Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14415

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14405 and AO356_14410 are separated by 78 nucleotidesAO356_14410 and AO356_14415 overlap by 4 nucleotidesAO356_14415 and AO356_14420 are separated by 70 nucleotides AO356_14405: AO356_14405 - alcohol dehydrogenase, at 3,277,192 to 3,278,340 _14405 AO356_14410: AO356_14410 - ribulose phosphate epimerase, at 3,278,419 to 3,279,093 _14410 AO356_14415: AO356_14415 - phosphoglycolate phosphatase, at 3,279,090 to 3,279,908 _14415 AO356_14420: AO356_14420 - anthranilate synthase, at 3,279,979 to 3,281,460 _14420 Position (kb) 3279 3280Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3278.208 kb on + strand, within AO356_14405at 3278.209 kb on - strand, within AO356_14405at 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.376 kb on - strandat 3278.376 kb on - strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.201 kb on - strand, within AO356_14415at 3279.366 kb on + strand, within AO356_14415at 3279.366 kb on + strand, within AO356_14415at 3279.406 kb on + strand, within AO356_14415at 3279.407 kb on - strand, within AO356_14415at 3279.517 kb on - strand, within AO356_14415at 3279.700 kb on - strand, within AO356_14415at 3279.700 kb on - strand, within AO356_14415at 3279.700 kb on - strand, within AO356_14415at 3279.763 kb on + strand, within AO356_14415at 3279.763 kb on + strand, within AO356_14415at 3279.763 kb on + strand, within AO356_14415at 3279.796 kb on + strand, within AO356_14415at 3279.796 kb on + strand, within AO356_14415at 3279.796 kb on + strand, within AO356_14415at 3279.796 kb on + strand, within AO356_14415at 3279.797 kb on - strand, within AO356_14415at 3279.797 kb on - strand, within AO356_14415at 3279.797 kb on - strand, within AO356_14415at 3279.797 kb on - strand, within AO356_14415at 3279.942 kb on + strandat 3279.943 kb on - strandat 3279.943 kb on - strandat 3279.943 kb on - strandat 3279.943 kb on - strandat 3280.018 kb on + strandat 3280.019 kb on - strandat 3280.078 kb on + strandat 3280.108 kb on + strandat 3280.108 kb on + strandat 3280.150 kb on + strand, within AO356_14420at 3280.150 kb on + strand, within AO356_14420at 3280.288 kb on + strand, within AO356_14420at 3280.289 kb on - strand, within AO356_14420at 3280.342 kb on + strand, within AO356_14420at 3280.366 kb on + strand, within AO356_14420at 3280.367 kb on - strand, within AO356_14420at 3280.519 kb on + strand, within AO356_14420at 3280.520 kb on - strand, within AO356_14420at 3280.520 kb on - strand, within AO356_14420at 3280.654 kb on + strand, within AO356_14420at 3280.684 kb on + strand, within AO356_14420at 3280.684 kb on + strand, within AO356_14420at 3280.684 kb on + strand, within AO356_14420at 3280.684 kb on + strand, within AO356_14420at 3280.684 kb on + strand, within AO356_14420at 3280.684 kb on + strand, within AO356_14420at 3280.685 kb on - strand, within AO356_14420at 3280.685 kb on - strand, within AO356_14420at 3280.685 kb on - strand, within AO356_14420at 3280.685 kb on - strand, within AO356_14420at 3280.685 kb on - strand, within AO356_14420at 3280.685 kb on - strand, within AO356_14420at 3280.685 kb on - strand, within AO356_14420at 3280.766 kb on - strand, within AO356_14420at 3280.798 kb on + strand, within AO356_14420at 3280.798 kb on + strand, within AO356_14420at 3280.798 kb on + strand, within AO356_14420at 3280.798 kb on + strand, within AO356_14420at 3280.798 kb on + strand, within AO356_14420at 3280.798 kb on + strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.799 kb on - strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.804 kb on + strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420at 3280.805 kb on - strand, within AO356_14420

