Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5245.1

Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5243.1 and Xcc-8004.5244.1 are separated by 61 nucleotidesXcc-8004.5244.1 and Xcc-8004.5245.1 are separated by 189 nucleotidesXcc-8004.5245.1 and Xcc-8004.5246.1 overlap by 53 nucleotidesXcc-8004.5246.1 and Xcc-8004.5249.1 are separated by 390 nucleotides Xcc-8004.5243.1: Xcc-8004.5243.1 - Outer membrane lipoprotein, at 4,983,741 to 4,984,289 Xcc-8004.5243.1 Xcc-8004.5244.1: Xcc-8004.5244.1 - FIG01209927: hypothetical protein, at 4,984,351 to 4,984,704 Xcc-8004.5244.1 Xcc-8004.5245.1: Xcc-8004.5245.1 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 4,984,894 to 4,985,718 Xcc-8004.5245.1 Xcc-8004.5246.1: Xcc-8004.5246.1 - FIG01209964: hypothetical protein, at 4,985,666 to 4,985,824 Xcc-8004.5246.1 Xcc-8004.5249.1: Xcc-8004.5249.1 - Putative oxidoreductase SMc00968, at 4,986,215 to 4,987,384 Xcc-8004.5249.1 Position (kb) 4984 4985 4986Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4983.980 kb on + strand, within Xcc-8004.5243.1at 4983.980 kb on + strand, within Xcc-8004.5243.1at 4983.980 kb on + strand, within Xcc-8004.5243.1at 4983.980 kb on + strand, within Xcc-8004.5243.1at 4983.980 kb on + strand, within Xcc-8004.5243.1at 4983.980 kb on + strand, within Xcc-8004.5243.1at 4983.980 kb on + strand, within Xcc-8004.5243.1at 4983.980 kb on + strand, within Xcc-8004.5243.1at 4983.981 kb on - strand, within Xcc-8004.5243.1at 4983.981 kb on - strand, within Xcc-8004.5243.1at 4983.981 kb on - strand, within Xcc-8004.5243.1at 4983.981 kb on - strand, within Xcc-8004.5243.1at 4984.102 kb on - strand, within Xcc-8004.5243.1at 4984.102 kb on - strand, within Xcc-8004.5243.1at 4984.102 kb on - strand, within Xcc-8004.5243.1at 4984.102 kb on - strand, within Xcc-8004.5243.1at 4984.128 kb on + strand, within Xcc-8004.5243.1at 4984.129 kb on - strand, within Xcc-8004.5243.1at 4984.129 kb on - strand, within Xcc-8004.5243.1at 4984.165 kb on - strand, within Xcc-8004.5243.1at 4984.165 kb on - strand, within Xcc-8004.5243.1at 4984.165 kb on - strand, within Xcc-8004.5243.1at 4984.165 kb on - strand, within Xcc-8004.5243.1at 4984.173 kb on + strand, within Xcc-8004.5243.1at 4984.173 kb on + strand, within Xcc-8004.5243.1at 4984.173 kb on + strand, within Xcc-8004.5243.1at 4984.173 kb on + strand, within Xcc-8004.5243.1at 4984.173 kb on + strand, within Xcc-8004.5243.1at 4984.174 kb on - strand, within Xcc-8004.5243.1at 4984.174 kb on - strand, within