Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16045

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16040 and AO356_16045 are separated by 158 nucleotidesAO356_16045 and AO356_16050 are separated by 200 nucleotides AO356_16040: AO356_16040 - SAM-dependent methyltransferase, at 3,625,972 to 3,626,988 _16040 AO356_16045: AO356_16045 - acetyl-CoA synthetase, at 3,627,147 to 3,629,084 _16045 AO356_16050: AO356_16050 - glucose-6-phosphate isomerase, at 3,629,285 to 3,630,949 _16050 Position (kb) 3627 3628 3629 3630Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3626.270 kb on + strand, within AO356_16040at 3626.271 kb on - strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.363 kb on + strand, within AO356_16040at 3626.363 kb on + strand, within AO356_16040at 3626.363 kb on + strand, within AO356_16040at 3626.364 kb on - strand, within AO356_16040at 3626.510 kb on + strand, within AO356_16040at 3626.511 kb on - strand, within AO356_16040at 3626.684 kb on + strand, within AO356_16040at 3626.685 kb on - strand, within AO356_16040at 3626.685 kb on - strand, within AO356_16040at 3626.735 kb on + strand, within AO356_16040at 3626.735 kb on + strand, within AO356_16040at 3626.736 kb on - strand, within AO356_16040at 3627.032 kb on + strandat 3627.032 kb on + strandat 3627.032 kb on + strandat 3627.254 kb on + strandat 3627.255 kb on - strandat 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.566 kb on - strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.608 kb on - strand, within AO356_16045at 3627.608 kb on - strand, within AO356_16045at 3627.608 kb on - strand, within AO356_16045at 3627.608 kb on - strand, within AO356_16045at 3627.611 kb on - strand, within AO356_16045at 3627.611 kb on - strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.632 kb on - strand, within AO356_16045at 3627.632 kb on - strand, within AO356_16045at 3627.632 kb on - strand, within AO356_16045at 3627.632 kb on - strand, within AO356_16045at 3627.661 kb on + strand, within AO356_16045at 3627.661 kb on + strand, within AO356_16045at 3627.705 kb on + strand, within AO356_16045at 3627.705 kb on + strand, within AO356_16045at 3627.705 kb on + strand, within AO356_16045at 3627.705 kb on + strand, within AO356_16045at 3627.706 kb on - strand, within AO356_16045at 3627.706 kb on - strand, within AO356_16045at 3627.762 kb on + strand, within AO356_16045at 3627.762 kb on + strand, within AO356_16045at 3627.762 kb on + strand, within AO356_16045at 3627.763 kb on - strand, within AO356_16045at 3627.763 kb on - strand, within AO356_16045at 3627.901 kb on + strand, within AO356_16045at 3627.901 kb on + strand, within AO356_16045at 3627.901 kb on + strand, within AO356_16045at 3627.902 kb on - strand, within AO356_16045at 3627.902 kb on - strand, within AO356_16045at 3627.902 kb on - strand, within AO356_16045at 3627.902 kb on - strand, within AO356_16045at 3628.031 kb on - strand, within AO356_16045at 3628.031 kb on - strand, within AO356_16045at 3628.031 kb on - strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.150 kb on + strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.151 kb on - strand, within AO356_16045at 