Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08290

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08285 and AO356_08290 are separated by 469 nucleotidesAO356_08290 and AO356_08295 overlap by 8 nucleotides AO356_08285: AO356_08285 - Zeta toxin, at 1,864,272 to 1,865,177 _08285 AO356_08290: AO356_08290 - precorrin-6Y C5,15-methyltransferase, at 1,865,647 to 1,866,858 _08290 AO356_08295: AO356_08295 - cobalt-precorrin-6A synthase, at 1,866,851 to 1,867,948 _08295 Position (kb) 1865 1866 1867Strain fitness (log2 ratio) -2 -1 0 1at 1864.746 kb on - strand, within AO356_08285at 1864.814 kb on + strand, within AO356_08285at 1864.896 kb on + strand, within AO356_08285at 1864.896 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.953 kb on - strand, within AO356_08285at 1864.970 kb on + strand, within AO356_08285at 1864.970 kb on + strand, within AO356_08285at 1865.001 kb on + strand, within AO356_08285at 1865.001 kb on + strand, within AO356_08285at 1865.001 kb on + strand, within AO356_08285at 1865.001 kb on + strand, within AO356_08285at 1865.001 kb on + strand, within AO356_08285at 1865.001 kb on + strand, within AO356_08285at 1865.001 kb on + strand, within AO356_08285at 1865.001 kb on + strand, within AO356_08285at 1865.002 kb on - strand, within AO356_08285at 1865.002 kb on - strand, within AO356_08285at 1865.002 kb on - strand, within AO356_08285at 1865.002 kb on - strand, within AO356_08285at 1865.002 kb on - strand, within AO356_08285at 1865.002 kb on - strand, within AO356_08285at 1865.002 kb on - strand, within AO356_08285at 1865.045 kb on + strand, within AO356_08285at 1865.046 kb on - strand, within AO356_08285at 1865.093 kb on + strandat 1865.093 kb on + strandat 1865.093 kb on + strandat 1865.093 kb on + strandat 1865.094 kb on - strandat 1865.094 kb on - strandat 1865.094 kb on - strandat 1865.105 kb on + strandat 1865.105 kb on + strandat 1865.106 kb on - strandat 1865.145 kb on + strandat 1865.145 kb on + strandat 1865.146 kb on - strandat 1865.146 kb on - strandat 1865.146 kb on - strandat 1865.151 kb on + strandat 1865.151 kb on + strandat 1865.151 kb on + strandat 1865.151 kb on + strandat 1865.151 kb on + strandat 1865.151 kb on + strandat 1865.152 kb on - strandat 1865.152 kb on - strandat 1865.152 kb on - strandat 1865.152 kb on - strandat 1865.152 kb on - strandat 1865.152 kb on - strandat 1865.152 kb on - strandat 1865.153 kb on + strandat 1865.153 kb on + strandat 1865.154 kb on - strandat 1865.154 kb on - strandat 1865.154 kb on - strandat 1865.159 kb on + strandat 1865.159 kb on + strandat 1865.159 kb on + strandat 1865.159 kb on + strandat 1865.159 kb on + strandat 1865.160 kb on - strandat 1865.160 kb on - strandat 1865.160 kb on - strandat 1865.160 kb on - strandat 1865.160 kb on - strandat 1865.160 kb