Xcc-8004.5243.1at 4984.174 kb on - strand, within Xcc-8004.5243.1at 4984.174 kb on - strand, within Xcc-8004.5243.1at 4984.174 kb on - strand, within Xcc-8004.5243.1at 4984.174 kb on - strand, within Xcc-8004.5243.1at 4984.174 kb on - strand, within Xcc-8004.5243.1at 4984.174 kb on - strand, within Xcc-8004.5243.1at 4984.174 kb on - strand, within Xcc-8004.5243.1at 4984.175 kb on + strand, within Xcc-8004.5243.1at 4984.175 kb on + strand, within Xcc-8004.5243.1at 4984.176 kb on - strand, within Xcc-8004.5243.1at 4984.176 kb on - strand, within Xcc-8004.5243.1at 4984.176 kb on - strand, within Xcc-8004.5243.1at 4984.209 kb on + strand, within Xcc-8004.5243.1at 4984.245 kb on + strandat 4984.246 kb on - strandat 4984.246 kb on - strandat 4984.246 kb on - strandat 4984.454 kb on + strand, within Xcc-8004.5244.1at 4984.454 kb on + strand, within Xcc-8004.5244.1at 4984.454 kb on + strand, within Xcc-8004.5244.1at 4984.454 kb on + strand, within Xcc-8004.5244.1at 4984.454 kb on + strand, within Xcc-8004.5244.1at 4984.454 kb on + strand, within Xcc-8004.5244.1at 4984.455 kb on - strand, within Xcc-8004.5244.1at 4984.455 kb on - strand, within Xcc-8004.5244.1at 4984.475 kb on + strand, within Xcc-8004.5244.1at 4984.475 kb on + strand, within Xcc-8004.5244.1at 4984.476 kb on - strand, within Xcc-8004.5244.1at 4984.476 kb on - strand, within Xcc-8004.5244.1at 4984.515 kb on - strand, within Xcc-8004.5244.1at 4984.747 kb on - strandat 4984.747 kb on - strandat 4984.825 kb on + strandat 4984.976 kb on + strandat 4984.976 kb on + strandat 4984.976 kb on + strandat 4985.000 kb on + strand, within Xcc-8004.5245.1at 4985.171 kb on + strand, within Xcc-8004.5245.1at 4985.171 kb on + strand, within Xcc-8004.5245.1at 4985.171 kb on + strand, within Xcc-8004.5245.1at 4985.171 kb on + strand, within Xcc-8004.5245.1at 4985.171 kb on + strand, within Xcc-8004.5245.1at 4985.171 kb on + strand, within Xcc-8004.5245.1at 4985.172 kb on - strand, within Xcc-8004.5245.1at 4985.172 kb on - strand, within Xcc-8004.5245.1at 4985.172 kb on - strand, within Xcc-8004.5245.1at 4985.172 kb on - strand, within Xcc-8004.5245.1at 4985.172 kb on - strand, within Xcc-8004.5245.1at 4985.172 kb on - strand, within Xcc-8004.5245.1at 4985.172 kb on - strand, within Xcc-8004.5245.1at 4985.210 kb on + strand, within Xcc-8004.5245.1at 4985.210 kb on + strand, within Xcc-8004.5245.1at 4985.210 kb on + strand, within Xcc-8004.5245.1at 4985.210 kb on + strand, within Xcc-8004.5245.1at 4985.210 