Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16060 and AO356_16065 are separated by 365 nucleotides AO356_16065 and AO356_16070 are separated by 3 nucleotides AO356_16070 and AO356_16075 are separated by 789 nucleotides
AO356_16060: AO356_16060 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,632,134 to 3,632,934
_16060
AO356_16065: AO356_16065 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 3,633,300 to 3,633,785
_16065
AO356_16070: AO356_16070 - poly(A) polymerase, at 3,633,789 to 3,635,186
_16070
AO356_16075: AO356_16075 - Fis family transcriptional regulator, at 3,635,976 to 3,637,409
_16075
Position (kb)
3633
3634
3635
3636 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3632.862 kb on - strand at 3632.862 kb on - strand at 3632.862 kb on - strand at 3632.862 kb on - strand at 3632.862 kb on - strand at 3632.926 kb on - strand at 3632.926 kb on - strand at 3632.926 kb on - strand at 3632.926 kb on - strand at 3632.926 kb on - strand at 3632.926 kb on - strand at 3632.926 kb on - strand at 3632.949 kb on + strand at 3632.949 kb on + strand at 3632.991 kb on - strand at 3632.991 kb on - strand at 3632.991 kb on - strand at 3632.994 kb on + strand at 3632.994 kb on + strand at 3632.994 kb on + strand at 3632.994 kb on + strand at 3632.994 kb on + strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.995 kb on - strand at 3632.996 kb on + strand at 3633.011 kb on + strand at 3633.011 kb on + strand at 3633.011 kb on + strand at 3633.012 kb on - strand at 3633.012 kb on - strand at 3633.012 kb on - strand at 3633.012 kb on - strand at 3633.012 kb on - strand at 3633.026 kb on + strand at 3633.026 kb on + strand at 3633.026 kb on + strand at 3633.026 kb on + strand at 3633.026 kb on + strand at 3633.026 kb on + strand at 3633.027 kb on - strand at 3633.027 kb on - strand at 3633.027 kb on - strand at 3633.048 kb on - strand at 3633.048 kb on - strand at 3633.048 kb on - strand at 3633.076 kb on + strand at 3633.076 kb on + strand at 3633.076 kb on + strand at 3633.076 kb on + strand at 3633.076 kb on + strand at 3633.077 kb on - strand at 3633.077 kb on - strand at 3633.077 kb on - strand at 3633.077 kb on - strand at 3633.077 kb on - strand at 3633.078 kb on + strand at 3633.078 kb on + strand at 3633.078 kb on + strand at 3633.079 kb on - strand at 3633.079 kb on - strand at 3633.079 kb on - strand at 3633.079 kb on - strand at 3633.079 kb on - strand at 3633.079 kb on - strand at 3633.156 kb on + strand at 3633.156 kb on + strand at 3633.156 kb on + strand at 3633.157 kb on - strand at 3633.157 kb on - strand at 3633.773 kb on - strand at 3633.777 kb on - strand at 3633.777 kb on - strand at 3633.777 kb on - strand at 3633.790 kb on + strand at 3634.333 kb on + strand, within AO356_16070 at 3634.333 kb on + strand, within AO356_16070 at 3634.333 kb on + strand, within AO356_16070 at 3634.334 kb on - strand, within AO356_16070 at 3634.334 kb on - strand, within AO356_16070 at 3634.334 kb on - strand, within AO356_16070 at 3634.334 kb on - strand, within AO356_16070 at 3634.334 kb on - strand, within AO356_16070 at 