on - strandat 1865.160 kb on - strandat 1865.160 kb on - strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.163 kb on + strandat 1865.164 kb on + strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.164 kb on - strandat 1865.229 kb on - strandat 1865.229 kb on - strandat 1865.229 kb on - strandat 1865.233 kb on - strandat 1865.233 kb on - strandat 1865.233 kb on - strandat 1865.233 kb on - strandat 1865.233 kb on - strandat 1865.233 kb on - strandat 1865.254 kb on + strandat 1865.300 kb on + strandat 1865.344 kb on + strandat 1865.345 kb on - strandat 1865.414 kb on + strandat 1865.414 kb on + strandat 1865.415 kb on - strandat 1865.415 kb on - strandat 1865.415 kb on - strandat 1865.415 kb on - strandat 1865.420 kb on + strandat 1865.420 kb on + strandat 1865.420 kb on + strandat 1865.420 kb on + strandat 1865.421 kb on - strandat 1865.421 kb on - strandat 1865.421 kb on - strandat 1865.582 kb on + strandat 1865.582 kb on + strandat 1865.583 kb on - strandat 1865.583 kb on - strandat 1865.583 kb on - strandat 1865.618 kb on + strandat 1865.619 kb on - strandat 1865.666 kb on + strandat 1865.781 kb on + strand, within AO356_08290at 1865.888 kb on - strand, within AO356_08290at 1866.039 kb on - strand, within AO356_08290at 1866.054 kb on - strand, within AO356_08290at 1866.752 kb on + strandat 1866.752 kb on + strandat 1866.753 kb on - strandat 1866.822 kb on + strandat 1866.823 kb on - strandat 1866.984 kb on + strand, within AO356_08295at 1866.984 kb on + strand, within AO356_08295at 1866.985 kb on - strand, within AO356_08295at 1867.167 kb on + strand, within AO356_08295at 1867.235 kb on - strand, within AO356_08295at 1867.425 kb on - strand, within AO356_08295at 1867.529 kb on + strand, within AO356_08295at 1867.530 kb on - strand, within AO356_08295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,864,746 - AO356_08285 0.52 +1.2
1,864,814 + AO356_08285 0.60 +0.2
1,864,896 + AO356_08285 0.69 -1.0
1,864,896 + AO356_08285 0.69 +0.8
1,864,950 + AO356_08285 0.75 +0.3
1,864,950 + AO356_08285 0.75 -0.2
1,864,950 + AO356_08285 0.75 -2.5
1,864,950 + AO356_08285 0.75 +0.1
1,864,950 + AO356_08285 0.75 +0.3
1,864,950 + AO356_08285 0.75 +1.2
1,864,950 + AO356_08285 0.75 +0.1
1,864,950 + AO356_08285 0.75 +0.4
1,864,950 + AO356_08285 0.75 -0.9
1,864,950 + AO356_08285 0.75 -0.4
1,864,951 - AO356_08285 0.75 -0.8
1,864,951 - AO356_08285 0.75 +0.1
1,864,951 - AO356_08285 0.75 -0.8
1,864,951 - AO356_08285 0.75 -0.3
1,864,951 - AO356_08285 0.75 +0.5
1,864,951 - AO356_08285 0.75 +0.4
1,864,951 - AO356_08285 0.75 +0.4
1,864,953 - AO356_08285 0.75 +0.8
1,864,970 + AO356_08285 0.77 +0.3
1,864,970 + AO356_08285 0.77 +0.1
1,865,001 + AO356_08285 0.80 -1.1
1,865,001 + AO356_08285 0.80 +0.3
1,865,001 + AO356_08285 0.80 -0.1
1,865,001 + AO356_08285 0.80 +0.3