kb on + strand, within Xcc-8004.5245.1at 4985.211 kb on - strand, within Xcc-8004.5245.1at 4985.211 kb on - strand, within Xcc-8004.5245.1at 4985.211 kb on - strand, within Xcc-8004.5245.1at 4985.211 kb on - strand, within Xcc-8004.5245.1at 4985.327 kb on + strand, within Xcc-8004.5245.1at 4985.327 kb on + strand, within Xcc-8004.5245.1at 4985.327 kb on + strand, within Xcc-8004.5245.1at 4985.328 kb on - strand, within Xcc-8004.5245.1at 4985.328 kb on - strand, within Xcc-8004.5245.1at 4985.387 kb on + strand, within Xcc-8004.5245.1at 4985.388 kb on - strand, within Xcc-8004.5245.1at 4985.388 kb on - strand, within Xcc-8004.5245.1at 4985.388 kb on - strand, within Xcc-8004.5245.1at 4985.388 kb on - strand, within Xcc-8004.5245.1at 4985.469 kb on + strand, within Xcc-8004.5245.1at 4985.469 kb on + strand, within Xcc-8004.5245.1at 4985.469 kb on + strand, within Xcc-8004.5245.1at 4985.469 kb on + strand, within Xcc-8004.5245.1at 4985.470 kb on - strand, within Xcc-8004.5245.1at 4985.470 kb on - strand, within Xcc-8004.5245.1at 4985.470 kb on - strand, within Xcc-8004.5245.1at 4985.470 kb on - strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.885 kb on + strandat 4985.902 kb on - strandat 4985.902 kb on - strandat 4985.902 kb on - strandat 4985.902 kb on - strandat 4985.970 kb on + strandat 4985.970 kb on + strandat 4985.970 kb on + strandat 4985.970 kb on + strandat 4986.035 kb on + strandat 4986.035 kb on + strandat 4986.035 kb on + strandat 4986.044 kb on + strandat 4986.044 kb on + strandat 4986.044 kb on + strandat 4986.044 kb on + strandat 4986.044 kb on + strandat 4986.087 kb on + strandat 4986.087 kb on + strandat 4986.087 kb on + strandat 4986.088 kb on - strandat 4986.088 kb on - strandat 4986.088 kb on - strandat 4986.088 kb on - strandat 4986.122 kb on - strandat 4986.182 kb on - strandat 4986.182 kb on - strandat 4986.182 kb on - strandat 4986.216 kb on + strandat 4986.455 kb on + strand, within Xcc-8004.5249.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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4,983,980 + Xcc-8004.5243.1 0.44 +1.0
4,983,980 + Xcc-8004.5243.1 0.44 -1.0
4,983,980 + Xcc-8004.5243.1 0.44 +1.3
4,983,980 + Xcc-8004.5243.1 0.44 +0.6
4,983,980 + Xcc-8004.5243.1 0.44 -0.2
4,983,980 + Xcc-8004.5243.1 0.44 -0.7
4,983,980 + Xcc-8004.5243.1 0.44 +2.3
4,983,980 + Xcc-8004.5243.1 0.44 +0.2
4,983,981 - Xcc-8004.5243.1 0.44 -1.2
4,983,981 - Xcc-8004.5243.1 0.44 -0.0
4,983,981 - Xcc-8004.5243.1 0.44 +0.6
