Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00020

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00010 and AO356_00015 are separated by 57 nucleotidesAO356_00015 and AO356_00020 are separated by 10 nucleotidesAO356_00020 and AO356_00025 are separated by 59 nucleotides AO356_00010: AO356_00010 - ABC transporter for D-Sorbitol, ATPase component (from data), at 463 to 1,560 _00010 AO356_00015: AO356_00015 - ABC transporter for D-Sorbitol, permease component 1 (from data), at 1,618 to 2,451 _00015 AO356_00020: AO356_00020 - ABC transporter for D-Sorbitol, permease component 2 (from data), at 2,462 to 3,388 _00020 AO356_00025: AO356_00025 - ABC transporter for D-Sorbitol, periplasmic substrate-binding component (from data), at 3,448 to 4,758 _00025 Position (kb) 2 3 4Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1.574 kb on + strandat 1.686 kb on + strandat 1.687 kb on - strandat 1.954 kb on - strand, within AO356_00015at 1.964 kb on + strand, within AO356_00015at 1.965 kb on - strand, within AO356_00015at 1.970 kb on + strand, within AO356_00015at 1.971 kb on - strand, within AO356_00015at 2.009 kb on + strand, within AO356_00015at 2.010 kb on - strand, within AO356_00015at 2.066 kb on + strand, within AO356_00015at 2.066 kb on + strand, within AO356_00015at 2.066 kb on + strand, within AO356_00015at 2.067 kb on - strand, within AO356_00015at 2.067 kb on - strand, within AO356_00015at 2.070 kb on + strand, within AO356_00015at 2.070 kb on + strand, within AO356_00015at 2.071 kb on - strand, within AO356_00015at 2.071 kb on - strand, within AO356_00015at 2.071 kb on - strand, within AO356_00015at 2.071 kb on - strand, within AO356_00015at 2.110 kb on + strand, within AO356_00015at 2.150 kb on + strand, within AO356_00015at 2.150 kb on + strand, within AO356_00015at 2.273 kb on + strand, within AO356_00015at 2.286 kb on + strand, within AO356_00015at 2.287 kb on - strand, within AO356_00015at 2.347 kb on - strand, within AO356_00015at 2.439 kb on + strandat 2.440 kb on - strandat 2.592 kb on + strand, within AO356_00020at 2.593 kb on - strand, within AO356_00020at 2.601 kb on + strand, within AO356_00020at 2.601 kb on + strand, within AO356_00020at 2.663 kb on + strand, within AO356_00020at 2.891 kb on + strand, within AO356_00020at 3.001 kb on + strand, within AO356_00020at 3.001 kb on + strand, within AO356_00020at 3.032 kb on + strand, within AO356_00020at 3.032 kb on + strand, within AO356_00020at 3.034 kb on + strand, within AO356_00020at 3.035 kb on - strand, within AO356_00020at 3.123 kb on - strand, within AO356_00020at 3.171 kb on + strand, within AO356_00020at 3.243 kb on + strand, within AO356_00020at 3.392 kb on + strandat 3.392 kb on + strandat 3.396 kb on + strandat 3.396 kb on + strandat 3.446 kb on - strandat 3.571 kb on - strandat 3.602 kb on + strand, within AO356_00025at 3.602 kb on + strand, within AO356_00025at 3.602 kb on + strand, within AO356_00025at 3.603 kb on - strand, within AO356_00025at 3.617 kb on + strand, within AO356_00025at 3.704 kb on + strand, within AO356_00025at 3.716 kb on + strand, within AO356_00025at 3.716 kb on + strand, within AO356_00025at 3.772 kb on + strand, within AO356_00025at 3.773 kb on - strand, within AO356_00025at 3.773 kb on - strand, within AO356_00025at 3.773 kb on - strand, within AO356_00025at 3.773 kb on - strand, within AO356_00025at 3.773 kb on - strand, within AO356_00025at 3.783 kb on - strand, within AO356_00025at 3.783 kb on - strand, within AO356_00025at 3.866 kb on + strand, within AO356_00025at 3.866 kb on + strand, within AO356_00025at 3.867 kb on - strand, within AO356_00025at 3.867 kb on - strand, within AO356_00025at 3.900 kb on + strand, within AO356_00025at 3.919 kb on + strand, within AO356_00025at 3.919 kb on + strand, within AO356_00025at 3.919 kb on + strand, within AO356_00025at 4.046 kb on - strand, within AO356_00025at 4.062 kb on - strand, within AO356_00025at 4.062 kb on - strand, within AO356_00025at 4.082 kb on + strand, within AO356_00025at 4.083 kb on - strand, within AO356_00025at 4.230 kb on - strand, within AO356_00025at 4.340 kb on + strand, within AO356_00025at 4.340 kb on + strand, within AO356_00025at 4.341 kb on - strand, within AO356_00025at 4.377 kb on - strand, within AO356_00025at 4.383 kb on + strand, within AO356_00025at 4.384 kb on - strand, within AO356_00025at 4.384 kb on - strand, within AO356_00025

