Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.926.1 and Xcc-8004.927.1 are separated by 122 nucleotides Xcc-8004.927.1 and Xcc-8004.929.1 are separated by 149 nucleotides
Xcc-8004.926.1: Xcc-8004.926.1 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 869,840 to 870,781
Xcc-8004.926.1
Xcc-8004.927.1: Xcc-8004.927.1 - Nucleoside-diphosphate-sugar epimerases, at 870,904 to 871,962
Xcc-8004.927.1
Xcc-8004.929.1: Xcc-8004.929.1 - Osmotically inducible protein OsmY, at 872,112 to 872,483
Xcc-8004.929.1
Position (kb) 870
871
872 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 870.128 kb on + strand, within Xcc-8004.926.1 at 870.129 kb on - strand, within Xcc-8004.926.1 at 870.129 kb on - strand, within Xcc-8004.926.1 at 870.129 kb on - strand, within Xcc-8004.926.1 at 870.131 kb on + strand, within Xcc-8004.926.1 at 870.132 kb on - strand, within Xcc-8004.926.1 at 870.231 kb on - strand, within Xcc-8004.926.1 at 870.231 kb on - strand, within Xcc-8004.926.1 at 870.231 kb on - strand, within Xcc-8004.926.1 at 870.398 kb on + strand, within Xcc-8004.926.1 at 870.398 kb on + strand, within Xcc-8004.926.1 at 870.399 kb on - strand, within Xcc-8004.926.1 at 870.560 kb on + strand, within Xcc-8004.926.1 at 870.560 kb on + strand, within Xcc-8004.926.1 at 870.561 kb on - strand, within Xcc-8004.926.1 at 870.561 kb on - strand, within Xcc-8004.926.1 at 870.689 kb on - strand at 871.052 kb on + strand, within Xcc-8004.927.1 at 871.052 kb on + strand, within Xcc-8004.927.1 at 871.052 kb on + strand, within Xcc-8004.927.1 at 871.053 kb on - strand, within Xcc-8004.927.1 at 871.053 kb on - strand, within Xcc-8004.927.1 at 871.053 kb on - strand, within Xcc-8004.927.1 at 871.076 kb on - strand, within Xcc-8004.927.1 at 871.223 kb on + strand, within Xcc-8004.927.1 at 871.223 kb on + strand, within Xcc-8004.927.1 at 871.223 kb on + strand, within Xcc-8004.927.1 at 871.223 kb on + strand, within Xcc-8004.927.1 at 871.224 kb on - strand, within Xcc-8004.927.1 at 871.224 kb on - strand, within Xcc-8004.927.1 at 871.224 kb on - strand, within Xcc-8004.927.1 at 871.331 kb on + strand, within Xcc-8004.927.1 at 871.331 kb on + strand, within Xcc-8004.927.1 at 871.332 kb on - strand, within Xcc-8004.927.1 at 871.332 kb on - strand, within Xcc-8004.927.1 at 871.332 kb on - strand, within Xcc-8004.927.1 at 871.332 kb on - strand, within Xcc-8004.927.1 at 871.439 kb on + strand, within Xcc-8004.927.1 at 871.439 kb on + strand, within Xcc-8004.927.1 at 871.439 kb on + strand, within Xcc-8004.927.1 at 871.440 kb on - strand, within Xcc-8004.927.1 at 871.440 kb on - strand, within Xcc-8004.927.1 at 871.681 kb on - strand, within Xcc-8004.927.1 at 871.681 kb on - strand, within Xcc-8004.927.1 at 871.681 kb on - strand, within Xcc-8004.927.1 at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.956 kb on + strand at 871.956 kb on + strand at 871.956 kb on + strand at 871.956 kb on + strand at 872.003 kb on + strand at 872.003 kb on + strand at 872.003 kb on + strand at 872.003 kb on + strand at 872.004 kb on - strand at 872.004 kb on - strand at 872.004 kb on - strand at 872.004 kb on - strand at 872.004 kb on - strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.546 kb on + strand at 872.546 kb on + strand at 872.818 kb on + strand at 872.819 kb on - strand at 872.819 kb on - strand at 872.828 kb on + strand at 872.829 kb on - strand at 872.829 kb on - strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.899 kb on + strand at 872.900 kb on - strand at 872.914 kb on - strand at 872.914 kb on - strand at 872.