4,983,981 - Xcc-8004.5243.1 0.44 +1.8
4,984,102 - Xcc-8004.5243.1 0.66 -0.1
4,984,102 - Xcc-8004.5243.1 0.66 +6.4
4,984,102 - Xcc-8004.5243.1 0.66 -0.4
4,984,102 - Xcc-8004.5243.1 0.66 -1.0
4,984,128 + Xcc-8004.5243.1 0.70 -1.7
4,984,129 - Xcc-8004.5243.1 0.71 +1.6
4,984,129 - Xcc-8004.5243.1 0.71 -2.4
4,984,165 - Xcc-8004.5243.1 0.77 -1.4
4,984,165 - Xcc-8004.5243.1 0.77 +2.5
4,984,165 - Xcc-8004.5243.1 0.77 -1.7
4,984,165 - Xcc-8004.5243.1 0.77 -0.5
4,984,173 + Xcc-8004.5243.1 0.79 +0.4
4,984,173 + Xcc-8004.5243.1 0.79 +0.1
4,984,173 + Xcc-8004.5243.1 0.79 -2.7
4,984,173 + Xcc-8004.5243.1 0.79 +1.8
4,984,173 + Xcc-8004.5243.1 0.79 -0.2
4,984,174 - Xcc-8004.5243.1 0.79 +1.8
4,984,174 - Xcc-8004.5243.1 0.79 -1.7
4,984,174 - Xcc-8004.5243.1 0.79 +0.8
4,984,174 - Xcc-8004.5243.1 0.79 +2.8
4,984,174 - Xcc-8004.5243.1 0.79 -0.8
4,984,174 - Xcc-8004.5243.1 0.79 +0.2
4,984,174 - Xcc-8004.5243.1 0.79 -0.9
4,984,174 - Xcc-8004.5243.1 0.79 -1.0
4,984,174 - Xcc-8004.5243.1 0.79 +1.1
4,984,175 + Xcc-8004.5243.1 0.79 -1.1
4,984,175 + Xcc-8004.5243.1 0.79 -0.7
4,984,176 - Xcc-8004.5243.1 0.79 +0.2
4,984,176 - Xcc-8004.5243.1 0.79 -0.8
4,984,176 - Xcc-8004.5243.1 0.79 +2.4
4,984,209 + Xcc-8004.5243.1 0.85 +0.0
4,984,245 + -0.7
4,984,246 - -0.4
4,984,246 - +2.6
4,984,246 - +0.8
4,984,454 + Xcc-8004.5244.1 0.29 +0.2
4,984,454 + Xcc-8004.5244.1 0.29 -1.2
4,984,454 + Xcc-8004.5244.1 0.29 -3.0
4,984,454 + Xcc-8004.5244.1 0.29 +2.6
4,984,454 + Xcc-8004.5244.1 0.29 +1.4
4,984,454 + Xcc-8004.5244.1 0.29 +0.4
4,984,455 - Xcc-8004.5244.1 0.29 -0.4
4,984,455 - Xcc-8004.5244.1 0.29 -1.4
4,984,475 + Xcc-8004.5244.1 0.35 -0.1
4,984,475 + Xcc-8004.5244.1 0.35 +0.4
4,984,476 - Xcc-8004.5244.1 0.35 +2.5
4,984,476 - Xcc-8004.5244.1 0.35 +0.6
4,984,515 - Xcc-8004.5244.1 0.46 -1.2
4,984,747 - +3.0
4,984,747 - -1.7
4,984,825 + +3.5
4,984,976 + -1.2
4,984,976 + -0.5
4,984,976 + +3.2
4,985,000 + Xcc-8004.5245.1 0.13 +0.0
4,985,171 + Xcc-8004.5245.1 0.34 -3.7
4,985,171 + Xcc-8004.5245.1 0.34 +0.6
4,985,171 + Xcc-8004.5245.1 0.34 -0.2
4,985,171 + Xcc-8004.5245.1 0.34 -1.7
4,985,171 + Xcc-8004.5245.1 0.34 -0.2
4,985,171 + Xcc-8004.5245.1 0.34 +2.1
4,985,172 - Xcc-8004.5245.1 0.34 -1.5
4,985,172 - Xcc-8004.5245.1 0.34 +2.8
4,985,172 - Xcc-8004.5245.1 0.34 -0.2
4,985,172 - Xcc-8004.5245.1 0.34 -0.4
4,985,172 - Xcc-8004.5245.1 0.34 -3.2
4,985,172 - Xcc-8004.5245.1 0.34 -1.2
4,985,172 - Xcc-8004.5245.1 0.34 +1.6
4,985,210 + Xcc-8004.5245.1 0.38 -1.5
4,985,210 + Xcc-8004.5245.1 0.38 -0.4
