Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16055

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16050 and AO356_16055 are separated by 327 nucleotidesAO356_16055 and AO356_16060 overlap by 4 nucleotides AO356_16050: AO356_16050 - glucose-6-phosphate isomerase, at 3,629,285 to 3,630,949 _16050 AO356_16055: AO356_16055 - pantoate--beta-alanine ligase, at 3,631,277 to 3,632,137 _16055 AO356_16060: AO356_16060 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,632,134 to 3,632,934 _16060 Position (kb) 3631 3632 3633Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3630.578 kb on - strand, within AO356_16050at 3630.943 kb on - strandat 3630.968 kb on + strandat 3630.987 kb on - strandat 3630.987 kb on - strandat 3631.062 kb on + strandat 3631.062 kb on + strandat 3631.062 kb on + strandat 3631.063 kb on - strandat 3631.067 kb on + strandat 3631.067 kb on + strandat 3631.067 kb on + strandat 3631.067 kb on + strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.125 kb on + strandat 3631.125 kb on + strandat 3631.126 kb on - strandat 3631.126 kb on - strandat 3632.192 kb on + strandat 3632.193 kb on - strandat 3632.193 kb on - strandat 3632.193 kb on - strandat 3632.193 kb on - strandat 3632.193 kb on - strandat 3632.193 kb on - strandat 3632.193 kb on - strandat 3632.193 kb on - strandat 3632.193 kb on - strandat 3632.487 kb on - strand, within AO356_16060at 3632.487 kb on - strand, within AO356_16060at 3632.500 kb on - strand, within AO356_16060at 3632.500 kb on - strand, within AO356_16060at 3632.500 kb on - strand, within AO356_16060at 3632.667 kb on - strand, within AO356_16060at 3632.735 kb on + strand, within AO356_16060at 3632.736 kb on - strand, within AO356_16060at 3632.736 kb on - strand, within AO356_16060at 3632.736 kb on - strand, within AO356_16060at 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.949 kb on + strandat 3632.949 kb on + strandat 3632.991 kb on - strandat 3632.991 kb on - strandat 3632.991 kb on - strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.996 kb on + strandat 3633.011 kb on + strandat 3633.011 kb on + strandat 3633.011 kb on + strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.027 kb on - strandat 3633.027 kb on - strandat 3633.027 kb on - strandat 3633.048 kb on - strandat 3633.048 kb on - strandat 3633.048 kb on - strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.078 kb on + strandat 3633.078 kb on + strandat 3633.078 kb on + strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,630,578 - AO356_16050 0.78 -1.5
3,630,943 - -2.9
3,630,968 + -1.3
3,630,987 - -1.8
3,630,987 - -1.4
3,631,062 + -2.6
3,631,062 + -3.6
3,631,062 + -3.4
3,631,063 - -0.6
3,631,067 + -3.6
3,631,067 + -0.6
3,631,067 + -1.7
3,631,067 + -1.7
3,631,068 - -1.0
3,631,068 - -2.1
3,631,068 - -0.9
3,631,068 - +0.3
3,631,068 - +0.8
3,631,068 - -1.0
3,631,125 + -3.9
3,631,125 + -2.0
3,631,126 - -0.4
3,631,126 - +0.9
3,632,192 + +0.5
3,632,193 - +0.3
3,632,193 - +0.2
3,632,193 - -0.7
3,632,193 - +0.1
3,632,193 - -0.2
3,632,193 - -1.1
3,632,193 - +0.6
3,632,193 - +0.7
3,632,193 - +0.2
3,632,487 - AO356_16060 0.44 -0.2
3,632,487 - AO356_16060 0.44 -1.5
3,632,500 - AO356_16060 0.46 -0.3
3,632,500 - AO356_16060 0.46 +0.1
3,632,500 - AO356_16060 0.46 -0.0
3,632,667 - AO356_16060 0.67 +0.8
3,632,735 + AO356_16060 0.75 +0.7
3,632,736 - AO356_16060 0.75 -0.2
3,632,736 - AO356_16060 0.75 +0.4
3,632,736 - AO356_16060 0.75 -0.7
3,632,862 - +1.7
3,632,862 - +0.5
3,632,862 - -0.1
3,632,862 - +1.4
3,632,862 - +0.5
3,632,926 - +0.7
3,632,926 - +0.8
3,632,926 - -1.6
3,632,926 - -0.2
3,632,926 - -0.1
3,632,926 - +0.3
3,632,926 - -0.4
3,632,949 + +0.3
3,632,949 + -0.0
3,632,991 - +0.7
3,632,991 - -0.1
3,632,991 - +0.6
3,632,994 + -0.3
3,632,994 + -0.2
3,632,994 + +0.3
3,632,994 + +1.1
3,632,994 + +0.6
3,632,995 - +0.3
3,632,995 - +0.1
3,632,995 - +0.4
3,632,995 - -0.9
3,632,995 - +0.5
3,632,995 - +0.6
3,632,995 - +1.1
3,632,995 - +0.5
3,632,995 - +0.5
3,632,995 - +0.7
3,632,995 - -0.3
3,632,996 + +0.6
3,633,011 + +0.5
3,633,011 + -0.4
3,633,011 + -0.3
3,633,012 - +0.3
3,633,012 - +0.2
3,633,012 - +0.1
3,633,012 - +0.3
3,633,012 - +0.4
3,633,026 + +0.8
3,633,026 + -0.8
3,633,026 + +0.1
3,633,026 + -0.1
3,633,026 + -1.2
3,633,026 + +0.3
3,633,027 - -0.5
3,633,027 - +0.5
3,633,027 - -0.5
3,633,048 - +0.2
3,633,048 - +0.2
3,633,048 - +0.6
3,633,076 + +1.3
3,633,076 + +0.5
3,633,076 + -1.9
3,633,076 + -0.3
3,633,076 + +1.4
3,633,077 - +1.2
3,633,077 - +0.2
3,633,077 - -0.6
3,633,077 - +0.3
3,633,077 - +0.3
3,633,078 + +1.0
3,633,078 + -1.3
3,633,078 + +0.1
3,633,079 - +0.5
3,633,079 - -0.0
3,633,079 - -0.1
3,633,079 - +0.4
3,633,079 - +1.6
3,633,079 - -0.1

Or see this region's nucleotide sequence