3634.691 kb on - strand, within AO356_16070 at 3634.691 kb on - strand, within AO356_16070 at 3634.691 kb on - strand, within AO356_16070 at 3634.693 kb on + strand, within AO356_16070 at 3634.694 kb on - strand, within AO356_16070 at 3634.747 kb on + strand, within AO356_16070 at 3634.748 kb on - strand, within AO356_16070 at 3634.767 kb on - strand, within AO356_16070 at 3634.767 kb on - strand, within AO356_16070 at 3635.018 kb on - strand, within AO356_16070 at 3635.018 kb on - strand, within AO356_16070 at 3635.018 kb on - strand, within AO356_16070 at 3635.142 kb on - strand at 3635.142 kb on - strand at 3635.142 kb on - strand at 3635.209 kb on - strand at 3635.253 kb on + strand at 3635.253 kb on + strand at 3635.254 kb on - strand at 3635.260 kb on + strand at 3635.260 kb on + strand at 3635.260 kb on + strand at 3635.261 kb on - strand at 3635.276 kb on + strand at 3635.276 kb on + strand at 3635.277 kb on - strand at 3635.277 kb on - strand at 3635.322 kb on + strand at 3635.322 kb on + strand at 3635.322 kb on + strand at 3635.323 kb on - strand at 3635.381 kb on + strand at 3635.381 kb on + strand at 3635.382 kb on - strand at 3635.382 kb on - strand at 3635.382 kb on - strand at 3635.400 kb on + strand at 3635.400 kb on + strand at 3635.401 kb on - strand at 3635.401 kb on - strand at 3635.403 kb on + strand at 3635.565 kb on + strand at 3635.565 kb on + strand at 3635.565 kb on + strand at 3635.566 kb on - strand at 3635.601 kb on + strand at 3635.601 kb on + strand at 3635.602 kb on - strand at 3635.602 kb on - strand at 3635.602 kb on - strand at 3635.602 kb on - strand at 3635.602 kb on - strand at 3635.602 kb on - strand at 3635.627 kb on + strand at 3635.628 kb on - strand at 3635.655 kb on - strand at 3635.655 kb on - strand at 3635.678 kb on + strand at 3635.685 kb on - strand at 3635.706 kb on + strand at 3635.717 kb on + strand at 3635.726 kb on + strand at 3635.726 kb on + strand at 3635.726 kb on + strand at 3635.727 kb on - strand at 3635.777 kb on + strand at 3635.777 kb on + strand at 3635.778 kb on - strand at 3635.778 kb on - strand at 3635.778 kb on - strand at 3635.778 kb on - strand at 3635.778 kb on - strand at 3635.784 kb on - strand at 3635.784 kb on - strand at 3635.785 kb on + strand at 3635.785 kb on + strand at 3635.829 kb on + strand at 3635.846 kb on + strand at 3635.846 kb on + strand at 3635.846 kb on + strand at 3635.846 kb on + strand at 3635.927 kb on - strand at 3635.927 kb on - strand at 3636.124 kb on + strand, within AO356_16075 at 3636.125 kb on - strand, within AO356_16075 at 3636.125 kb on - strand, within AO356_16075 at 3636.125 kb on - strand, within AO356_16075