1,865,001 + AO356_08285 0.80 +1.3
1,865,001 + AO356_08285 0.80 +1.1
1,865,001 + AO356_08285 0.80 +0.1
1,865,001 + AO356_08285 0.80 +0.2
1,865,002 - AO356_08285 0.81 +0.2
1,865,002 - AO356_08285 0.81 +0.9
1,865,002 - AO356_08285 0.81 +0.5
1,865,002 - AO356_08285 0.81 +0.2
1,865,002 - AO356_08285 0.81 +0.0
1,865,002 - AO356_08285 0.81 +1.4
1,865,002 - AO356_08285 0.81 +0.8
1,865,045 + AO356_08285 0.85 -0.7
1,865,046 - AO356_08285 0.85 -0.5
1,865,093 + +1.1
1,865,093 + +0.2
1,865,093 + -0.3
1,865,093 + -0.4
1,865,094 - +0.3
1,865,094 - +0.8
1,865,094 - +0.6
1,865,105 + +0.4
1,865,105 + +0.5
1,865,106 - +0.4
1,865,145 + +0.4
1,865,145 + +1.4
1,865,146 - +0.3
1,865,146 - +0.7
1,865,146 - +0.1
1,865,151 + -0.0
1,865,151 + +0.7
1,865,151 + +0.5
1,865,151 + -1.1
1,865,151 + +0.1
1,865,151 + -0.4
1,865,152 - +0.1
1,865,152 - +0.0
1,865,152 - +0.2
1,865,152 - -0.1
1,865,152 - +0.7
1,865,152 - +0.3
1,865,152 - +0.2
1,865,153 + -0.0
1,865,153 + +0.4
1,865,154 - -0.4
1,865,154 - +0.1
1,865,154 - +0.9
1,865,159 + +0.3
1,865,159 + +0.2
1,865,159 + -0.6
1,865,159 + -0.1
1,865,159 + +0.3
1,865,160 - +0.1
1,865,160 - -0.4
1,865,160 - +0.2
1,865,160 - -0.2
1,865,160 - +1.1
1,865,160 - -0.3
1,865,160 - +0.7
1,865,160 - -1.3
1,865,163 + +0.8
1,865,163 + -0.6
1,865,163 + +0.2
1,865,163 + +0.1
1,865,163 + +0.3
1,865,163 + +0.5
1,865,163 + +0.2
1,865,163 + -0.2
1,865,163 + +0.2
1,865,163 + -0.8
1,865,163 + -0.3
1,865,163 + +0.3
1,865,164 + +0.4
1,865,164 - +1.1
1,865,164 - +0.5
1,865,164 - -0.3
1,865,164 - -0.4
1,865,164 - +0.4
1,865,164 - -0.7
1,865,164 - +1.1
1,865,164 - -0.8
1,865,164 - +0.3
1,865,164 - +1.0
1,865,164 - +0.3
1,865,164 - -0.3
1,865,164 - -0.1
1,865,164 - +0.4
1,865,229 - +0.8
1,865,229 - -0.6
1,865,229 - -0.9
1,865,233 - +1.2
1,865,233 - +0.7
1,865,233 - -0.9
1,865,233 - -0.1
1,865,233 - +1.3
1,865,233 - +0.0
1,865,254 + -0.4
1,865,300 + -0.6
1,865,344 + -0.3
1,865,345 - -0.4
1,865,414 + +0.6
1,865,414 + +0.9
1,865,415 - -0.4
1,865,415 - -0.1
1,865,415 - +0.6
1,865,415 - -0.9
1,865,420 + +0.3
1,865,420 + +0.1
1,865,420 + +0.7
1,865,420 + -0.4
1,865,421 - +0.3
1,865,421 - +0.0
1,865,421 - -0.2
1,865,582 + -0.1
1,865,582 + +1.1
1,865,583 - -0.0
1,865,583 - +0.7
1,865,583 - +0.8
1,865,618 + -0.1
1,865,619 - +0.5
1,865,666 + -0.6
1,865,781 + AO356_08290 0.11 -1.0
1,865,888 - AO356_08290 0.20 -0.4
1,866,039 - AO356_08290 0.32 +0.2
1,866,054 - AO356_08290 0.34 -1.0
1,866,752 + -1.0
1,866,752 + -0.9
1,866,753 - -1.6
1,866,822 + -0.3
1,866,823 - +0.3
1,866,984 + AO356_08295 0.12 +0.4
1,866,984 + AO356_08295 0.12 +0.3
1,866,985 - AO356_08295 0.12 +0.5
1,867,167 + AO356_08295 0.29 -0.4
1,867,235 - AO356_08295 0.35 -0.1
1,867,425 - AO356_08295 0.52 -0.1
1,867,529 + AO356_08295 0.62 +1.5
1,867,530 - AO356_08295 0.62 +0.5

Or see this region's nucleotide sequence