Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.416.1 and Xcc-8004.417.1 are separated by 218 nucleotides Xcc-8004.417.1 and Xcc-8004.418.1 are separated by 137 nucleotides Xcc-8004.418.1 and Xcc-8004.419.1 are separated by 2 nucleotides Xcc-8004.419.1 and Xcc-8004.420.1 overlap by 9 nucleotides Xcc-8004.420.1 and Xcc-8004.421.1 overlap by 41 nucleotides
Xcc-8004.416.1: Xcc-8004.416.1 - AttT protein, at 402,049 to 402,507
Xcc-8004.416.1
Xcc-8004.417.1: Xcc-8004.417.1 - hypothetical protein, at 402,726 to 403,127
Xcc-8004.417.1
Xcc-8004.418.1: Xcc-8004.418.1 - hypothetical protein, at 403,265 to 403,720
Xcc-8004.418.1
Xcc-8004.419.1: Xcc-8004.419.1 - putative; ORF located using Glimmer/Genemark, at 403,723 to 404,553
Xcc-8004.419.1
Xcc-8004.420.1: Xcc-8004.420.1 - Xanthomonadin biosynthesis related protein, at 404,545 to 404,637
Xcc-8004.420.1
Xcc-8004.421.1: Xcc-8004.421.1 - Xanthomonadin biosynthesis related protein, at 404,597 to 404,722
Xcc-8004.421.1
Position (kb) 403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 402.478 kb on + strand at 402.488 kb on + strand at 402.489 kb on - strand at 402.522 kb on - strand at 402.579 kb on + strand at 402.579 kb on + strand at 402.594 kb on + strand at 402.744 kb on + strand at 402.842 kb on + strand, within Xcc-8004.417.1 at 402.843 kb on - strand, within Xcc-8004.417.1 at 402.845 kb on + strand, within Xcc-8004.417.1 at 402.845 kb on + strand, within Xcc-8004.417.1 at 402.846 kb on - strand, within Xcc-8004.417.1 at 402.846 kb on - strand, within Xcc-8004.417.1 at 403.013 kb on + strand, within Xcc-8004.417.1 at 403.014 kb on - strand, within Xcc-8004.417.1 at 403.110 kb on + strand at 403.221 kb on + strand at 403.221 kb on + strand at 403.251 kb on - strand at 403.258 kb on + strand at 403.259 kb on - strand at 403.259 kb on - strand at 403.260 kb on + strand at 403.260 kb on + strand at 403.261 kb on - strand at 403.373 kb on + strand, within Xcc-8004.418.1 at 403.385 kb on + strand, within Xcc-8004.418.1 at 403.386 kb on - strand, within Xcc-8004.418.1 at 403.386 kb on - strand, within Xcc-8004.418.1 at 403.386 kb on - strand, within Xcc-8004.418.1 at 403.409 kb on + strand, within Xcc-8004.418.1 at 403.409 kb on + strand, within Xcc-8004.418.1 at 403.409 kb on + strand, within Xcc-8004.418.1 at 403.409 kb on + strand, within Xcc-8004.418.1 at 403.410 kb on - strand, within Xcc-8004.418.1 at 403.410 kb on - strand, within Xcc-8004.418.1 at 403.410 kb on - strand, within Xcc-8004.418.1 at 403.413 kb on + strand, within Xcc-8004.418.1 at 403.413 kb on + strand, within Xcc-8004.418.1 at 403.413 kb on + strand, within Xcc-8004.418.1 at 403.414 kb on - strand, within Xcc-8004.418.1 at 403.414 kb on - strand, within Xcc-8004.418.1 at 403.414 kb on - strand, within Xcc-8004.418.1 at 403.417 kb on + strand, within Xcc-8004.418.1 at 403.418 kb on - strand, within Xcc-8004.418.1 at 403.418 kb on - strand, within Xcc-8004.418.1 at 403.462 kb on + strand, within Xcc-8004.418.1 at 403.464 kb on + strand, within Xcc-8004.418.1 at 403.465 kb on - strand, within Xcc-8004.418.1 at 403.465 kb on - strand, within Xcc-8004.418.1 at 403.465 kb on - strand, within Xcc-8004.418.1 at 403.560 kb on + strand, within Xcc-8004.418.1 at 403.582 kb on + strand, within Xcc-8004.418.1 at 403.582 kb on + strand, within Xcc-8004.418.1 at 403.608 kb on + strand, within Xcc-8004.418.1 at 403.609 kb on - strand, within Xcc-8004.418.1 at 403.720 kb on + strand at 403.720 kb on + strand at 403.721 kb on - strand at 403.724 kb on + strand at 403.725 kb on - strand at 403.725 kb on - strand at 403.728 kb on - strand at 403.728 kb on - strand at 403.728 kb on - strand at 403.734 kb on + strand at 403.735 kb on - strand at 403.735 kb on - strand at 403.735 kb on - strand