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 870,128 + Xcc-8004.926.1 0.31 -0.7 870,129 - Xcc-8004.926.1 0.31 +2.8 870,129 - Xcc-8004.926.1 0.31 +5.9 870,129 - Xcc-8004.926.1 0.31 -0.1 870,131 + Xcc-8004.926.1 0.31 +2.7 870,132 - Xcc-8004.926.1 0.31 +0.9 870,231 - Xcc-8004.926.1 0.42 +1.4 870,231 - Xcc-8004.926.1 0.42 -0.3 870,231 - Xcc-8004.926.1 0.42 +1.2 870,398 + Xcc-8004.926.1 0.59 -0.3 870,398 + Xcc-8004.926.1 0.59 -1.1 870,399 - Xcc-8004.926.1 0.59 -1.0 870,560 + Xcc-8004.926.1 0.76 +0.3 870,560 + Xcc-8004.926.1 0.76 +2.0 870,561 - Xcc-8004.926.1 0.77 +1.5 870,561 - Xcc-8004.926.1 0.77 +1.0 870,689 - -1.5 871,052 + Xcc-8004.927.1 0.14 +0.3 871,052 + Xcc-8004.927.1 0.14 +1.9 871,052 + Xcc-8004.927.1 0.14 +0.7 871,053 - Xcc-8004.927.1 0.14 -0.1 871,053 - Xcc-8004.927.1 0.14 +3.2 871,053 - Xcc-8004.927.1 0.14 -2.1 871,076 - Xcc-8004.927.1 0.16 +1.7 871,223 + Xcc-8004.927.1 0.30 +0.2 871,223 + Xcc-8004.927.1 0.30 +0.0 871,223 + Xcc-8004.927.1 0.30 -0.1 871,223 + Xcc-8004.927.1 0.30 -0.9 871,224 - Xcc-8004.927.1 0.30 -0.7 871,224 - Xcc-8004.927.1 0.30 -1.5 871,224 - Xcc-8004.927.1 0.30 +0.5 871,331 + Xcc-8004.927.1 0.40 -0.9 871,331 + Xcc-8004.927.1 0.40 -0.9 871,332 - Xcc-8004.927.1 0.40 -0.0 871,332 - Xcc-8004.927.1 0.40 -1.4 871,332 - Xcc-8004.927.1 0.40 -0.9 871,332 - Xcc-8004.927.1 0.40 +2.6 871,439 + Xcc-8004.927.1 0.51 +1.2 871,439 + Xcc-8004.927.1 0.51 -0.2 871,439 + Xcc-8004.927.1 0.51 +0.1 871,440 - Xcc-8004.927.1 0.51 -0.3 871,440 - Xcc-8004.927.1 0.51 -1.8 871,681 - Xcc-8004.927.1 0.73 +1.5 871,681 - Xcc-8004.927.1 0.73 -0.8 871,681 - Xcc-8004.927.1 0.73 +3.8 871,922 + +2.8 871,922 + +0.1 871,922 + -0.5 871,922 + +0.4 871,922 + +0.6 871,922 + +1.7 871,922 + -0.8 871,922 + +0.2 871,922 + +0.1 871,923 - +0.2 871,923 - -0.3 871,923 - -1.1 871,923 - +0.2 871,923 - -0.3 871,923 - +0.1 871,923 - -0.3 871,923 - +4.3 871,923 - -1.3 871,923 - -2.3 871,923 - -0.3 871,956 + +0.1 871,956 + +0.5 871,956 + +1.9 871,956 + +1.0 872,003 + -0.1 872,003 + +1.5 872,003 + -0.5 872,003 + +0.5 872,004 - +0.3 872,004 - +2.0 872,004 - +0.6 872,004 - -0.7 872,004 - -0.7 872,481 + -1.9 872,481 + +1.4 872,481 + +1.5 872,481 + +1.7 872,481 + -0.9 872,481 + -0.3 872,481 + +0.2 872,481 + -0.8 872,481 + -2.4 872,481 + -0.3 872,481 + -1.7 872,481 + -0.3 872,481 + -1.5 872,481 + -0.9 872,482 - -1.9 872,482 - -0.8 872,482 - -0.2 872,482 - +1.0 872,482 - +3.5 872,482 - -2.3 872,482 - -0.7 872,482 - -0.1 872,482 - -2.2 872,482 - -1.7 872,482 - -0.2 872,482 - -1.2 872,482 - +1.1 872,546 + +0.8 872,546 + -0.8 872,818 + +0.7 872,819 - +1.5 872,819 - -2.1 872,828 + -1.4 872,829 - +0.5 872,829 - -0.9 872,894 + +0.1 872,894 + +0.5 872,894 + +0.9 872,894 + -2.9 872,894 + +0.3 872,894 + -1.5 872,894 + -0.4 872,894 + -1.2 872,895 - +0.6 872,895 - -1.1 872,895 - -0.6 872,895 - -1.0 872,895 - +0.3 872,895 - +0.2 872,895 - +1.9 872,895 - +0.1 872,895 - -0.3 872,895 - -1.5 872,899 + -0.7 872,900 - +0.6 872,914 - +2.2 872,914 - +0.9 872,914 - -2.7
Or see this region's nucleotide sequence