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 3,632,862 - +1.7 3,632,862 - +0.5 3,632,862 - -0.1 3,632,862 - +1.4 3,632,862 - +0.5 3,632,926 - +0.7 3,632,926 - +0.8 3,632,926 - -1.6 3,632,926 - -0.2 3,632,926 - -0.1 3,632,926 - +0.3 3,632,926 - -0.4 3,632,949 + +0.3 3,632,949 + -0.0 3,632,991 - +0.7 3,632,991 - -0.1 3,632,991 - +0.6 3,632,994 + -0.3 3,632,994 + -0.2 3,632,994 + +0.3 3,632,994 + +1.1 3,632,994 + +0.6 3,632,995 - +0.3 3,632,995 - +0.1 3,632,995 - +0.4 3,632,995 - -0.9 3,632,995 - +0.5 3,632,995 - +0.6 3,632,995 - +1.1 3,632,995 - +0.5 3,632,995 - +0.5 3,632,995 - +0.7 3,632,995 - -0.3 3,632,996 + +0.6 3,633,011 + +0.5 3,633,011 + -0.4 3,633,011 + -0.3 3,633,012 - +0.3 3,633,012 - +0.2 3,633,012 - +0.1 3,633,012 - +0.3 3,633,012 - +0.4 3,633,026 + +0.8 3,633,026 + -0.8 3,633,026 + +0.1 3,633,026 + -0.1 3,633,026 + -1.2 3,633,026 + +0.3 3,633,027 - -0.5 3,633,027 - +0.5 3,633,027 - -0.5 3,633,048 - +0.2 3,633,048 - +0.2 3,633,048 - +0.6 3,633,076 + +1.3 3,633,076 + +0.5 3,633,076 + -1.9 3,633,076 + -0.3 3,633,076 + +1.4 3,633,077 - +1.2 3,633,077 - +0.2 3,633,077 - -0.6 3,633,077 - +0.3 3,633,077 - +0.3 3,633,078 + +1.0 3,633,078 + -1.3 3,633,078 + +0.1 3,633,079 - +0.5 3,633,079 - -0.0 3,633,079 - -0.1 3,633,079 - +0.4 3,633,079 - +1.6 3,633,079 - -0.1 3,633,156 + +0.0 3,633,156 + -1.5 3,633,156 + +0.1 3,633,157 - +0.6 3,633,157 - +1.2 3,633,773 - -0.3 3,633,777 - -1.6 3,633,777 - -1.8 3,633,777 - +0.8 3,633,790 + -0.8 3,634,333 + AO356_16070 0.39 -2.1 3,634,333 + AO356_16070 0.39 +0.4 3,634,333 + AO356_16070 0.39 +0.4 3,634,334 - AO356_16070 0.39 -1.2 3,634,334 - AO356_16070 0.39 -0.7 3,634,334 - AO356_16070 0.39 -0.4 3,634,334 - AO356_16070 0.39 -0.8 3,634,334 - AO356_16070 0.39 +0.7 3,634,691 - AO356_16070 0.65 -0.7 3,634,691 - AO356_16070 0.65 -1.6 3,634,691 - AO356_16070 0.65 -1.5 3,634,693 + AO356_16070 0.65 -0.5 3,634,694 - AO356_16070 0.65 +0.1 3,634,747 + AO356_16070 0.69 -1.9 3,634,748 - AO356_16070 0.69 -2.3 3,634,767 - AO356_16070 0.70 -0.3 3,634,767 - AO356_16070 0.70 -0.0 3,635,018 - AO356_16070 0.88 -1.6 3,635,018 - AO356_16070 0.88 -2.3 3,635,018 - AO356_16070 0.88 -2.9 3,635,142 - -0.4 3,635,142 - -0.0 3,635,142 - +0.7 3,635,209 - +1.0 3,635,253 + -2.1 3,635,253 + -0.7 3,635,254 - +0.3 3,635,260 + -0.4 3,635,260 + +0.3 3,635,260 + -1.0 3,635,261 - -0.1 3,635,276 + +0.3 3,635,276 + -0.3 3,635,277 - +0.6 3,635,277 - -1.2 3,635,322 + +0.2 3,635,322 + +1.5 3,635,322 + -0.0 3,635,323 - -0.4 3,635,381 + -0.2 3,635,381 + -0.0 3,635,382 - -0.4 3,635,382 - +0.3 3,635,382 - -0.8 3,635,400 + +2.0 3,635,400 + +0.7 3,635,401 - +0.3 3,635,401 - +0.5 3,635,403 + -1.2 3,635,565 + +0.2 3,635,565 + -0.5 3,635,565 + +0.1 3,635,566 - +0.1 3,635,601 + -0.2 3,635,601 + +0.4 3,635,602 - -0.6 3,635,602 - +2.0 3,635,602 - -0.2 3,635,602 - -0.8 3,635,602 - +0.8 3,635,602 - +0.2 3,635,627 + -0.0 3,635,628 - +0.8 3,635,655 - +0.3 3,635,655 - +1.7 3,635,678 + +0.2 3,635,685 - +1.4 3,635,706 + -0.0 3,635,717 + -0.5 3,635,726 + -2.4 3,635,726 + +0.6 3,635,726 + -0.3 3,635,727 - -1.2 3,635,777 + +0.4 3,635,777 + -0.2 3,635,778 - +0.2 3,635,778 - +0.3 3,635,778 - +0.6 3,635,778 - +0.1 3,635,778 - +0.2 3,635,784 - +0.4 3,635,784 - +0.4 3,635,785 + -0.0 3,635,785 + -0.4 3,635,829 + +0.3 3,635,846 + +1.1 3,635,846 + -0.6 3,635,846 + -0.7 3,635,846 + -0.0 3,635,927 - +0.1 3,635,927 - -0.5 3,636,124 + AO356_16075 0.10 -2.6 3,636,125 - AO356_16075 0.10 -1.3 3,636,125 - AO356_16075 0.10 -2.5 3,636,125 - AO356_16075 0.10 -2.9
Or see this region's nucleotide sequence