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,278,208 + AO356_14405 0.88 -0.7
3,278,209 - AO356_14405 0.89 -1.4
3,278,375 + +0.6
3,278,375 + +0.2
3,278,375 + -1.0
3,278,375 + +0.2
3,278,375 + +0.2
3,278,375 + -0.7
3,278,375 + -0.7
3,278,375 + -0.1
3,278,376 - -0.8
3,278,376 - +0.6
3,278,377 + +0.9
3,278,377 + +0.3
3,278,377 + +0.4
3,278,377 + +0.1
3,278,377 + +0.2
3,278,377 + -0.3
3,278,377 + +1.8
3,278,377 + +0.3
3,278,377 + -0.5
3,278,378 - +0.5
3,278,378 - -1.8
3,278,378 - +0.1
3,278,378 - -0.0
3,278,378 - -0.3
3,278,378 - +0.1
3,278,378 - +0.4
3,278,378 - -1.0
3,278,378 - +1.6
3,278,378 - +0.8
3,279,200 + AO356_14415 0.13 +1.5
3,279,200 + AO356_14415 0.13 -0.6
3,279,200 + AO356_14415 0.13 -2.6
3,279,200 + AO356_14415 0.13 +0.2
3,279,200 + AO356_14415 0.13 -0.6
3,279,200 + AO356_14415 0.13 +0.0
3,279,200 + AO356_14415 0.13 -0.0
3,279,201 - AO356_14415 0.14 -0.1
3,279,366 + AO356_14415 0.34 +0.1
3,279,366 + AO356_14415 0.34 -0.5
3,279,406 + AO356_14415 0.39 -0.6
3,279,407 - AO356_14415 0.39 -0.5
3,279,517 - AO356_14415 0.52 -0.5
3,279,700 - AO356_14415 0.74 -0.9
3,279,700 - AO356_14415 0.74 +0.2
3,279,700 - AO356_14415 0.74 +1.3
3,279,763 + AO356_14415 0.82 +0.0
3,279,763 + AO356_14415 0.82 +0.8
3,279,763 + AO356_14415 0.82 -0.1
3,279,796 + AO356_14415 0.86 +0.1
3,279,796 + AO356_14415 0.86 +0.7
3,279,796 + AO356_14415 0.86 +0.2
3,279,796 + AO356_14415 0.86 -1.2
3,279,797 - AO356_14415 0.86 -2.2
3,279,797 - AO356_14415 0.86 -1.3
3,279,797 - AO356_14415 0.86 -1.1
3,279,797 - AO356_14415 0.86 -1.0
3,279,942 + -1.3
3,279,943 - -2.4
3,279,943 - -2.1
3,279,943 - -2.7
3,279,943 - -3.3
3,280,018 + -3.5
3,280,019 - -3.5
3,280,078 + -3.3
3,280,108 + -2.8
3,280,108 + -1.2
3,280,150 + AO356_14420 0.12 -1.3
3,280,150 + AO356_14420 0.12 -1.5
3,280,288 + AO356_14420 0.21 -4.5
3,280,289 - AO356_14420 0.21 -3.9
3,280,342 + AO356_14420 0.24 -1.8
3,280,366 + AO356_14420 0.26 -2.1
3,280,367 - AO356_14420 0.26 -3.4
3,280,519 + AO356_14420 0.36 -3.7
3,280,520 - AO356_14420 0.37 -2.3
3,280,520 - AO356_14420 0.37 -3.4
3,280,654 + AO356_14420 0.46 -1.7
3,280,684 + AO356_14420 0.48 -2.0
3,280,684 + AO356_14420 0.48 -0.5
3,280,684 + AO356_14420 0.48 -1.0
3,280,684 + AO356_14420 0.48 -2.3
3,280,684 + AO356_14420 0.48 -2.0
3,280,684 + AO356_14420 0.48 -1.0
3,280,685 - AO356_14420 0.48 -2.8
3,280,685 - AO356_14420 0.48 -3.4
3,280,685 - AO356_14420 0.48 -4.1
3,280,685 - AO356_14420 0.48 -2.3
3,280,685 - AO356_14420 0.48 -3.3
3,280,685 - AO356_14420 0.48 -2.3
3,280,685 - AO356_14420 0.48 -2.7
3,280,766 - AO356_14420 0.53 -3.6
3,280,798 + AO356_14420 0.55 -3.0
3,280,798 + AO356_14420 0.55 -3.2
3,280,798 + AO356_14420 0.55 -2.0
3,280,798 + AO356_14420 0.55 -0.7
3,280,798 + AO356_14420 0.55 -3.4
3,280,798 + AO356_14420 0.55 -2.9
3,280,799 - AO356_14420 0.55 -2.3
3,280,799 - AO356_14420 0.55 -1.2
3,280,799 - AO356_14420 0.55 -2.7
3,280,799 - AO356_14420 0.55 -2.5
3,280,799 - AO356_14420 0.55 -2.4
3,280,799 - AO356_14420 0.55 -2.5
3,280,799 - AO356_14420 0.55 -3.2
3,280,799 - AO356_14420 0.55 -2.8
3,280,799 - AO356_14420 0.55 -1.7
3,280,799 - AO356_14420 0.55 -1.8
3,280,799 - AO356_14420 0.55 -2.0
3,280,804 + AO356_14420 0.56 -2.5
3,280,804 + AO356_14420 0.56 -3.7
3,280,804 + AO356_14420 0.56 -2.8
3,280,804 + AO356_14420 0.56 -3.1
3,280,804 + AO356_14420 0.56 -1.6
3,280,804 + AO356_14420 0.56 -3.2
3,280,804 + AO356_14420 0.56 -2.8
3,280,804 + AO356_14420 0.56 -3.0
3,280,804 + AO356_14420 0.56 -3.2
3,280,804 + AO356_14420 0.56 -2.8
3,280,804 + AO356_14420 0.56 -2.7
3,280,804 + AO356_14420 0.56 -3.2
3,280,805 - AO356_14420 0.56 -0.4
3,280,805 - AO356_14420 0.56 -3.7
3,280,805 - AO356_14420 0.56 -2.2
3,280,805 - AO356_14420 0.56 -2.3
3,280,805 - AO356_14420 0.56 -3.2
3,280,805 - AO356_14420 0.56 -3.1
3,280,805 - AO356_14420 0.56 -3.2
3,280,805 - AO356_14420 0.56 -3.4
3,280,805 - AO356_14420 0.56 -2.5
3,280,805 - AO356_14420 0.56 -3.4
3,280,805 - AO356_14420 0.56 -0.5
3,280,805 - AO356_14420 0.56 -3.3
3,280,805 - AO356_14420 0.56 -2.6
3,280,805 - AO356_14420 0.56 -3.0
3,280,805 - AO356_14420 0.56 -1.8

Or see this region's nucleotide sequence