at 403.742 kb on + strand at 403.804 kb on + strand at 403.805 kb on - strand at 403.829 kb on + strand, within Xcc-8004.419.1 at 403.829 kb on + strand, within Xcc-8004.419.1 at 403.911 kb on + strand, within Xcc-8004.419.1 at 403.912 kb on - strand, within Xcc-8004.419.1 at 403.912 kb on - strand, within Xcc-8004.419.1 at 403.990 kb on - strand, within Xcc-8004.419.1 at 404.071 kb on + strand, within Xcc-8004.419.1 at 404.071 kb on + strand, within Xcc-8004.419.1 at 404.071 kb on + strand, within Xcc-8004.419.1 at 404.072 kb on - strand, within Xcc-8004.419.1 at 404.095 kb on + strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.189 kb on + strand, within Xcc-8004.419.1 at 404.396 kb on + strand, within Xcc-8004.419.1 at 404.397 kb on - strand, within Xcc-8004.419.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.703 kb on - strand, within Xcc-8004.421.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 402,478 + +0.8 402,488 + -0.5 402,489 - +0.1 402,522 - -0.2 402,579 + -0.5 402,579 + +1.0 402,594 + +1.7 402,744 + +2.7 402,842 + Xcc-8004.417.1 0.29 +1.3 402,843 - Xcc-8004.417.1 0.29 +0.7 402,845 + Xcc-8004.417.1 0.30 +1.2 402,845 + Xcc-8004.417.1 0.30 +0.7 402,846 - Xcc-8004.417.1 0.30 +1.1 402,846 - Xcc-8004.417.1 0.30 -0.9 403,013 + Xcc-8004.417.1 0.71 -0.3 403,014 - Xcc-8004.417.1 0.72 -2.9 403,110 + +0.6 403,221 + -1.1 403,221 + -2.0 403,251 - -0.0 403,258 + +2.2 403,259 - +0.2 403,259 - -0.5 403,260 + -0.5 403,260 + -0.1 403,261 - -0.6 403,373 + Xcc-8004.418.1 0.24 +0.8 403,385 + Xcc-8004.418.1 0.26 -0.5 403,386 - Xcc-8004.418.1 0.27 +2.0 403,386 - Xcc-8004.418.1 0.27 +1.7 403,386 - Xcc-8004.418.1 0.27 -0.4 403,409 + Xcc-8004.418.1 0.32 -0.1 403,409 + Xcc-8004.418.1 0.32 -1.2 403,409 + Xcc-8004.418.1 0.32 -0.4 403,409 + Xcc-8004.418.1 0.32 +3.4 403,410 - Xcc-8004.418.1 0.32 -0.8 403,410 - Xcc-8004.418.1 0.32 -1.6 403,410 - Xcc-8004.418.1 0.32 -2.5 403,413 + Xcc-8004.418.1 0.32 +0.6 403,413 + Xcc-8004.418.1 0.32 +0.7 403,413 + Xcc-8004.418.1 0.32 -1.9 403,414 - Xcc-8004.418.1 0.33 -0.5 403,414 - Xcc-8004.418.1 0.33 +0.9 403,414 - Xcc-8004.418.1 0.33 +0.8 403,417 + Xcc-8004.418.1 0.33 +1.9 403,418 - Xcc-8004.418.1 0.34 -2.4 403,418 - Xcc-8004.418.1 0.34 +1.4 403,462 + Xcc-8004.418.1 0.43 -0.1 403,464 + Xcc-8004.418.1 0.44 +1.7 403,465 - Xcc-8004.418.1 0.44 -0.6 403,465 - Xcc-8004.418.1 0.44 -1.9 403,465 - Xcc-8004.418.1 0.44 +1.7 403,560 + Xcc-8004.418.1 0.65 +2.1 403,582 + Xcc-8004.418.1 0.70 -0.5 403,582 + Xcc-8004.418.1 0.70 -0.3 403,608 + Xcc-8004.418.1 0.75 -1.0 403,609 - Xcc-8004.418.1 0.75 -1.4 403,720 + -1.8 403,720 + +1.1 403,721 - -0.3 403,724 + -0.3 403,725 - -1.6 403,725 - -2.8 403,728 - -1.8 403,728 - -1.0 403,728 - +1.7 403,734 + -1.9 403,735 - +2.7 403,735 - -1.6 403,735 - -1.2 403,742 + +1.4 403,804 + -0.5 403,805 - -1.1 403,829 + Xcc-8004.419.1 0.13 +2.0 403,829 + Xcc-8004.419.1 0.13 -1.6 403,911 + Xcc-8004.419.1 0.23 +3.8 403,912 - Xcc-8004.419.1 0.23 -0.1 403,912 - Xcc-8004.419.1 0.23 +0.0 403,990 - Xcc-8004.419.1 0.32 -1.3 404,071 + Xcc-8004.419.1 0.42 +1.8 404,071 + Xcc-8004.419.1 0.42 -2.6 404,071 + Xcc-8004.419.1 0.42 +2.3 404,072 - Xcc-8004.419.1 0.42 -0.3 404,095 + Xcc-8004.419.1 0.45 +0.3 404,096 - Xcc-8004.419.1 0.45 -0.5 404,096 - Xcc-8004.419.1 0.45 +0.1 404,096 - Xcc-8004.419.1 0.45 +0.9 404,096 - Xcc-8004.419.1 0.45 -0.6 404,096 - Xcc-8004.419.1 0.45 +0.7 404,096 - Xcc-8004.419.1 0.45 +0.5 404,189 + Xcc-8004.419.1 0.56 -2.7 404,396 + Xcc-8004.419.1 0.81 +0.8 404,397 - Xcc-8004.419.1 0.81 -2.0 404,681 + Xcc-8004.421.1 0.67 +1.4 404,681 + Xcc-8004.421.1 0.67 -2.5 404,681 + Xcc-8004.421.1 0.67 -1.5 404,681 + Xcc-8004.421.1 0.67 +0.8 404,681 + Xcc-8004.421.1 0.67 +0.6 404,703 - Xcc-8004.421.1 0.84 -0.6
Or see this region's nucleotide sequence