3628.154 kb on + strand, within AO356_16045at 3628.154 kb on + strand, within AO356_16045at 3628.154 kb on + strand, within AO356_16045at 3628.155 kb on - strand, within AO356_16045at 3628.155 kb on - strand, within AO356_16045at 3628.155 kb on - strand, within AO356_16045at 3628.211 kb on - strand, within AO356_16045at 3628.222 kb on + strand, within AO356_16045at 3628.222 kb on + strand, within AO356_16045at 3628.222 kb on + strand, within AO356_16045at 3628.222 kb on + strand, within AO356_16045at 3628.222 kb on + strand, within AO356_16045at 3628.223 kb on - strand, within AO356_16045at 3628.223 kb on - strand, within AO356_16045at 3628.223 kb on - strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.384 kb on + strand, within AO356_16045at 3628.385 kb on - strand, within AO356_16045at 3628.648 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.676 kb on - strand, within AO356_16045at 3628.676 kb on - strand, within AO356_16045at 3628.760 kb on - strand, within AO356_16045at 3628.909 kb on + strandat 3628.909 kb on + strandat 3629.002 kb on + strandat 3629.002 kb on + strandat 3629.002 kb on + strandat 3629.003 kb on - strandat 3629.003 kb on - strandat 3629.003 kb on - strandat 3629.014 kb on + strandat 3629.014 kb on + strandat 3629.014 kb on + strandat 3629.015 kb on - strandat 3629.015 kb on - strandat 3629.095 kb on + strandat 3629.095 kb on + strandat 3629.095 kb on + strandat 3629.095 kb on + strandat 3629.096 kb on - strandat 3629.096 kb on - strandat 3629.119 kb on + strandat 3629.120 kb on - strandat 3629.135 kb on - strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.280 kb on + strandat 3629.281 kb on - strandat 3629.311 kb on - strandat 3629.311 kb on - strandat 3629.376 kb on + strandat 3629.472 kb on + strand, within AO356_16050at 3629.676 kb on + strand, within AO356_16050at 3629.776 kb on - strand, within AO356_16050at 3629.776 kb on - strand, within AO356_16050at 3629.916 kb on + strand, within AO356_16050at 3629.926 kb on - strand, within AO356_16050at 3629.967 kb on + strand, within AO356_16050at 3630.045 kb on + strand, within AO356_16050

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,626,270 + AO356_16040 0.29 +0.4
3,626,271 - AO356_16040 0.29 +0.3
3,626,294 + AO356_16040 0.32 -0.0
3,626,294 + AO356_16040 0.32 -0.5
3,626,294 + AO356_16040 0.32 +0.4
3,626,294 + AO356_16040 0.32 -0.6
3,626,294 + AO356_16040 0.32 -0.1
3,626,294 + AO356_16040 0.32 +0.6
3,626,294 + AO356_16040 0.32 +0.2
3,626,295 - AO356_16040 0.32 +0.6
3,626,295 - AO356_16040 0.32 +0.9
3,626,295 - AO356_16040 0.32 -0.0
3,626,295 - AO356_16040 0.32 +0.3
3,626,295 - AO356_16040 0.32 -0.1
3,626,363 + AO356_16040 0.38 +0.5
3,626,363 + AO356_16040 0.38 -0.8
3,626,363 + AO356_16040 0.38 +0.4
3,626,364 - AO356_16040 0.39 -0.7
3,626,510 + AO356_16040 0.53 -0.3
3,626,511 - AO356_16040 0.53 -0.1
3,626,684 + AO356_16040 0.70 -0.3
3,626,685 - AO356_16040 0.70 -0.6
3,626,685 - AO356_16040 0.70 -0.3
3,626,735 + AO356_16040 0.75 +0.1
3,626,735 + AO356_16040 0.75 -0.6
3,626,736 - AO356_16040 0.75 -0.3
3,627,032 + +1.0
3,627,032 + +1.2
3,627,032 + -0.2
3,627,254 + +0.8
3,627,255 - -1.8
3,627,415 + AO356_16045 0.14 +0.7
