Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.542.1

Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.541.1 and Xcc-8004.542.1 overlap by 4 nucleotidesXcc-8004.542.1 and Xcc-8004.543.1 overlap by 4 nucleotidesXcc-8004.543.1 and Xcc-8004.544.1 are separated by 42 nucleotides Xcc-8004.541.1: Xcc-8004.541.1 - 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25), at 499,745 to 501,676 Xcc-8004.541.1 Xcc-8004.542.1: Xcc-8004.542.1 - Malto-oligosyltrehalose synthase (EC 5.4.99.15), at 501,673 to 504,291 Xcc-8004.542.1 Xcc-8004.543.1: Xcc-8004.543.1 - FIG01210004: hypothetical protein, at 504,288 to 504,476 Xcc-8004.543.1 Xcc-8004.544.1: Xcc-8004.544.1 - Glycogen debranching enzyme (EC 3.2.1.-), at 504,519 to 506,681 Xcc-8004.544.1 Position (kb) 501 502 503 504 505Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 500.814 kb on + strand, within Xcc-8004.541.1at 500.814 kb on + strand, within Xcc-8004.541.1at 500.815 kb on - strand, within Xcc-8004.541.1at 500.815 kb on - strand, within Xcc-8004.541.1at 500.888 kb on + strand, within Xcc-8004.541.1at 500.889 kb on - strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.928 kb on - strand, within Xcc-8004.541.1at 500.928 kb on - strand, within Xcc-8004.541.1at 500.928 kb on - strand, within Xcc-8004.541.1at 500.928 kb on - strand, within Xcc-8004.541.1at 500.929 kb on + strand, within Xcc-8004.541.1at 500.929 kb on + strand, within Xcc-8004.541.1at 500.930 kb on - strand, within Xcc-8004.541.1at 500.930 kb on - strand, within Xcc-8004.541.1at 500.930 kb on - strand, within Xcc-8004.541.1at 501.044 kb on + strand, within Xcc-8004.541.1at 501.044 kb on + strand, within Xcc-8004.541.1at 501.751 kb on + strandat 501.752 kb on - strandat 501.752 kb on - strandat 501.752 kb on - strandat 501.754 kb on + strandat 501.754 kb on + strandat 501.754 kb on + strandat 501.754 kb on + strandat 501.781 kb on + strandat 501.781 kb on + strandat 501.781 kb on + strandat 501.782 kb on - strandat 501.782 kb on - strandat 501.782 kb on - strandat 501.782 kb on - strandat 501.782 kb on - strandat 501.816 kb on + strandat 501.816 kb on + strandat 501.816 kb on + strandat 501.816 kb on + strandat 501.817 kb on - strandat 501.817 kb on - strandat 501.817 kb on - strandat 501.817 kb on - strandat 502.091 kb on - strand, within Xcc-8004.542.1at 502.091 kb on - strand, within Xcc-8004.542.1at 502.162 kb on + strand, within Xcc-8004.542.1at 502.162 kb on + strand, within Xcc-8004.542.1at 502.163 kb on - strand, within Xcc-8004.542.1at 502.163 kb on - strand, within Xcc-8004.542.1at 502.163 kb on - strand, within Xcc-8004.542.1at 502.163 kb on - strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.241 kb on - strand, within Xcc-8004.542.1at 502.241 kb on - strand, within Xcc-8004.542.1at 502.300 kb on + strand, within Xcc-8004.542.1at 502.501 kb on + strand, within Xcc-8004.542.1at 502.576 kb on + strand, within Xcc-8004.542.1at 502.576 kb on + strand, within Xcc-8004.542.1at 502.577 kb on - strand, within Xcc-8004.542.1at 502.930 kb on + strand, within Xcc-8004.542.1at 502.931 kb on - strand, within Xcc-8004.542.1at 502.931 kb on - strand, within Xcc-8004.542.1at 502.931 kb on - strand, within Xcc-8004.542.1at 502.931 kb on - strand, within Xcc-8004.542.1at 502.931 kb on - strand, within Xcc-8004.542.1at 503.168 kb on - strand, within Xcc-8004.542.1at 503.773 kb on + strand, within Xcc-8004.542.1at 