.4
3,634,334 - AO356_16070 0.39 -0.8
3,634,334 - AO356_16070 0.39 +0.7
3,634,691 - AO356_16070 0.65 -0.7
3,634,691 - AO356_16070 0.65 -1.6
3,634,691 - AO356_16070 0.65 -1.5
3,634,693 + AO356_16070 0.65 -0.5
3,634,694 - AO356_16070 0.65 +0.1
3,634,747 + AO356_16070 0.69 -1.9
3,634,748 - AO356_16070 0.69 -2.3
3,634,767 - AO356_16070 0.70 -0.3
3,634,767 - AO356_16070 0.70 -0.0
3,635,018 - AO356_16070 0.88 -1.6
3,635,018 - AO356_16070 0.88 -2.3
3,635,018 - AO356_16070 0.88 -2.9
3,635,142 - -0.4
3,635,142 - -0.0
3,635,142 - +0.7
3,635,209 - +1.0
3,635,253 + -2.1
3,635,253 + -0.7
3,635,254 - +0.3
3,635,260 + -0.4
3,635,260 + +0.3
3,635,260 + -1.0
3,635,261 - -0.1
3,635,276 + +0.3
3,635,276 + -0.3
3,635,277 - +0.6
3,635,277 - -1.2
3,635,322 + +0.2
3,635,322 + +1.5
3,635,322 + -0.0
3,635,323 - -0.4
3,635,381 + -0.2
3,635,381 + -0.0
3,635,382 - -0.4
3,635,382 - +0.3
3,635,382 - -0.8
3,635,400 + +2.0
3,635,400 + +0.7
3,635,401 - +0.3
3,635,401 - +0.5
3,635,403 + -1.2
3,635,565 + +0.2
3,635,565 + -0.5
3,635,565 + +0.1
3,635,566 - +0.1
3,635,601 + -0.2
3,635,601 + +0.4
3,635,602 - -0.6
3,635,602 - +2.0
3,635,602 - -0.2
3,635,602 - -0.8
3,635,602 - +0.8
3,635,602 - +0.2
3,635,627 + -0.0
3,635,628 - +0.8
3,635,655 - +0.3
3,635,655 - +1.7
3,635,678 + +0.2
3,635,685 - +1.4
3,635,706 + -0.0
3,635,717 + -0.5
3,635,726 + -2.4
3,635,726 + +0.6
3,635,726 + -0.3
3,635,727 - -1.2
3,635,777 + +0.4
3,635,777 + -0.2
3,635,778 - +0.2
3,635,778 - +0.3
3,635,778 - +0.6
3,635,778 - +0.1
3,635,778 - +0.2
3,635,784 - +0.4
3,635,784 - +0.4
3,635,785 + -0.0
3,635,785 + -0.4
3,635,829 + +0.3
3,635,846 + +1.1
3,635,846 + -0.6
3,635,846 + -0.7
3,635,846 + -0.0
3,635,927 - +0.1
3,635,927 - -0.5
3,636,124 + AO356_16075 0.10 -2.6
3,636,125 - AO356_16075 0.10 -1.3
3,636,125 - AO356_16075 0.10 -2.5
3,636,125 - AO356_16075 0.10 -2.9

Or see this region's nucleotide sequence