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,574 + -3.1
1,686 + -2.4
1,687 - -0.9
1,954 - AO356_00015 0.40 -3.3
1,964 + AO356_00015 0.41 -3.6
1,965 - AO356_00015 0.42 -2.0
1,970 + AO356_00015 0.42 -2.1
1,971 - AO356_00015 0.42 -1.6
2,009 + AO356_00015 0.47 -3.7
2,010 - AO356_00015 0.47 -3.0
2,066 + AO356_00015 0.54 -1.1
2,066 + AO356_00015 0.54 -3.2
2,066 + AO356_00015 0.54 -1.4
2,067 - AO356_00015 0.54 -2.6
2,067 - AO356_00015 0.54 -2.9
2,070 + AO356_00015 0.54 -1.7
2,070 + AO356_00015 0.54 -3.5
2,071 - AO356_00015 0.54 -3.1
2,071 - AO356_00015 0.54 -1.1
2,071 - AO356_00015 0.54 -2.3
2,071 - AO356_00015 0.54 -2.1
2,110 + AO356_00015 0.59 -1.1
2,150 + AO356_00015 0.64 -3.3
2,150 + AO356_00015 0.64 -1.1
2,273 + AO356_00015 0.79 -1.9
2,286 + AO356_00015 0.80 -3.7
2,287 - AO356_00015 0.80 -3.4
2,347 - AO356_00015 0.87 -1.8
2,439 + -3.1
2,440 - -4.7
2,592 + AO356_00020 0.14 -2.9
2,593 - AO356_00020 0.14 -1.9
2,601 + AO356_00020 0.15 -3.3
2,601 + AO356_00020 0.15 -2.8
2,663 + AO356_00020 0.22 -2.2
2,891 + AO356_00020 0.46 -3.0
3,001 + AO356_00020 0.58 -2.1
3,001 + AO356_00020 0.58 -3.3
3,032 + AO356_00020 0.61 -1.6
3,032 + AO356_00020 0.61 -2.6
3,034 + AO356_00020 0.62 -3.7
3,035 - AO356_00020 0.62 -3.4
3,123 - AO356_00020 0.71 -1.9
3,171 + AO356_00020 0.76 -4.3
3,243 + AO356_00020 0.84 -4.3
3,392 + -2.9
3,392 + -2.8
3,396 + -3.7
3,396 + -0.8
3,446 - -2.4
3,571 - -1.2
3,602 + AO356_00025 0.12 -1.1
3,602 + AO356_00025 0.12 -2.6
3,602 + AO356_00025 0.12 -3.4
3,603 - AO356_00025 0.12 -2.1
3,617 + AO356_00025 0.13 -2.7
3,704 + AO356_00025 0.20 -2.5
3,716 + AO356_00025 0.20 -2.4
3,716 + AO356_00025 0.20 -2.5
3,772 + AO356_00025 0.25 -1.7
3,773 - AO356_00025 0.25 -2.0
3,773 - AO356_00025 0.25 -0.9
3,773 - AO356_00025 0.25 -2.8
3,773 - AO356_00025 0.25 -2.4
3,773 - AO356_00025 0.25 -2.9
3,783 - AO356_00025 0.26 -3.1
3,783 - AO356_00025 0.26 -1.6
3,866 + AO356_00025 0.32 -3.5
3,866 + AO356_00025 0.32 -3.5
3,867 - AO356_00025 0.32 -1.1
3,867 - AO356_00025 0.32 -3.4
3,900 + AO356_00025 0.34 -2.9
3,919 + AO356_00025 0.36 -2.1
3,919 + AO356_00025 0.36 -3.7
3,919 + AO356_00025 0.36 -2.7
4,046 - AO356_00025 0.46 -1.3
4,062 - AO356_00025 0.47 +0.1
4,062 - AO356_00025 0.47 -2.6
4,082 + AO356_00025 0.48 -2.9
4,083 - AO356_00025 0.48 +1.0
4,230 - AO356_00025 0.60 -3.0
4,340 + AO356_00025 0.68 -3.8
4,340 + AO356_00025 0.68 -2.3
4,341 - AO356_00025 0.68 -2.0
4,377 - AO356_00025 0.71 -2.3
4,383 + AO356_00025 0.71 -2.6
4,384 - AO356_00025 0.71 -2.6
4,384 - AO356_00025 0.71 -1.6

Or see this region's nucleotide sequence