Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.608.1 and Xcc-8004.609.1 overlap by 1 nucleotides Xcc-8004.609.1 and Xcc-8004.610.1 are separated by 13 nucleotides Xcc-8004.610.1 and Xcc-8004.611.1 are separated by 124 nucleotides
Xcc-8004.608.1: Xcc-8004.608.1 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 560,065 to 561,540
Xcc-8004.608.1
Xcc-8004.609.1: Xcc-8004.609.1 - hypothetical protein, at 561,540 to 562,610
Xcc-8004.609.1
Xcc-8004.610.1: Xcc-8004.610.1 - putative; ORF located using Glimmer/Genemark, at 562,624 to 562,989
Xcc-8004.610.1
Xcc-8004.611.1: Xcc-8004.611.1 - Type I restriction-modification system, restriction subunit R (EC 3.1.21.3), at 563,114 to 566,098
Xcc-8004.611.1
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 560.608 kb on + strand, within Xcc-8004.608.1 at 560.608 kb on + strand, within Xcc-8004.608.1 at 560.608 kb on + strand, within Xcc-8004.608.1 at 560.608 kb on + strand, within Xcc-8004.608.1 at 560.608 kb on + strand, within Xcc-8004.608.1 at 560.609 kb on - strand, within Xcc-8004.608.1 at 560.609 kb on - strand, within Xcc-8004.608.1 at 560.770 kb on + strand, within Xcc-8004.608.1 at 560.770 kb on + strand, within Xcc-8004.608.1 at 560.771 kb on - strand, within Xcc-8004.608.1 at 560.771 kb on - strand, within Xcc-8004.608.1 at 560.851 kb on + strand, within Xcc-8004.608.1 at 560.851 kb on + strand, within Xcc-8004.608.1 at 560.884 kb on + strand, within Xcc-8004.608.1 at 560.884 kb on + strand, within Xcc-8004.608.1 at 560.884 kb on + strand, within Xcc-8004.608.1 at 560.884 kb on + strand, within Xcc-8004.608.1 at 560.884 kb on + strand, within Xcc-8004.608.1 at 560.885 kb on - strand, within Xcc-8004.608.1 at 560.885 kb on - strand, within Xcc-8004.608.1 at 560.891 kb on - strand, within Xcc-8004.608.1 at 560.918 kb on + strand, within Xcc-8004.608.1 at 560.918 kb on + strand, within Xcc-8004.608.1 at 560.918 kb on + strand, within Xcc-8004.608.1 at 561.165 kb on + strand, within Xcc-8004.608.1 at 561.166 kb on - strand, within Xcc-8004.608.1 at 561.331 kb on + strand, within Xcc-8004.608.1 at 561.331 kb on + strand, within Xcc-8004.608.1 at 561.332 kb on - strand, within Xcc-8004.608.1 at 561.349 kb on + strand, within Xcc-8004.608.1 at 561.349 kb on + strand, within Xcc-8004.608.1 at 561.349 kb on + strand, within Xcc-8004.608.1 at 561.350 kb on - strand, within Xcc-8004.608.1 at 561.416 kb on - strand at 561.416 kb on - strand at 561.421 kb on + strand at 561.421 kb on + strand at 561.421 kb on + strand at 561.422 kb on - strand at 561.422 kb on - strand at 561.422 kb on - strand at 561.422 kb on - strand at 561.422 kb on - strand at 561.422 kb on - strand at 561.448 kb on + strand at 561.448 kb on + strand at 561.448 kb on + strand at 561.449 kb on - strand at 561.586 kb on - strand at 562.003 kb on - strand, within Xcc-8004.609.1 at 562.062 kb on + strand, within Xcc-8004.609.1 at 562.063 kb on - strand, within Xcc-8004.609.1 at 562.153 kb on - strand, within Xcc-8004.609.1 at 562.569 kb on + strand at 562.569 kb on + strand at 562.569 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.616 kb on + strand at 562.616 kb on + strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.636 kb on - strand at 562.705 kb on - strand, within Xcc-8004.610.1 at 562.872 kb on + strand, within Xcc-8004.610.1 at 562.872 kb on + strand, within Xcc-8004.610.1 at 562.873 kb