3,627,415 + AO356_16045 0.14 +0.2
3,627,415 + AO356_16045 0.14 -0.0
3,627,415 + AO356_16045 0.14 +0.1
3,627,415 + AO356_16045 0.14 -0.2
3,627,415 + AO356_16045 0.14 +0.1
3,627,415 + AO356_16045 0.14 -1.1
3,627,415 + AO356_16045 0.14 -0.9
3,627,416 - AO356_16045 0.14 -0.1
3,627,416 - AO356_16045 0.14 -0.4
3,627,416 - AO356_16045 0.14 +0.2
3,627,416 - AO356_16045 0.14 +0.7
3,627,416 - AO356_16045 0.14 -0.5
3,627,416 - AO356_16045 0.14 -0.0
3,627,416 - AO356_16045 0.14 +0.3
3,627,416 - AO356_16045 0.14 -0.0
3,627,416 - AO356_16045 0.14 +0.4
3,627,416 - AO356_16045 0.14 -0.2
3,627,416 - AO356_16045 0.14 +0.7
3,627,416 - AO356_16045 0.14 +0.2
3,627,416 - AO356_16045 0.14 +0.2
3,627,416 - AO356_16045 0.14 -0.2
3,627,416 - AO356_16045 0.14 -0.1
3,627,416 - AO356_16045 0.14 +0.3
3,627,416 - AO356_16045 0.14 +0.2
3,627,416 - AO356_16045 0.14 +1.0
3,627,416 - AO356_16045 0.14 -1.2
3,627,416 - AO356_16045 0.14 +0.6
3,627,416 - AO356_16045 0.14 -0.2
3,627,416 - AO356_16045 0.14 -0.5
3,627,416 - AO356_16045 0.14 +0.3
3,627,419 + AO356_16045 0.14 -0.1
3,627,419 + AO356_16045 0.14 +0.4
3,627,419 + AO356_16045 0.14 +0.6
3,627,419 + AO356_16045 0.14 -0.0
3,627,419 + AO356_16045 0.14 +0.7
3,627,420 - AO356_16045 0.14 +0.6
3,627,420 - AO356_16045 0.14 +0.3
3,627,420 - AO356_16045 0.14 +0.4
3,627,420 - AO356_16045 0.14 +0.0
3,627,420 - AO356_16045 0.14 -0.1
3,627,420 - AO356_16045 0.14 +0.3
3,627,420 - AO356_16045 0.14 +0.3
3,627,420 - AO356_16045 0.14 +0.2
3,627,420 - AO356_16045 0.14 -0.6
3,627,566 - AO356_16045 0.22 +0.5
3,627,607 + AO356_16045 0.24 -0.5
3,627,607 + AO356_16045 0.24 +0.4
3,627,607 + AO356_16045 0.24 -0.5
3,627,607 + AO356_16045 0.24 -0.2
3,627,607 + AO356_16045 0.24 -0.3
3,627,607 + AO356_16045 0.24 -1.1
3,627,607 + AO356_16045 0.24 -1.6
3,627,608 - AO356_16045 0.24 -0.1
3,627,608 - AO356_16045 0.24 +0.3
3,627,608 - AO356_16045 0.24 -0.7
3,627,608 - AO356_16045 0.24 -0.9
3,627,611 - AO356_16045 0.24 +0.4
3,627,611 - AO356_16045 0.24 -0.8
3,627,631 + AO356_16045 0.25 +0.7
3,627,631 + AO356_16045 0.25 +0.6
3,627,631 + AO356_16045 0.25 -0.2
3,627,631 + AO356_16045 0.25 +0.4
3,627,631 + AO356_16045 0.25 +0.3
3,627,632 - AO356_16045 0.25 -0.1
3,627,632 - AO356_16045 0.25 +0.2
3,627,632 - AO356_16045 0.25 -0.6
3,627,632 - AO356_16045 0.25 +0.3
3,627,661 + AO356_16045 0.27 -0.9
3,627,661 + AO356_16045 0.27 +0.6
3,627,705 + AO356_16045 0.29 -1.9
3,627,705 + AO356_16045 0.29 -0.6
3,627,705 + AO356_16045 0.29 +0.2
3,627,705 + AO356_16045 0.29 -0.2
3,627,706 - AO356_16045 0.29 +0.7
3,627,706 - AO356_16045 0.29 +0.5
3,627,762 + AO356_16045 0.32 +1.1
3,627,762 + AO356_16045 0.32 -0.0
3,627,762 + AO356_16045 0.32 -0.8
3,627,763 - AO356_16045 0.32 +0.5
3,627,763 - AO356_16045 0.32 -0.3
3,627,901 + AO356_16045 0.39 -1.0
3,627,901 + AO356_16045 0.39 -1.4
3,627,901 + AO356_16045 0.39 +0.0
3,627,902 - AO356_16045 0.39 +0.5
3,627,902 - AO356_16045 0.39 -0.2
3,627,902 - AO356_16045 0.39 -0.9
3,627,902 - AO356_16045 0.39 -0.3
3,628,031 - AO356_16045 0.46 +0.9
3,628,031 - AO356_16045 0.46 +1.4
3,628,031 - AO356_16045 0.46 +0.6
3,628,150 + AO356_16045 0.52 +0.1
3,628,150 + AO356_16045 0.52 +0.4
3,628,150 + AO356_16045 0.52 +0.5
3,628,150 + AO356_16045 0.52 +0.3