503.836 kb on + strand, within Xcc-8004.542.1at 503.836 kb on + strand, within Xcc-8004.542.1at 503.837 kb on - strand, within Xcc-8004.542.1at 503.984 kb on - strand, within Xcc-8004.542.1at 504.000 kb on - strand, within Xcc-8004.542.1at 504.000 kb on - strand, within Xcc-8004.542.1at 504.236 kb on + strandat 504.236 kb on + strandat 504.237 kb on - strandat 504.337 kb on + strand, within Xcc-8004.543.1at 504.337 kb on + strand, within Xcc-8004.543.1at 504.337 kb on + strand, within Xcc-8004.543.1at 504.337 kb on + strand, within Xcc-8004.543.1at 504.337 kb on + strand, within Xcc-8004.543.1at 504.338 kb on - strand, within Xcc-8004.543.1at 504.338 kb on - strand, within Xcc-8004.543.1at 504.458 kb on + strandat 504.459 kb on - strandat 504.474 kb on + strandat 504.506 kb on + strandat 504.507 kb on - strandat 504.507 kb on - strandat 504.507 kb on - strandat 504.618 kb on + strandat 504.619 kb on - strandat 504.619 kb on - strandat 504.619 kb on - strandat 504.692 kb on - strandat 504.699 kb on + strandat 504.699 kb on + strandat 504.777 kb on + strand, within Xcc-8004.544.1at 504.777 kb on + strand, within Xcc-8004.544.1at 504.777 kb on + strand, within Xcc-8004.544.1at 504.778 kb on - strand, within Xcc-8004.544.1at 504.812 kb on + strand, within Xcc-8004.544.1at 504.813 kb on - strand, within Xcc-8004.544.1at 504.832 kb on - strand, within Xcc-8004.544.1at 504.832 kb on - strand, within Xcc-8004.544.1at 504.882 kb on + strand, within Xcc-8004.544.1at 504.974 kb on + strand, within Xcc-8004.544.1at 504.974 kb on + strand, within Xcc-8004.544.1at 504.975 kb on - strand, within Xcc-8004.544.1at 504.975 kb on - strand, within Xcc-8004.544.1at 504.975 kb on - strand, within Xcc-8004.544.1at 505.026 kb on + strand, within Xcc-8004.544.1at 505.026 kb on + strand, within Xcc-8004.544.1at 505.026 kb on + strand, within Xcc-8004.544.1at 505.026 kb on + strand, within Xcc-8004.544.1at 505.027 kb on - strand, within Xcc-8004.544.1at 505.191 kb on + strand, within Xcc-8004.544.1at 505.191 kb on + strand, within Xcc-8004.544.1at 505.191 kb on + strand, within Xcc-8004.544.1at 505.191 kb on + strand, within Xcc-8004.544.1at 505.192 kb on - strand, within Xcc-8004.544.1at 505.227 kb on + strand, within Xcc-8004.544.1at 505.227 kb on + strand, within Xcc-8004.544.1at 505.263 kb on + strand, within Xcc-8004.544.1at 505.263 kb on + strand, within Xcc-8004.544.1at 505.263 kb on + strand, within Xcc-8004.544.1at 505.263 kb on + strand, within Xcc-8004.544.1at 505.263 kb on + strand, within Xcc-8004.544.1at 505.263 kb on + strand, within Xcc-8004.544.1at 505.264 kb on - strand, within Xcc-8004.544.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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500,814 + Xcc-8004.541.1 0.55 +2.1
500,814 + Xcc-8004.541.1 0.55 -2.4
500,815 - Xcc-8004.541.1 0.55 -1.7
500,815 - Xcc-8004.541.1 0.55 -0.4
500,888 + Xcc-8004.541.1 0.59 +0.8
500,889 - Xcc-8004.541.1 0.59 +2.7
500,927 + Xcc-8004.541.1 0.61 +0.9
500,927 + Xcc-8004.541.1 0.61 -1.0
500,927 + Xcc-8004.541.1 0.61 -2.4
500,927 + Xcc-8004.541.1 0.61 +0.2
500,927 + Xcc-8004.541.1 0.61 +0.6
500,927 + Xcc-8004.541.1 0.61 +0.2
500,928 - Xcc-8004.541.1 0.61 -0.3
500,928 - Xcc-8004.541.1 0.61 +1.7
500,928 - Xcc-8004.541.1 0.61 +0.1
500,928 - Xcc-8004.541.1 0.61 -0.1
500,929 + Xcc-8004.541.1 0.61 -1.2
500,929 + Xcc-8004.541.1 0.61 -1.3
500,930 - Xcc-8004.541.1 0.61 -1.0
