Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.870.1 and Xcc-8004.871.1 overlap by 53 nucleotides Xcc-8004.871.1 and Xcc-8004.872.1 overlap by 4 nucleotides Xcc-8004.872.1 and Xcc-8004.873.1 are separated by 34 nucleotides
Xcc-8004.870.1: Xcc-8004.870.1 - MoxJ protein, at 817,665 to 819,419
Xcc-8004.870.1
Xcc-8004.871.1: Xcc-8004.871.1 - FIG01209691: hypothetical protein, at 819,367 to 820,086
Xcc-8004.871.1
Xcc-8004.872.1: Xcc-8004.872.1 - surface antigen gene, at 820,083 to 821,129
Xcc-8004.872.1
Xcc-8004.873.1: Xcc-8004.873.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 821,164 to 822,270
Xcc-8004.873.1
Position (kb) 820
821
822 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 819.211 kb on + strand, within Xcc-8004.870.1 at 819.333 kb on - strand at 819.333 kb on - strand at 819.417 kb on + strand at 819.418 kb on - strand at 819.800 kb on + strand, within Xcc-8004.871.1 at 819.800 kb on + strand, within Xcc-8004.871.1 at 819.801 kb on - strand, within Xcc-8004.871.1 at 819.801 kb on - strand, within Xcc-8004.871.1 at 819.802 kb on + strand, within Xcc-8004.871.1 at 819.802 kb on + strand, within Xcc-8004.871.1 at 819.803 kb on - strand, within Xcc-8004.871.1 at 819.886 kb on + strand, within Xcc-8004.871.1 at 819.886 kb on + strand, within Xcc-8004.871.1 at 819.886 kb on + strand, within Xcc-8004.871.1 at 819.886 kb on + strand, within Xcc-8004.871.1 at 819.886 kb on + strand, within Xcc-8004.871.1 at 819.887 kb on - strand, within Xcc-8004.871.1 at 819.887 kb on - strand, within Xcc-8004.871.1 at 820.357 kb on + strand, within Xcc-8004.872.1 at 820.383 kb on + strand, within Xcc-8004.872.1 at 820.384 kb on - strand, within Xcc-8004.872.1 at 820.384 kb on - strand, within Xcc-8004.872.1 at 820.615 kb on - strand, within Xcc-8004.872.1 at 820.764 kb on + strand, within Xcc-8004.872.1 at 820.765 kb on - strand, within Xcc-8004.872.1 at 820.890 kb on + strand, within Xcc-8004.872.1 at 820.891 kb on - strand, within Xcc-8004.872.1 at 820.891 kb on - strand, within Xcc-8004.872.1 at 820.891 kb on - strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.016 kb on + strand, within Xcc-8004.872.1 at 821.017 kb on - strand, within Xcc-8004.872.1 at 821.017 kb on - strand, within Xcc-8004.872.1 at 821.017 kb on - strand, within Xcc-8004.872.1 at 821.572 kb on - strand, within Xcc-8004.873.1 at 821.591 kb on - strand, within Xcc-8004.873.1 at 821.591 kb on - strand, within Xcc-8004.873.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 819,211 + Xcc-8004.870.1 0.88 -0.3 819,333 - +0.1 819,333 - +3.5 819,417 + -0.4 819,418 - +0.7 819,800 + Xcc-8004.871.1 0.60 +0.4 819,800 + Xcc-8004.871.1 0.60 -0.9 819,801 - Xcc-8004.871.1 0.60 -0.7 819,801 - Xcc-8004.871.1 0.60 +2.3 819,802 + Xcc-8004.871.1 0.60 +4.6 819,802 + Xcc-8004.871.1 0.60 +0.1 819,803 - Xcc-8004.871.1 0.61 -1.1 819,886 + Xcc-8004.871.1 0.72 -0.8 819,886 + Xcc-8004.871.1 0.72 +1.5 819,886 + Xcc-8004.871.1 0.72 -0.9 819,886 + Xcc-8004.871.1 0.72 +1.3 819,886 + Xcc-8004.871.1 0.72 -1.1 819,887 - Xcc-8004.871.1 0.72 +1.2 819,887 - Xcc-8004.871.1 0.72 +1.7 820,357 + Xcc-8004.872.1 0.26 -0.7 820,383 + Xcc-8004.872.1 0.29 +1.7 820,384 - Xcc-8004.872.1 0.29 -0.8 820,384 - Xcc-8004.872.1 0.29 +1.9 820,615 - Xcc-8004.872.1 0.51 +0.8 820,764 + Xcc-8004.872.1 0.65 +1.7 820,765 - Xcc-8004.872.1 0.65 -1.8 820,890 + Xcc-8004.872.1 0.77 -2.2 820,891 - Xcc-8004.872.1 0.77 +2.0 820,891 - Xcc-8004.872.1 0.77 -2.3 820,891 - Xcc-8004.872.1 0.77 +0.4 821,016 + Xcc-8004.872.1 0.89 +1.3 821,016 + Xcc-8004.872.1 0.89 -0.9 821,016 + Xcc-8004.872.1 0.89 +0.5 821,016 + Xcc-8004.872.1 0.89 +1.4 821,016 + Xcc-8004.872.1 0.89 +1.2 821,017 - Xcc-8004.872.1 0.89 -1.3 821,017 - Xcc-8004.872.1 0.89 +3.3 821,017 - Xcc-8004.872.1 0.89 -1.1 821,572 - Xcc-8004.873.1 0.37 -0.1 821,591 - Xcc-8004.873.1 0.39 +4.6 821,591 - Xcc-8004.873.1 0.39 -1.5
Or see this region's nucleotide sequence