3,628,150 + AO356_16045 0.52 -1.8
3,628,150 + AO356_16045 0.52 +1.2
3,628,150 + AO356_16045 0.52 -0.1
3,628,150 + AO356_16045 0.52 -0.6
3,628,150 + AO356_16045 0.52 +0.5
3,628,150 + AO356_16045 0.52 -0.0
3,628,150 + AO356_16045 0.52 +1.0
3,628,150 + AO356_16045 0.52 +0.4
3,628,150 + AO356_16045 0.52 +0.9
3,628,150 + AO356_16045 0.52 -0.9
3,628,150 + AO356_16045 0.52 +0.1
3,628,150 + AO356_16045 0.52 +0.3
3,628,150 + AO356_16045 0.52 -0.1
3,628,150 + AO356_16045 0.52 +2.2
3,628,150 + AO356_16045 0.52 +0.2
3,628,151 - AO356_16045 0.52 +0.4
3,628,151 - AO356_16045 0.52 -1.5
3,628,151 - AO356_16045 0.52 +0.4
3,628,151 - AO356_16045 0.52 -0.1
3,628,151 - AO356_16045 0.52 +0.7
3,628,151 - AO356_16045 0.52 -0.7
3,628,151 - AO356_16045 0.52 -0.3
3,628,151 - AO356_16045 0.52 +0.4
3,628,151 - AO356_16045 0.52 -0.4
3,628,151 - AO356_16045 0.52 +0.8
3,628,151 - AO356_16045 0.52 +1.0
3,628,154 + AO356_16045 0.52 +0.6
3,628,154 + AO356_16045 0.52 -0.2
3,628,154 + AO356_16045 0.52 +0.5
3,628,155 - AO356_16045 0.52 +0.0
3,628,155 - AO356_16045 0.52 +0.6
3,628,155 - AO356_16045 0.52 -1.0
3,628,211 - AO356_16045 0.55 -0.1
3,628,222 + AO356_16045 0.55 +0.5
3,628,222 + AO356_16045 0.55 +0.6
3,628,222 + AO356_16045 0.55 -0.2
3,628,222 + AO356_16045 0.55 -0.2
3,628,222 + AO356_16045 0.55 +0.6
3,628,223 - AO356_16045 0.56 +0.7
3,628,223 - AO356_16045 0.56 -0.0
3,628,223 - AO356_16045 0.56 +0.2
3,628,306 + AO356_16045 0.60 -0.7
3,628,306 + AO356_16045 0.60 +0.3
3,628,306 + AO356_16045 0.60 +0.1
3,628,306 + AO356_16045 0.60 +1.4
3,628,306 + AO356_16045 0.60 -0.1
3,628,306 + AO356_16045 0.60 -1.3
3,628,306 + AO356_16045 0.60 +0.2
3,628,307 - AO356_16045 0.60 +0.2
3,628,307 - AO356_16045 0.60 +0.8
3,628,307 - AO356_16045 0.60 -0.1
3,628,307 - AO356_16045 0.60 -0.5
3,628,307 - AO356_16045 0.60 -0.5
3,628,307 - AO356_16045 0.60 -0.1
3,628,307 - AO356_16045 0.60 -0.0
3,628,384 + AO356_16045 0.64 -0.9
3,628,385 - AO356_16045 0.64 +0.1
3,628,648 + AO356_16045 0.77 +0.4
3,628,675 + AO356_16045 0.79 -0.2
3,628,675 + AO356_16045 0.79 -0.3
3,628,675 + AO356_16045 0.79 -0.3
3,628,675 + AO356_16045 0.79 -1.2
3,628,675 + AO356_16045 0.79 +0.1
3,628,675 + AO356_16045 0.79 -1.8
3,628,676 - AO356_16045 0.79 -0.1
3,628,676 - AO356_16045 0.79 +0.1
3,628,760 - AO356_16045 0.83 +0.3
3,628,909 + -0.9
3,628,909 + -2.1
3,629,002 + -2.9
3,629,002 + -2.4
3,629,002 + -0.3
3,629,003 - -0.5
3,629,003 - +0.5
3,629,003 - -1.6
3,629,014 + -0.8
3,629,014 + -1.2
3,629,014 + -0.9
3,629,015 - -0.3
3,629,015 - -0.4
3,629,095 + -0.5
3,629,095 + -1.9
3,629,095 + -3.2
3,629,095 + -1.8
3,629,096 - -0.6
3,629,096 - +0.6
3,629,119 + +0.4
3,629,120 - -0.3
3,629,135 - +0.4
3,629,264 + -2.9
3,629,264 + -2.2
3,629,264 + -0.0
3,629,264 + -1.5
3,629,264 + -1.4
3,629,264 + -2.5
3,629,264 + -1.7
3,629,280 + -1.8
3,629,281 - -1.6
3,629,311 - -1.8
3,629,311 - -0.0
3,629,376 + -1.2
3,629,472 + AO356_16050 0.11 -1.0
3,629,676 + AO356_16050 0.23 -2.1
3,629,776 - AO356_16050 0.29 -0.6
3,629,776 - AO356_16050 0.29 -0.0
3,629,916 + AO356_16050 0.38 -0.6
3,629,926 - AO356_16050 0.38 -2.2
3,629,967 + AO356_16050 0.41 -1.3
3,630,045 + AO356_16050 0.46 -2.3

Or see this region's nucleotide sequence