Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.662.1 and Xcc-8004.663.1 overlap by 4 nucleotides Xcc-8004.663.1 and Xcc-8004.664.1 overlap by 4 nucleotides Xcc-8004.664.1 and Xcc-8004.665.1 overlap by 4 nucleotides
Xcc-8004.662.1: Xcc-8004.662.1 - Putative lipase in cluster with Phosphatidate cytidylyltransferase, at 604,228 to 605,991
Xcc-8004.662.1
Xcc-8004.663.1: Xcc-8004.663.1 - Ser/Thr and Tyr protein phosphatase (dual specificity), at 605,988 to 607,322
Xcc-8004.663.1
Xcc-8004.664.1: Xcc-8004.664.1 - FIG01211909: hypothetical protein, at 607,319 to 607,762
Xcc-8004.664.1
Xcc-8004.665.1: Xcc-8004.665.1 - FIG01211711: hypothetical protein, at 607,759 to 609,267
Xcc-8004.665.1
Position (kb) 605
606
607
608 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 605.293 kb on + strand, within Xcc-8004.662.1 at 605.293 kb on + strand, within Xcc-8004.662.1 at 605.294 kb on - strand, within Xcc-8004.662.1 at 605.294 kb on - strand, within Xcc-8004.662.1 at 605.294 kb on - strand, within Xcc-8004.662.1 at 605.294 kb on - strand, within Xcc-8004.662.1 at 605.294 kb on - strand, within Xcc-8004.662.1 at 605.294 kb on - strand, within Xcc-8004.662.1 at 605.294 kb on - strand, within Xcc-8004.662.1 at 605.294 kb on - strand, within Xcc-8004.662.1 at 605.299 kb on + strand, within Xcc-8004.662.1 at 605.300 kb on - strand, within Xcc-8004.662.1 at 605.353 kb on + strand, within Xcc-8004.662.1 at 605.353 kb on + strand, within Xcc-8004.662.1 at 605.353 kb on + strand, within Xcc-8004.662.1 at 605.354 kb on - strand, within Xcc-8004.662.1 at 605.354 kb on - strand, within Xcc-8004.662.1 at 605.491 kb on + strand, within Xcc-8004.662.1 at 605.786 kb on - strand, within Xcc-8004.662.1 at 605.786 kb on - strand, within Xcc-8004.662.1 at 606.077 kb on + strand at 606.078 kb on - strand at 606.078 kb on - strand at 606.078 kb on - strand at 606.204 kb on - strand, within Xcc-8004.663.1 at 606.301 kb on - strand, within Xcc-8004.663.1 at 606.376 kb on - strand, within Xcc-8004.663.1 at 606.511 kb on - strand, within Xcc-8004.663.1 at 606.560 kb on - strand, within Xcc-8004.663.1 at 606.560 kb on - strand, within Xcc-8004.663.1 at 606.652 kb on - strand, within Xcc-8004.663.1 at 606.756 kb on + strand, within Xcc-8004.663.1 at 606.757 kb on - strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.829 kb on - strand, within Xcc-8004.663.1 at 606.829 kb on - strand, within Xcc-8004.663.1 at 606.829 kb on - strand, within Xcc-8004.663.1 at 606.837 kb on + strand, within Xcc-8004.663.1 at 607.831 kb on + strand at 607.831 kb on + strand at 607.832 kb on - strand at 607.832 kb on - strand at 607.925 kb on + strand, within Xcc-8004.665.1 at 607.925 kb on + strand, within Xcc-8004.665.1 at 607.925 kb on + strand, within Xcc-8004.665.1 at 607.926 kb on - strand, within Xcc-8004.665.1 at 607.926 kb on - strand, within Xcc-8004.665.1 at 607.926 kb on - strand, within Xcc-8004.665.1 at 607.934 kb on - strand, within Xcc-8004.665.1 at 608.035 kb on + strand, within Xcc-8004.665.1 at 608.153 kb on - strand, within Xcc-8004.665.1 at 608.268 kb on - strand, within Xcc-8004.665.1 at 608.268 kb on - strand, within Xcc-8004.665.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 605,293 + Xcc-8004.662.1 0.60 -0.8 605,293 + Xcc-8004.662.1 0.60 -2.8 605,294 - Xcc-8004.662.1 0.60 -0.8 605,294 - Xcc-8004.662.1 0.60 -2.0 605,294 - Xcc-8004.662.1 0.60 +0.7 605,294 - Xcc-8004.662.1 0.60 +3.0 605,294 - Xcc-8004.662.1 0.60 +0.0 605,294 - Xcc-8004.662.1 0.60 +0.8 605,294 - Xcc-8004.662.1 0.60 -0.6 605,294 - Xcc-8004.662.1 0.60 +0.4 605,299 + Xcc-8004.662.1 0.61 +1.2 605,300 - Xcc-8004.662.1 0.61 -0.8 605,353 + Xcc-8004.662.1 0.64 +1.7 605,353 + Xcc-8004.662.1 0.64 -1.0 605,353 + Xcc-8004.662.1 0.64 +2.1 605,354 - Xcc-8004.662.1 0.64 -0.8 605,354 - Xcc-8004.662.1 0.64 -1.3 605,491 + Xcc-8004.662.1 0.72 -2.8 605,786 - Xcc-8004.662.1 0.88 +0.8 605,786 - Xcc-8004.662.1 0.88 +0.5 606,077 + -1.7 606,078 - +0.8 606,078 - +1.4 606,078 - +0.3 606,204 - Xcc-8004.663.1 0.16 -1.2 606,301 - Xcc-8004.663.1 0.23 -0.7 606,376 - Xcc-8004.663.1 0.29 +0.4 606,511 - Xcc-8004.663.1 0.39 +2.6 606,560 - Xcc-8004.663.1 0.43 -1.6 606,560 - Xcc-8004.663.1 0.43 +0.9 606,652 - Xcc-8004.663.1 0.50 +1.0 606,756 + Xcc-8004.663.1 0.58 -0.4 606,757 - Xcc-8004.663.1 0.58 +0.3 606,828 + Xcc-8004.663.1 0.63 -1.0 606,828 + Xcc-8004.663.1 0.63 -1.3 606,828 + Xcc-8004.663.1 0.63 +1.0 606,828 + Xcc-8004.663.1 0.63 +0.8 606,828 + Xcc-8004.663.1 0.63 +0.8 606,828 + Xcc-8004.663.1 0.63 +0.5 606,829 - Xcc-8004.663.1 0.63 +1.2 606,829 - Xcc-8004.663.1 0.63 +4.3 606,829 - Xcc-8004.663.1 0.63 +1.6 606,837 + Xcc-8004.663.1 0.64 +0.5 607,831 + -0.6 607,831 + -1.5 607,832 - +0.9 607,832 - -1.8 607,925 + Xcc-8004.665.1 0.11 -2.2 607,925 + Xcc-8004.665.1 0.11 -1.1 607,925 + Xcc-8004.665.1 0.11 -0.9 607,926 - Xcc-8004.665.1 0.11 -0.3 607,926 - Xcc-8004.665.1 0.11 -1.5 607,926 - Xcc-8004.665.1 0.11 +2.1 607,934 - Xcc-8004.665.1 0.12 +1.5 608,035 + Xcc-8004.665.1 0.18 +0.5 608,153 - Xcc-8004.665.1 0.26 -0.9 608,268 - Xcc-8004.665.1 0.34 +0.3 608,268 - Xcc-8004.665.1 0.34 -0.4
Or see this region's nucleotide sequence