Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02020 and AO356_02025 overlap by 6 nucleotides AO356_02025 and AO356_02030 are separated by 478 nucleotides AO356_02030 and AO356_02035 overlap by 4 nucleotides AO356_02035 and AO356_02040 overlap by 4 nucleotides
AO356_02020: AO356_02020 - phage tail protein, at 443,885 to 444,349
_02020
AO356_02025: AO356_02025 - hypothetical protein, at 444,344 to 444,790
_02025
AO356_02030: AO356_02030 - baseplate assembly protein, at 445,269 to 445,841
_02030
AO356_02035: AO356_02035 - baseplate assembly protein, at 445,838 to 446,182
_02035
AO356_02040: AO356_02040 - baseplate assembly protein, at 446,179 to 447,090
_02040
Position (kb) 445
446 Strain fitness (log2 ratio) -2
-1
0
1 at 444.277 kb on - strand, within AO356_02020 at 444.277 kb on - strand, within AO356_02020 at 444.277 kb on - strand, within AO356_02020 at 444.301 kb on - strand, within AO356_02020 at 444.358 kb on + strand at 444.405 kb on + strand, within AO356_02025 at 444.669 kb on - strand, within AO356_02025 at 444.724 kb on - strand, within AO356_02025 at 444.734 kb on - strand, within AO356_02025 at 444.749 kb on - strand at 444.869 kb on + strand at 444.965 kb on - strand at 445.112 kb on + strand at 445.113 kb on - strand at 445.137 kb on + strand at 445.218 kb on + strand at 445.218 kb on + strand at 445.218 kb on + strand at 445.280 kb on - strand at 445.569 kb on + strand, within AO356_02030 at 445.704 kb on + strand, within AO356_02030 at 445.705 kb on - strand, within AO356_02030 at 445.705 kb on - strand, within AO356_02030 at 445.944 kb on - strand, within AO356_02035 at 446.231 kb on + strand at 446.232 kb on - strand at 446.232 kb on - strand at 446.246 kb on - strand at 446.275 kb on + strand, within AO356_02040 at 446.275 kb on + strand, within AO356_02040 at 446.275 kb on + strand, within AO356_02040 at 446.276 kb on - strand, within AO356_02040 at 446.613 kb on + strand, within AO356_02040 at 446.613 kb on + strand, within AO356_02040 at 446.613 kb on + strand, within AO356_02040 at 446.614 kb on - strand, within AO356_02040 at 446.614 kb on - strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.762 kb on - strand, within AO356_02040 at 446.830 kb on + strand, within AO356_02040 at 446.830 kb on + strand, within AO356_02040 at 446.831 kb on - strand, within AO356_02040
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 444,277 - AO356_02020 0.84 -1.1 444,277 - AO356_02020 0.84 +0.5 444,277 - AO356_02020 0.84 -1.7 444,301 - AO356_02020 0.89 +0.3 444,358 + -0.4 444,405 + AO356_02025 0.14 -2.7 444,669 - AO356_02025 0.73 +0.2 444,724 - AO356_02025 0.85 -0.3 444,734 - AO356_02025 0.87 -1.2 444,749 - +0.1 444,869 + -0.1 444,965 - -0.4 445,112 + +0.6 445,113 - +0.9 445,137 + -0.1 445,218 + -1.7 445,218 + +0.3 445,218 + +0.5 445,280 - +0.3 445,569 + AO356_02030 0.52 +0.1 445,704 + AO356_02030 0.76 +0.2 445,705 - AO356_02030 0.76 +0.4 445,705 - AO356_02030 0.76 +0.9 445,944 - AO356_02035 0.31 -0.7 446,231 + -0.6 446,232 - +0.3 446,232 - -0.8 446,246 - -0.1 446,275 + AO356_02040 0.11 -0.1 446,275 + AO356_02040 0.11 +0.0 446,275 + AO356_02040 0.11 -0.8 446,276 - AO356_02040 0.11 +0.3 446,613 + AO356_02040 0.48 +0.8 446,613 + AO356_02040 0.48 +0.1 446,613 + AO356_02040 0.48 +0.1 446,614 - AO356_02040 0.48 -1.3 446,614 - AO356_02040 0.48 -0.3 446,617 + AO356_02040 0.48 +0.8 446,617 + AO356_02040 0.48 -0.6 446,617 + AO356_02040 0.48 +0.7 446,617 + AO356_02040 0.48 -0.6 446,617 + AO356_02040 0.48 -1.9 446,617 + AO356_02040 0.48 -0.1 446,617 + AO356_02040 0.48 +0.9 446,618 - AO356_02040 0.48 +0.0 446,618 - AO356_02040 0.48 -0.2 446,618 - AO356_02040 0.48 +0.0 446,618 - AO356_02040 0.48 +0.2 446,618 - AO356_02040 0.48 +1.0 446,618 - AO356_02040 0.48 -0.2 446,618 - AO356_02040 0.48 +0.1 446,762 - AO356_02040 0.64 +0.8 446,830 + AO356_02040 0.71 +0.3 446,830 + AO356_02040 0.71 -0.8 446,831 - AO356_02040 0.71 -0.7
Or see this region's nucleotide sequence