Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00500 and AO356_00505 are separated by 174 nucleotides AO356_00505 and AO356_00510 are separated by 3 nucleotides
AO356_00500: AO356_00500 - magnesium chelatase, at 102,953 to 103,951
_00500
AO356_00505: AO356_00505 - cobalamin biosynthesis protein CobN, at 104,126 to 107,899
_00505
AO356_00510: AO356_00510 - cobalamin biosynthesis protein CobW, at 107,903 to 108,967
_00510
Position (kb) 104
105
106
107
108 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 103.644 kb on + strand, within AO356_00500 at 103.644 kb on + strand, within AO356_00500 at 103.645 kb on - strand, within AO356_00500 at 103.645 kb on - strand, within AO356_00500 at 103.645 kb on - strand, within AO356_00500 at 103.645 kb on - strand, within AO356_00500 at 103.942 kb on + strand at 103.942 kb on + strand at 103.942 kb on + strand at 103.943 kb on - strand at 103.943 kb on - strand at 104.295 kb on + strand at 104.295 kb on + strand at 104.316 kb on + strand at 104.398 kb on + strand at 104.398 kb on + strand at 104.398 kb on + strand at 104.523 kb on + strand, within AO356_00505 at 104.523 kb on + strand, within AO356_00505 at 104.524 kb on - strand, within AO356_00505 at 104.589 kb on + strand, within AO356_00505 at 104.589 kb on + strand, within AO356_00505 at 104.590 kb on - strand, within AO356_00505 at 104.590 kb on - strand, within AO356_00505 at 104.709 kb on + strand, within AO356_00505 at 104.734 kb on - strand, within AO356_00505 at 104.802 kb on + strand, within AO356_00505 at 105.157 kb on + strand, within AO356_00505 at 105.849 kb on + strand, within AO356_00505 at 105.849 kb on + strand, within AO356_00505 at 105.849 kb on + strand, within AO356_00505 at 105.849 kb on + strand, within AO356_00505 at 105.849 kb on + strand, within AO356_00505 at 105.850 kb on - strand, within AO356_00505 at 105.850 kb on - strand, within AO356_00505 at 105.850 kb on - strand, within AO356_00505 at 105.850 kb on - strand, within AO356_00505 at 105.850 kb on - strand, within AO356_00505 at 106.005 kb on + strand, within AO356_00505 at 106.008 kb on + strand, within AO356_00505 at 106.008 kb on + strand, within AO356_00505 at 106.009 kb on - strand, within AO356_00505 at 106.047 kb on + strand, within AO356_00505 at 106.152 kb on + strand, within AO356_00505 at 106.152 kb on + strand, within AO356_00505 at 106.309 kb on - strand, within AO356_00505 at 106.341 kb on + strand, within AO356_00505 at 106.342 kb on - strand, within AO356_00505 at 106.582 kb on + strand, within AO356_00505 at 107.281 kb on - strand, within AO356_00505 at 107.364 kb on + strand, within AO356_00505 at 107.364 kb on + strand, within AO356_00505 at 107.364 kb on + strand, within AO356_00505 at 107.365 kb on - strand, within AO356_00505 at 107.365 kb on - strand, within AO356_00505 at 107.617 kb on - strand at 107.625 kb on + strand at 107.688 kb on + strand at 107.688 kb on + strand at 107.689 kb on - strand at 107.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 103,644 + AO356_00500 0.69 +0.3 103,644 + AO356_00500 0.69 -1.0 103,645 - AO356_00500 0.69 -0.4 103,645 - AO356_00500 0.69 -0.3 103,645 - AO356_00500 0.69 -0.9 103,645 - AO356_00500 0.69 +0.1 103,942 + +0.7 103,942 + -0.6 103,942 + -1.3 103,943 - +0.1 103,943 - -1.0 104,295 + -0.4 104,295 + +0.2 104,316 + -0.1 104,398 + -1.2 104,398 + +0.6 104,398 + -0.3 104,523 + AO356_00505 0.11 -0.4 104,523 + AO356_00505 0.11 +0.9 104,524 - AO356_00505 0.11 -0.6 104,589 + AO356_00505 0.12 -2.3 104,589 + AO356_00505 0.12 -0.6 104,590 - AO356_00505 0.12 -0.4 104,590 - AO356_00505 0.12 -0.1 104,709 + AO356_00505 0.15 -0.9 104,734 - AO356_00505 0.16 -1.3 104,802 + AO356_00505 0.18 -1.7 105,157 + AO356_00505 0.27 -0.1 105,849 + AO356_00505 0.46 -0.1 105,849 + AO356_00505 0.46 -3.2 105,849 + AO356_00505 0.46 -1.3 105,849 + AO356_00505 0.46 -0.3 105,849 + AO356_00505 0.46 +0.8 105,850 - AO356_00505 0.46 -0.4 105,850 - AO356_00505 0.46 -2.0 105,850 - AO356_00505 0.46 -2.0 105,850 - AO356_00505 0.46 -1.1 105,850 - AO356_00505 0.46 -0.5 106,005 + AO356_00505 0.50 +0.4 106,008 + AO356_00505 0.50 -1.3 106,008 + AO356_00505 0.50 +0.4 106,009 - AO356_00505 0.50 -0.1 106,047 + AO356_00505 0.51 +0.2 106,152 + AO356_00505 0.54 -0.8 106,152 + AO356_00505 0.54 +0.4 106,309 - AO356_00505 0.58 -3.4 106,341 + AO356_00505 0.59 -1.3 106,342 - AO356_00505 0.59 -2.1 106,582 + AO356_00505 0.65 -0.4 107,281 - AO356_00505 0.84 -1.1 107,364 + AO356_00505 0.86 -0.9 107,364 + AO356_00505 0.86 -0.1 107,364 + AO356_00505 0.86 -0.4 107,365 - AO356_00505 0.86 -0.8 107,365 - AO356_00505 0.86 +1.2 107,617 - -2.4 107,625 + -0.7 107,688 + -0.6 107,688 + +0.0 107,689 - -2.0 107,689 - +0.3
Or see this region's nucleotide sequence