on - strand, within Xcc-8004.610.1 at 562.898 kb on - strand, within Xcc-8004.610.1 at 562.994 kb on + strand at 563.113 kb on + strand at 563.114 kb on - strand at 563.175 kb on - strand at 563.310 kb on + strand at 563.310 kb on + strand at 563.351 kb on - strand at 563.446 kb on + strand, within Xcc-8004.611.1 at 563.468 kb on + strand, within Xcc-8004.611.1 at 563.469 kb on - strand, within Xcc-8004.611.1 at 563.469 kb on - strand, within Xcc-8004.611.1 at 563.526 kb on + strand, within Xcc-8004.611.1 at 563.527 kb on - strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.531 kb on - strand, within Xcc-8004.611.1 at 563.531 kb on - strand, within Xcc-8004.611.1 at 563.567 kb on + strand, within Xcc-8004.611.1 at 563.568 kb on - strand, within Xcc-8004.611.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 560,608 + Xcc-8004.608.1 0.37 -2.1 560,608 + Xcc-8004.608.1 0.37 -1.8 560,608 + Xcc-8004.608.1 0.37 -1.6 560,608 + Xcc-8004.608.1 0.37 +3.3 560,608 + Xcc-8004.608.1 0.37 -3.6 560,609 - Xcc-8004.608.1 0.37 -1.1 560,609 - Xcc-8004.608.1 0.37 -0.6 560,770 + Xcc-8004.608.1 0.48 -1.5 560,770 + Xcc-8004.608.1 0.48 -2.4 560,771 - Xcc-8004.608.1 0.48 -1.5 560,771 - Xcc-8004.608.1 0.48 -3.3 560,851 + Xcc-8004.608.1 0.53 +0.9 560,851 + Xcc-8004.608.1 0.53 -2.5 560,884 + Xcc-8004.608.1 0.55 -3.5 560,884 + Xcc-8004.608.1 0.55 -1.6 560,884 + Xcc-8004.608.1 0.55 -1.5 560,884 + Xcc-8004.608.1 0.55 -3.2 560,884 + Xcc-8004.608.1 0.55 +0.2 560,885 - Xcc-8004.608.1 0.56 -2.0 560,885 - Xcc-8004.608.1 0.56 -2.8 560,891 - Xcc-8004.608.1 0.56 -1.7 560,918 + Xcc-8004.608.1 0.58 -0.3 560,918 + Xcc-8004.608.1 0.58 -2.1 560,918 + Xcc-8004.608.1 0.58 -2.8 561,165 + Xcc-8004.608.1 0.75 -2.4 561,166 - Xcc-8004.608.1 0.75 -2.3 561,331 + Xcc-8004.608.1 0.86 -3.4 561,331 + Xcc-8004.608.1 0.86 -1.3 561,332 - Xcc-8004.608.1 0.86 -2.0 561,349 + Xcc-8004.608.1 0.87 +0.1 561,349 + Xcc-8004.608.1 0.87 -2.9 561,349 + Xcc-8004.608.1 0.87 -1.9 561,350 - Xcc-8004.608.1 0.87 -1.6 561,416 - -0.3 561,416 - -0.8 561,421 + -1.3 561,421 + -1.9 561,421 + -1.5 561,422 - -2.8 561,422 - -2.2 561,422 - -0.9 561,422 - -0.6 561,422 - -3.5 561,422 - -1.4 561,448 + +0.1 561,448 + -1.9 561,448 + -0.2 561,449 - -1.8 561,586 - +3.0 562,003 - Xcc-8004.609.1 0.43 +1.5 562,062 + Xcc-8004.609.1 0.49 +0.7 562,063 - Xcc-8004.609.1 0.49 -0.1 562,153 - Xcc-8004.609.1 0.57 +0.8 562,569 + +1.0 562,569 + +1.0 562,569 + -0.0 562,612 + +1.3 562,612 + -0.1 562,612 + +1.2 562,612 + -0.4 562,616 + +0.9 562,616 + +1.7 562,617 - -2.1 562,617 - +0.1 562,617 - -1.8 562,617 - +1.1 562,636 - +1.9 562,705 - Xcc-8004.610.1 0.22 -1.8 562,872 + Xcc-8004.610.1 0.68 +1.6 562,872 + Xcc-8004.610.1 0.68 +1.8 562,873 - Xcc-8004.610.1 0.68 -1.1 562,898 - Xcc-8004.610.1 0.75 +2.1 562,994 + -0.8 563,113 + -1.0 563,114 - -3.2 563,175 - -3.2 563,310 + -0.1 563,310 + +1.0 563,351 - -2.3 563,446 + Xcc-8004.611.1 0.11 -0.7 563,468 + Xcc-8004.611.1 0.12 -1.5 563,469 - Xcc-8004.611.1 0.12 -2.0 563,469 - Xcc-8004.611.1 0.12 -2.4 563,526 + Xcc-8004.611.1 0.14 +1.1 563,527 - Xcc-8004.611.1 0.14 +1.2 563,530 + Xcc-8004.611.1 0.14 +0.1 563,530 + Xcc-8004.611.1 0.14 -2.0 563,530 + Xcc-8004.611.1 0.14 +0.1 563,530 + Xcc-8004.611.1 0.14 +0.9 563,531 - Xcc-8004.611.1 0.14 +1.7 563,531 - Xcc-8004.611.1 0.14 -0.9 563,567 + Xcc-8004.611.1 0.15 +1.0 563,568 - Xcc-8004.611.1 0.15 -3.6
Or see this region's nucleotide sequence