4,985,210 + Xcc-8004.5245.1 0.38 +1.2
4,985,210 + Xcc-8004.5245.1 0.38 -0.4
4,985,210 + Xcc-8004.5245.1 0.38 -3.1
4,985,211 - Xcc-8004.5245.1 0.38 -3.0
4,985,211 - Xcc-8004.5245.1 0.38 -1.9
4,985,211 - Xcc-8004.5245.1 0.38 +2.1
4,985,211 - Xcc-8004.5245.1 0.38 -2.6
4,985,327 + Xcc-8004.5245.1 0.52 -0.4
4,985,327 + Xcc-8004.5245.1 0.52 +0.2
4,985,327 + Xcc-8004.5245.1 0.52 +0.6
4,985,328 - Xcc-8004.5245.1 0.53 +1.7
4,985,328 - Xcc-8004.5245.1 0.53 -3.1
4,985,387 + Xcc-8004.5245.1 0.60 -0.8
4,985,388 - Xcc-8004.5245.1 0.60 +1.2
4,985,388 - Xcc-8004.5245.1 0.60 +1.2
4,985,388 - Xcc-8004.5245.1 0.60 +1.6
4,985,388 - Xcc-8004.5245.1 0.60 +0.0
4,985,469 + Xcc-8004.5245.1 0.70 -2.1
4,985,469 + Xcc-8004.5245.1 0.70 -0.2
4,985,469 + Xcc-8004.5245.1 0.70 -0.4
4,985,469 + Xcc-8004.5245.1 0.70 -1.5
4,985,470 - Xcc-8004.5245.1 0.70 +2.2
4,985,470 - Xcc-8004.5245.1 0.70 -1.8
4,985,470 - Xcc-8004.5245.1 0.70 -1.6
4,985,470 - Xcc-8004.5245.1 0.70 +0.4
4,985,609 + Xcc-8004.5245.1 0.87 -2.3
4,985,609 + Xcc-8004.5245.1 0.87 -1.4
4,985,609 + Xcc-8004.5245.1 0.87 +0.0
4,985,609 + Xcc-8004.5245.1 0.87 -0.4
4,985,609 + Xcc-8004.5245.1 0.87 -0.7
4,985,609 + Xcc-8004.5245.1 0.87 -0.8
4,985,609 + Xcc-8004.5245.1 0.87 +0.7
4,985,609 + Xcc-8004.5245.1 0.87 -0.6
4,985,609 + Xcc-8004.5245.1 0.87 +1.9
4,985,609 + Xcc-8004.5245.1 0.87 -1.5
4,985,609 + Xcc-8004.5245.1 0.87 -3.2
4,985,609 + Xcc-8004.5245.1 0.87 -1.1
4,985,609 + Xcc-8004.5245.1 0.87 -1.1
4,985,609 + Xcc-8004.5245.1 0.87 -0.2
4,985,610 - Xcc-8004.5245.1 0.87 +0.0
4,985,610 - Xcc-8004.5245.1 0.87 +0.0
4,985,610 - Xcc-8004.5245.1 0.87 +1.2
4,985,610 - Xcc-8004.5245.1 0.87 -1.8
4,985,610 - Xcc-8004.5245.1 0.87 +2.9
4,985,610 - Xcc-8004.5245.1 0.87 +0.2
4,985,610 - Xcc-8004.5245.1 0.87 +1.5
4,985,610 - Xcc-8004.5245.1 0.87 +1.2
4,985,610 - Xcc-8004.5245.1 0.87 +2.1
4,985,610 - Xcc-8004.5245.1 0.87 -0.5
4,985,610 - Xcc-8004.5245.1 0.87 +5.9
4,985,610 - Xcc-8004.5245.1 0.87 -2.7
4,985,885 + -1.4
4,985,902 - -2.2
4,985,902 - -0.2
4,985,902 - -0.4
4,985,902 - +0.8
4,985,970 + +1.7
4,985,970 + -1.8
4,985,970 + -0.6
4,985,970 + -1.7
4,986,035 + -3.1
4,986,035 + -0.8
4,986,035 + -0.4
4,986,044 + +1.3
4,986,044 + +0.0
4,986,044 + +1.6
4,986,044 + -1.0
4,986,044 + +1.5
4,986,087 + -0.7
4,986,087 + +1.6
4,986,087 + +0.9
4,986,088 - +0.4
4,986,088 - -0.4
4,986,088 - +0.2
4,986,088 - +2.0
4,986,122 - -0.2
4,986,182 - -0.1
4,986,182 - -0.8
4,986,182 - -1.8
4,986,216 + +2.3
4,986,455 + Xcc-8004.5249.1 0.21 +1.2

Or see this region's nucleotide sequence