500,930 - Xcc-8004.541.1 0.61 -1.3
500,930 - Xcc-8004.541.1 0.61 +0.8
501,044 + Xcc-8004.541.1 0.67 +0.3
501,044 + Xcc-8004.541.1 0.67 -1.1
501,751 + -2.0
501,752 - -1.6
501,752 - -0.4
501,752 - +1.3
501,754 + -3.6
501,754 + -2.4
501,754 + +0.7
501,754 + -2.5
501,781 + -0.5
501,781 + +0.7
501,781 + -1.8
501,782 - +0.8
501,782 - +0.2
501,782 - -0.9
501,782 - +0.2
501,782 - +2.1
501,816 + -3.3
501,816 + -2.3
501,816 + -1.9
501,816 + -1.0
501,817 - +1.1
501,817 - +2.7
501,817 - +0.1
501,817 - +0.1
502,091 - Xcc-8004.542.1 0.16 +0.1
502,091 - Xcc-8004.542.1 0.16 -1.9
502,162 + Xcc-8004.542.1 0.19 -1.7
502,162 + Xcc-8004.542.1 0.19 +1.7
502,163 - Xcc-8004.542.1 0.19 -1.0
502,163 - Xcc-8004.542.1 0.19 +0.2
502,163 - Xcc-8004.542.1 0.19 -0.2
502,163 - Xcc-8004.542.1 0.19 -1.5
502,240 + Xcc-8004.542.1 0.22 -0.9
502,240 + Xcc-8004.542.1 0.22 +0.7
502,240 + Xcc-8004.542.1 0.22 -2.4
502,240 + Xcc-8004.542.1 0.22 -0.7
502,240 + Xcc-8004.542.1 0.22 -0.7
502,241 - Xcc-8004.542.1 0.22 +2.2
502,241 - Xcc-8004.542.1 0.22 +1.1
502,300 + Xcc-8004.542.1 0.24 +0.9
502,501 + Xcc-8004.542.1 0.32 +0.2
502,576 + Xcc-8004.542.1 0.34 +1.2
502,576 + Xcc-8004.542.1 0.34 -2.7
502,577 - Xcc-8004.542.1 0.35 +0.1
502,930 + Xcc-8004.542.1 0.48 +2.5
502,931 - Xcc-8004.542.1 0.48 -2.7
502,931 - Xcc-8004.542.1 0.48 +1.5
502,931 - Xcc-8004.542.1 0.48 -0.9
502,931 - Xcc-8004.542.1 0.48 +0.1
502,931 - Xcc-8004.542.1 0.48 -1.1
503,168 - Xcc-8004.542.1 0.57 +4.1
503,773 + Xcc-8004.542.1 0.80 +1.7
503,836 + Xcc-8004.542.1 0.83 -2.4
503,836 + Xcc-8004.542.1 0.83 +3.6
503,837 - Xcc-8004.542.1 0.83 -0.8
503,984 - Xcc-8004.542.1 0.88 -0.3
504,000 - Xcc-8004.542.1 0.89 +0.4
504,000 - Xcc-8004.542.1 0.89 -0.3
504,236 + -0.9
504,236 + -0.3
504,237 - +3.6
504,337 + Xcc-8004.543.1 0.26 -0.3
504,337 + Xcc-8004.543.1 0.26 +0.8
504,337 + Xcc-8004.543.1 0.26 -2.9
504,337 + Xcc-8004.543.1 0.26 -1.9
504,337 + Xcc-8004.543.1 0.26 +0.5
504,338 - Xcc-8004.543.1 0.26 -0.3
504,338 - Xcc-8004.543.1 0.26 -0.3
504,458 + -0.5
504,459 - +0.3
504,474 + +1.9
504,506 + -0.7
504,507 - -0.6
504,507 - -0.8
504,507 - -1.7
504,618 + -2.0
504,619 - +0.3
504,619 - +1.7
504,619 - +0.1
504,692 - +1.1
504,699 + +0.8
504,699 + -0.8
504,777 + Xcc-8004.544.1 0.12 +1.7
504,777 + Xcc-8004.544.1 0.12 +1.2
504,777 + Xcc-8004.544.1 0.12 -3.4
504,778 - Xcc-8004.544.1 0.12 +0.8
504,812 + Xcc-8004.544.1 0.14 -0.9
504,813 - Xcc-8004.544.1 0.14 -1.1
504,832 - Xcc-8004.544.1 0.14 +2.7
504,832 - Xcc-8004.544.1 0.14 -0.2
504,882 + Xcc-8004.544.1 0.17 +0.4
504,974 + Xcc-8004.544.1 0.21 +1.1
504,974 + Xcc-8004.544.1 0.21 -1.1
504,975 - Xcc-8004.544.1 0.21 +1.4
504,975 - Xcc-8004.544.1 0.21 +1.7
504,975 - Xcc-8004.544.1 0.21 -1.5
505,026 + Xcc-8004.544.1 0.23 +0.4
505,026 + Xcc-8004.544.1 0.23 +0.9
505,026 + Xcc-8004.544.1 0.23 -0.3
505,026 + Xcc-8004.544.1 0.23 +0.3
505,027 - Xcc-8004.544.1 0.23 -1.1
505,191 + Xcc-8004.544.1 0.31 -1.4
505,191 + Xcc-8004.544.1 0.31 -0.0
505,191 + Xcc-8004.544.1 0.31 -0.1
505,191 + Xcc-8004.544.1 0.31 -0.1
505,192 - Xcc-8004.544.1 0.31 -0.1
505,227 + Xcc-8004.544.1 0.33 +2.4
505,227 + Xcc-8004.544.1 0.33 -2.9
505,263 + Xcc-8004.544.1 0.34 -0.5
505,263 + Xcc-8004.544.1 0.34 +2.3
505,263 + Xcc-8004.544.1 0.34 +0.9
505,263 + Xcc-8004.544.1 0.34 +1.3
505,263 + Xcc-8004.544.1 0.34 -1.4
505,263 + Xcc-8004.544.1 0.34 +0.4
505,264 - Xcc-8004.544.1 0.34 -1.5

Or see this region's nucleotide sequence