Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13695

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13690 and AO356_13695 are separated by 31 nucleotidesAO356_13695 and AO356_13700 are separated by 56 nucleotidesAO356_13700 and AO356_13705 are separated by 274 nucleotides AO356_13690: AO356_13690 - phosphoglycerate kinase, at 3,105,461 to 3,106,624 _13690 AO356_13695: AO356_13695 - hypothetical protein, at 3,106,656 to 3,106,880 _13695 AO356_13700: AO356_13700 - hypothetical protein, at 3,106,937 to 3,107,272 _13700 AO356_13705: AO356_13705 - fructose-1,6-bisphosphate aldolase, at 3,107,547 to 3,108,611 _13705 Position (kb) 3106 3107Strain fitness (log2 ratio) -3 -2 -1 0 1at 3106.767 kb on + strand, within AO356_13695at 3106.839 kb on + strand, within AO356_13695at 3106.839 kb on + strand, within AO356_13695at 3106.839 kb on + strand, within AO356_13695at 3106.839 kb on + strand, within AO356_13695at 3106.839 kb on + strand, within AO356_13695at 3106.839 kb on + strand, within AO356_13695at 3106.840 kb on - strand, within AO356_13695at 3106.840 kb on - strand, within AO356_13695at 3106.840 kb on - strand, within AO356_13695at 3106.840 kb on - strand, within AO356_13695at 3106.894 kb on + strandat 3106.894 kb on + strandat 3106.894 kb on + strandat 3106.894 kb on + strandat 3106.895 kb on - strandat 3106.895 kb on - strandat 3106.895 kb on - strandat 3106.895 kb on - strandat 3107.106 kb on + strand, within AO356_13700at 3107.106 kb on + strand, within AO356_13700at 3107.106 kb on + strand, within AO356_13700at 3107.107 kb on - strand, within AO356_13700at 3107.107 kb on - strand, within AO356_13700at 3107.107 kb on - strand, within AO356_13700at 3107.125 kb on + strand, within AO356_13700at 3107.171 kb on + strand, within AO356_13700at 3107.171 kb on + strand, within AO356_13700at 3107.171 kb on + strand, within AO356_13700at 3107.172 kb on - strand, within AO356_13700at 3107.222 kb on + strand, within AO356_13700at 3107.222 kb on + strand, within AO356_13700at 3107.270 kb on + strandat 3107.270 kb on + strandat 3107.270 kb on + strandat 3107.270 kb on + strandat 3107.274 kb on - strandat 3107.351 kb on + strandat 3107.376 kb on + strandat 3107.376 kb on + strandat 3107.423 kb on + strandat 3107.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,106,767 + AO356_13695 0.49 -0.8
3,106,839 + AO356_13695 0.81 -1.4
3,106,839 + AO356_13695 0.81 -2.6
3,106,839 + AO356_13695 0.81 -1.6
3,106,839 + AO356_13695 0.81 -1.8
3,106,839 + AO356_13695 0.81 -1.2
3,106,839 + AO356_13695 0.81 -0.4
3,106,840 - AO356_13695 0.82 -0.2
3,106,840 - AO356_13695 0.82 -1.0
3,106,840 - AO356_13695 0.82 +0.5
3,106,840 - AO356_13695 0.82 +0.7
3,106,894 + -2.0
3,106,894 + +0.9
3,106,894 + -1.2
3,106,894 + -0.1
3,106,895 - +1.0
3,106,895 - -0.4
3,106,895 - +0.3
3,106,895 - +0.4
3,107,106 + AO356_13700 0.50 -1.5
3,107,106 + AO356_13700 0.50 -0.6
3,107,106 + AO356_13700 0.50 -0.7
3,107,107 - AO356_13700 0.51 +0.3
3,107,107 - AO356_13700 0.51 +0.8
3,107,107 - AO356_13700 0.51 -0.4
3,107,125 + AO356_13700 0.56 -2.7
3,107,171 + AO356_13700 0.70 -1.3
3,107,171 + AO356_13700 0.70 -2.0
3,107,171 + AO356_13700 0.70 -0.1
3,107,172 - AO356_13700 0.70 +0.2
3,107,222 + AO356_13700 0.85 -3.3
3,107,222 + AO356_13700 0.85 -1.1
3,107,270 + -1.2
3,107,270 + -0.4
3,107,270 + -2.0
3,107,270 + -1.8
3,107,274 - +0.9
3,107,351 + -0.7
3,107,376 + -0.2
3,107,376 + -0.2
3,107,423 + -0.7
3,107,423 + -2.0

Or see this region's nucleotide sequence