Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00355

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00350 and AO356_00355 are separated by 2 nucleotidesAO356_00355 and AO356_00360 are separated by 184 nucleotidesAO356_00360 and AO356_00365 are separated by 7 nucleotides AO356_00350: AO356_00350 - excinuclease ABC subunit C, at 68,352 to 70,175 _00350 AO356_00355: AO356_00355 - chemotaxis protein CheY, at 70,178 to 70,762 _00355 AO356_00360: AO356_00360 - GNAT family acetyltransferase, at 70,947 to 71,381 _00360 AO356_00365: AO356_00365 - carbon-nitrogen hydrolase, at 71,389 to 72,150 _00365 Position (kb) 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.268 kb on + strand, within AO356_00350at 69.268 kb on + strand, within AO356_00350at 69.268 kb on + strand, within AO356_00350at 69.268 kb on + strand, within AO356_00350at 69.268 kb on + strand, within AO356_00350at 69.269 kb on - strand, within AO356_00350at 69.271 kb on + strand, within AO356_00350at 69.272 kb on - strand, within AO356_00350at 69.272 kb on - strand, within AO356_00350at 69.272 kb on - strand, within AO356_00350at 69.670 kb on + strand, within AO356_00350at 69.700 kb on + strand, within AO356_00350at 69.700 kb on + strand, within AO356_00350at 69.700 kb on + strand, within AO356_00350at 69.701 kb on - strand, within AO356_00350at 69.701 kb on - strand, within AO356_00350at 69.701 kb on - strand, within AO356_00350at 69.703 kb on + strand, within AO356_00350at 69.703 kb on + strand, within AO356_00350at 69.703 kb on + strand, within AO356_00350at 69.703 kb on + strand, within AO356_00350at 69.704 kb on - strand, within AO356_00350at 69.704 kb on - strand, within AO356_00350at 69.704 kb on - strand, within AO356_00350at 69.794 kb on - strand, within AO356_00350at 69.794 kb on - strand, within AO356_00350at 69.865 kb on + strand, within AO356_00350at 69.865 kb on + strand, within AO356_00350at 69.865 kb on + strand, within AO356_00350at 69.872 kb on - strand, within AO356_00350at 69.872 kb on - strand, within AO356_00350at 69.902 kb on - strand, within AO356_00350at 69.902 kb on - strand, within AO356_00350at 70.039 kb on + strandat 70.081 kb on + strandat 70.081 kb on + strandat 70.082 kb on - strandat 70.082 kb on - strandat 70.262 kb on - strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.273 kb on - strand, within AO356_00355at 70.273 kb on - strand, within AO356_00355at 70.322 kb on + strand, within AO356_00355at 70.322 kb on + strand, within AO356_00355at 70.322 kb on + strand, within AO356_00355at 70.322 kb on + strand, within AO356_00355at 70.323 kb on - strand, within AO356_00355at 70.323 kb on - strand, within AO356_00355at 70.323 kb on - strand, within AO356_00355at 70.449 kb on + strand, within AO356_00355at 70.449 kb on + strand, within AO356_00355at 70.449 kb on + strand, within AO356_00355at 70.450 kb on - strand, within AO356_00355at 70.667 kb on + strand, within AO356_00355at 70.668 kb on - strand, within AO356_00355at 70.733 kb on + strandat 70.733 kb on + strandat 70.769 kb on - strandat 70.769 kb on - strandat 70.769 kb on - strandat 70.806 kb on - strandat 70.813 kb on + strandat 70.814 kb on - strandat 70.843 kb on + strandat 70.864 kb on + strandat 70.888 kb on - strandat 70.911 kb on + strandat 70.912 kb on - strandat 70.924 kb on + strandat 71.020 kb on + strand, within AO356_00360at 71.020 kb on + strand, within AO356_00360at 71.020 kb on + strand, within AO356_00360at 71.021 kb on - strand, within AO356_00360at 71.021 kb on - strand, within AO356_00360at 71.021 kb on - strand, within AO356_00360at 71.148 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.168 kb on - strand, within AO356_00360at 71.299 kb on + strand, within AO356_00360at 71.299 kb on + strand, within AO356_00360at 71.303 kb on - strand, within AO356_00360at 71.303 kb on - strand, within AO356_00360at 71.303 kb on - strand, within AO356_00360at 71.595 kb on - strand, within AO356_00365at 71.624 kb on + strand, within AO356_00365at 71.624 kb on + strand, within AO356_00365at 71.625 kb on - strand, within AO356_00365at 71.625 kb on - strand, within AO356_00365at 71.657 kb on + strand, within AO356_00365at 71.658 kb on - strand, within AO356_00365at 71.658 kb on - strand, within AO356_00365at 71.658 kb on - strand, within AO356_00365at 71.658 kb on - strand, within AO356_00365

