Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00030

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00025 and AO356_00030 are separated by 292 nucleotidesAO356_00030 and AO356_00035 are separated by 61 nucleotides AO356_00025: AO356_00025 - ABC transporter for D-Sorbitol, periplasmic substrate-binding component (from data), at 3,448 to 4,758 _00025 AO356_00030: AO356_00030 - AraC family transcriptional regulator, at 5,051 to 6,001 _00030 AO356_00035: AO356_00035 - Fructokinase (EC 2.7.1.4) (from data), at 6,063 to 6,977 _00035 Position (kb) 5 6 7Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4.062 kb on - strand, within AO356_00025at 4.062 kb on - strand, within AO356_00025at 4.082 kb on + strand, within AO356_00025at 4.083 kb on - strand, within AO356_00025at 4.230 kb on - strand, within AO356_00025at 4.340 kb on + strand, within AO356_00025at 4.340 kb on + strand, within AO356_00025at 4.341 kb on - strand, within AO356_00025at 4.377 kb on - strand, within AO356_00025at 4.383 kb on + strand, within AO356_00025at 4.384 kb on - strand, within AO356_00025at 4.384 kb on - strand, within AO356_00025at 4.476 kb on + strand, within AO356_00025at 4.476 kb on + strand, within AO356_00025at 4.476 kb on + strand, within AO356_00025at 4.476 kb on + strand, within AO356_00025at 4.476 kb on + strand, within AO356_00025at 4.477 kb on - strand, within AO356_00025at 4.477 kb on - strand, within AO356_00025at 4.477 kb on - strand, within AO356_00025at 4.477 kb on - strand, within AO356_00025at 4.499 kb on + strand, within AO356_00025at 4.499 kb on + strand, within AO356_00025at 4.500 kb on - strand, within AO356_00025at 4.500 kb on - strand, within AO356_00025at 4.704 kb on + strandat 4.728 kb on + strandat 4.728 kb on + strandat 4.728 kb on + strandat 4.750 kb on - strandat 4.792 kb on + strandat 4.792 kb on + strandat 4.792 kb on + strandat 4.793 kb on - strandat 4.858 kb on + strandat 4.858 kb on + strandat 4.859 kb on - strandat 4.859 kb on - strandat 4.859 kb on - strandat 4.867 kb on + strandat 4.953 kb on + strandat 4.969 kb on + strandat 4.970 kb on - strandat 5.029 kb on + strandat 5.030 kb on - strandat 5.030 kb on - strandat 5.030 kb on - strandat 5.030 kb on - strandat 5.030 kb on - strandat 5.033 kb on + strandat 5.035 kb on + strandat 5.035 kb on + strandat 5.035 kb on + strandat 5.036 kb on - strandat 5.240 kb on + strand, within AO356_00030at 5.240 kb on + strand, within AO356_00030at 5.241 kb on - strand, within AO356_00030at 5.453 kb on - strand, within AO356_00030at 5.544 kb on + strand, within AO356_00030at 5.601 kb on - strand, within AO356_00030at 5.638 kb on + strand, within AO356_00030at 5.654 kb on + strand, within AO356_00030at 5.655 kb on - strand, within AO356_00030at 5.924 kb on + strandat 5.932 kb on + strandat 5.933 kb on - strandat 5.933 kb on - strandat 5.933 kb on - strandat 5.933 kb on - strandat 5.933 kb on - strandat 5.935 kb on + strandat 5.935 kb on + strandat 5.936 kb on - strandat 5.936 kb on - strandat 6.011 kb on + strandat 6.012 kb on - strandat 6.012 kb on - strandat 6.012 kb on - strandat 6.029 kb on + strandat 6.030 kb on - strandat 6.046 kb on + strandat 6.046 kb on + strandat 6.370 kb on + strand, within AO356_00035at 6.437 kb on + strand, within AO356_00035at 6.515 kb on + strand, within AO356_00035at 6.515 kb on + strand, within AO356_00035at 6.515 kb on + strand, within AO356_00035at 6.516 kb on - strand, within AO356_00035at 6.516 kb on - strand, within AO356_00035at 6.520 kb on - strand, within AO356_00035at 6.520 kb on - strand, within AO356_00035at 6.520 kb on - strand, within AO356_00035at 6.631 kb on + strand, within AO356_00035at 6.631 kb on + strand, within AO356_00035at 6.632 kb on - strand, within AO356_00035at 6.633 kb on + strand, within AO356_00035at 6.634 kb on - strand, within AO356_00035at 6.686 kb on + strand, within AO356_00035at 6.686 kb on + strand, within AO356_00035at 6.722 kb on + strand, within AO356_00035at 6.723 kb on - strand, within AO356_00035at 6.732 kb on + strand, within AO356_00035at 6.732 kb on + strand, within AO356_00035at 6.732 kb on + strand, within AO356_00035at 6.732 kb on + strand, within AO356_00035at 6.732 kb on + strand, within AO356_00035at 6.732 kb on + strand, within AO356_00035at 6.732 kb on + strand, within AO356_00035at 6.732 kb on + strand, within AO356_00035at 6.733 kb on - strand, within AO356_00035at 6.785 kb on + strand, within AO356_00035at 6.809 kb on + strand, within AO356_00035at 6.839 kb on - strand, within AO356_00035at 6.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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4,062 - AO356_00025 0.47 +0.1
4,062 - AO356_00025 0.47 -2.6
4,082 + AO356_00025 0.48 -2.9
4,083 - AO356_00025 0.48 +1.0
4,230 - AO356_00025 0.60 -3.0
4,340 + AO356_00025 0.68 -3.8
4,340 + AO356_00025 0.68 -2.3
4,341 - AO356_00025 0.68 -2.0
4,377 - AO356_00025 0.71 -2.3
4,383 + AO356_00025 0.71 -2.6
4,384 - AO356_00025 0.71 -2.6
4,384 - AO356_00025 0.71 -1.6
4,476 + AO356_00025 0.78 -2.4
4,476 + AO356_00025 0.78 -1.9
4,476 + AO356_00025 0.78 -3.8
4,476 + AO356_00025 0.78 -1.1
4,476 + AO356_00025 0.78 -3.6
4,477 - AO356_00025 0.78 -2.3
4,477 - AO356_00025 0.78 -2.1
4,477 - AO356_00025 0.78 -2.3
4,477 - AO356_00025 0.78 -1.9
4,499 + AO356_00025 0.80 -2.0
4,499 + AO356_00025 0.80 -2.0
4,500 - AO356_00025 0.80 -2.2
4,500 - AO356_00025 0.80 -2.1
4,704 + -3.9
4,728 + -4.0
4,728 + -2.8
4,728 + -1.8
4,750 - -0.4
4,792 + -2.1
4,792 + -2.9
4,792 + -3.3
4,793 - -2.6
4,858 + -1.9
4,858 + -1.3
4,859 - -0.4
4,859 - -0.7
4,859 - -1.1
4,867 + -3.3
4,953 + -1.4
4,969 + -0.3
4,970 - -1.2
5,029 + +0.3
5,030 - -3.0
5,030 - -2.3
5,030 - -2.2
5,030 - -1.9
5,030 - -4.3
5,033 + -0.0
5,035 + -0.7
5,035 + +0.5
5,035 + -1.1
5,036 - -1.3
5,240 + AO356_00030 0.20 -5.2
5,240 + AO356_00030 0.20 -3.4
5,241 - AO356_00030 0.20 -3.7
5,453 - AO356_00030 0.42 -2.1
5,544 + AO356_00030 0.52 -1.4
5,601 - AO356_00030 0.58 -2.7
5,638 + AO356_00030 0.62 -2.2
5,654 + AO356_00030 0.63 -2.4
5,655 - AO356_00030 0.64 -3.3
5,924 + -0.8
5,932 + -1.3
5,933 - -4.2
5,933 - -3.5
5,933 - -3.3
5,933 - -3.5
5,933 - -3.4
5,935 + -0.3
5,935 + -0.9
5,936 - -3.4
5,936 - -3.3
6,011 + -1.4
6,012 - -1.3
6,012 - -3.8
6,012 - -2.4
6,029 + -3.8
6,030 - -3.4
6,046 + -0.7
6,046 + +0.3
6,370 + AO356_00035 0.34 -3.4
6,437 + AO356_00035 0.41 -3.0
6,515 + AO356_00035 0.49 -4.0
6,515 + AO356_00035 0.49 -3.0
6,515 + AO356_00035 0.49 -3.0
6,516 - AO356_00035 0.50 -2.9
6,516 - AO356_00035 0.50 -3.4
6,520 - AO356_00035 0.50 -1.2
6,520 - AO356_00035 0.50 -1.9
6,520 - AO356_00035 0.50 -1.7
6,631 + AO356_00035 0.62 -2.0
6,631 + AO356_00035 0.62 -1.3
6,632 - AO356_00035 0.62 -2.9
6,633 + AO356_00035 0.62 -1.4
6,634 - AO356_00035 0.62 -2.1
6,686 + AO356_00035 0.68 -4.2
6,686 + AO356_00035 0.68 -3.2
6,722 + AO356_00035 0.72 -3.6
6,723 - AO356_00035 0.72 -1.1
6,732 + AO356_00035 0.73 -3.0
6,732 + AO356_00035 0.73 -4.0
6,732 + AO356_00035 0.73 -3.0
6,732 + AO356_00035 0.73 -3.1
6,732 + AO356_00035 0.73 -2.3
6,732 + AO356_00035 0.73 -3.3
6,732 + AO356_00035 0.73 -5.0
6,732 + AO356_00035 0.73 -2.7
6,733 - AO356_00035 0.73 -4.5
6,785 + AO356_00035 0.79 -3.4
6,809 + AO356_00035 0.82 -4.1
6,839 - AO356_00035 0.85 -2.5
6,915 + -2.9

Or see this region's nucleotide sequence