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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69,268 + AO356_00350 0.50 +0.0
69,268 + AO356_00350 0.50 -0.3
69,268 + AO356_00350 0.50 +0.4
69,268 + AO356_00350 0.50 +0.1
69,268 + AO356_00350 0.50 +0.6
69,269 - AO356_00350 0.50 +1.9
69,271 + AO356_00350 0.50 +0.1
69,272 - AO356_00350 0.50 +0.4
69,272 - AO356_00350 0.50 +0.2
69,272 - AO356_00350 0.50 +0.2
69,670 + AO356_00350 0.72 -0.3
69,700 + AO356_00350 0.74 -0.3
69,700 + AO356_00350 0.74 -1.0
69,700 + AO356_00350 0.74 -0.4
69,701 - AO356_00350 0.74 +0.9
69,701 - AO356_00350 0.74 +0.4
69,701 - AO356_00350 0.74 -0.3
69,703 + AO356_00350 0.74 +1.2
69,703 + AO356_00350 0.74 +0.4
69,703 + AO356_00350 0.74 -0.7
69,703 + AO356_00350 0.74 +0.3
69,704 - AO356_00350 0.74 -1.2
69,704 - AO356_00350 0.74 -0.1
69,704 - AO356_00350 0.74 -0.0
69,794 - AO356_00350 0.79 -0.3
69,794 - AO356_00350 0.79 +0.8
69,865 + AO356_00350 0.83 -0.1
69,865 + AO356_00350 0.83 +0.1
69,865 + AO356_00350 0.83 -1.1
69,872 - AO356_00350 0.83 -0.2
69,872 - AO356_00350 0.83 -0.1
69,902 - AO356_00350 0.85 +0.8
69,902 - AO356_00350 0.85 -0.2
70,039 + +0.6
70,081 + -0.6
70,081 + +0.3
70,082 - +0.4
70,082 - -0.4
70,262 - AO356_00355 0.14 -2.1
70,272 + AO356_00355 0.16 -2.6
70,272 + AO356_00355 0.16 -2.9
70,272 + AO356_00355 0.16 -1.6
70,272 + AO356_00355 0.16 -1.5
70,272 + AO356_00355 0.16 -2.5
70,273 - AO356_00355 0.16 -1.1
70,273 - AO356_00355 0.16 -2.2
70,322 + AO356_00355 0.25 -1.3
70,322 + AO356_00355 0.25 -0.9
70,322 + AO356_00355 0.25 -2.9
70,322 + AO356_00355 0.25 -1.9
70,323 - AO356_00355 0.25 -2.5
70,323 - AO356_00355 0.25 -2.9
70,323 - AO356_00355 0.25 -0.9
70,449 + AO356_00355 0.46 -2.6
70,449 + AO356_00355 0.46 -2.9
70,449 + AO356_00355 0.46 -1.3
70,450 - AO356_00355 0.46 -2.2
70,667 + AO356_00355 0.84 -2.6
70,668 - AO356_00355 0.84 -2.7
70,733 + -0.8
70,733 + -3.3
70,769 - -1.7
70,769 - -2.6
70,769 - -0.6
70,806 - -2.9
70,813 + -3.3
70,814 - -0.2
70,843 + -2.1
70,864 + -2.0
70,888 - -0.7
70,911 + +0.2
70,912 - +0.0
70,924 + +0.9
71,020 + AO356_00360 0.17 +0.0
71,020 + AO356_00360 0.17 +0.3
71,020 + AO356_00360 0.17 +0.1
71,021 - AO356_00360 0.17 +1.3
71,021 - AO356_00360 0.17 -1.0
71,021 - AO356_00360 0.17 +0.6
71,148 + AO356_00360 0.46 +0.1
71,167 + AO356_00360 0.51 +1.8
71,167 + AO356_00360 0.51 -0.5
71,167 + AO356_00360 0.51 +0.4
71,167 + AO356_00360 0.51 +0.2
71,167 + AO356_00360 0.51 +1.1
71,167 + AO356_00360 0.51 +0.1
71,168 - AO356_00360 0.51 +0.2
71,299 + AO356_00360 0.81 -0.1
71,299 + AO356_00360 0.81 -0.6
71,303 - AO356_00360 0.82 +0.0
71,303 - AO356_00360 0.82 -0.7
71,303 - AO356_00360 0.82 +0.5
71,595 - AO356_00365 0.27 +0.5
71,624 + AO356_00365 0.31 +0.0
71,624 + AO356_00365 0.31 +0.2
71,625 - AO356_00365 0.31 +0.8
71,625 - AO356_00365 0.31 +0.5
71,657 + AO356_00365 0.35 +0.4
71,658 - AO356_00365 0.35 +0.0
71,658 - AO356_00365 0.35 +1.3
71,658 - AO356_00365 0.35 +0.1
71,658 - AO356_00365 0.35 +0.6

Or see this region's nucleotide sequence