Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4090.1 and Xcc-8004.4091.1 overlap by 53 nucleotides Xcc-8004.4091.1 and Xcc-8004.4092.1 are separated by 17 nucleotides Xcc-8004.4092.1 and Xcc-8004.4093.1 are separated by 189 nucleotides
Xcc-8004.4090.1: Xcc-8004.4090.1 - FIG01211355: hypothetical protein, at 3,949,175 to 3,949,570
Xcc-8004.4090.1
Xcc-8004.4091.1: Xcc-8004.4091.1 - Pseudouridylate synthase, at 3,949,518 to 3,950,375
Xcc-8004.4091.1
Xcc-8004.4092.1: Xcc-8004.4092.1 - FIG01209901: hypothetical protein, at 3,950,393 to 3,950,905
Xcc-8004.4092.1
Xcc-8004.4093.1: Xcc-8004.4093.1 - Outer membrane protein assembly factor YaeT precursor, at 3,951,095 to 3,952,192
Xcc-8004.4093.1
Position (kb) 3950
3951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3950.017 kb on + strand, within Xcc-8004.4091.1 at 3950.017 kb on + strand, within Xcc-8004.4091.1 at 3950.017 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.188 kb on - strand, within Xcc-8004.4091.1 at 3950.270 kb on + strand, within Xcc-8004.4091.1 at 3950.270 kb on + strand, within Xcc-8004.4091.1 at 3950.270 kb on + strand, within Xcc-8004.4091.1 at 3950.270 kb on + strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.763 kb on + strand, within Xcc-8004.4092.1 at 3950.763 kb on + strand, within Xcc-8004.4092.1 at 3950.763 kb on + strand, within Xcc-8004.4092.1 at 3950.763 kb on + strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.850 kb on + strand, within Xcc-8004.4092.1 at 3950.891 kb on - strand at 3950.896 kb on + strand at 3950.897 kb on - strand at 3950.928 kb on + strand at 3950.928 kb on + strand at 3950.928 kb on + strand at 3950.928 kb on + strand at 3950.928 kb on + strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3951.073 kb on + strand at 3951.074 kb on - strand at 3951.074 kb on - strand at 3951.074 kb on - strand at 3951.084 kb on + strand at 3951.084 kb on + strand at 3951.085 kb on - strand at 3951.085 kb on - strand at 3951.085 kb on - strand at 3951.085 kb on - strand at 3951.085 kb on - strand at 3951.096 kb on + strand at 3951.096 kb on + strand at 3951.096 kb on + strand at 3951.096 kb on + strand at 3951.097 kb on - strand at 3951.097 kb on - strand at 3951.097 kb on - strand at 3951.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 3,949,873 + Xcc-8004.4091.1 0.41 +2.9 3,949,873 + Xcc-8004.4091.1 0.41 -0.2 3,949,873 + Xcc-8004.4091.1 0.41 -0.5 3,949,873 + Xcc-8004.4091.1 0.41 +1.7 3,949,873 + Xcc-8004.4091.1 0.41 +0.7 3,949,873 + Xcc-8004.4091.1 0.41 +0.9 3,949,873 + Xcc-8004.4091.1 0.41 +1.7 3,949,873 + Xcc-8004.4091.1 0.41 +1.0 3,949,873 + Xcc-8004.4091.1 0.41 -0.4 3,949,873 + Xcc-8004.4091.1 0.41 +0.5 3,949,873 + Xcc-8004.4091.1 0.41 -0.9 3,949,874 - Xcc-8004.4091.1 0.41 -0.3 3,949,874 - Xcc-8004.4091.1 0.41 -2.8 3,949,874 - Xcc-8004.4091.1 0.41 +1.2 3,949,874 - Xcc-8004.4091.1 0.41 -1.6 3,949,874 - Xcc-8004.4091.1 0.41 -0.5 3,949,874 - Xcc-8004.4091.1 0.41 +0.4 3,949,874 - Xcc-8004.4091.1 0.41 -2.2 3,949,874 - Xcc-8004.4091.1 0.41 -0.1 3,949,874 - Xcc-8004.4091.1 0.41 -0.2 3,949,874 - Xcc-8004.4091.1 0.41 -0.1 3,949,874 - Xcc-8004.4091.1 0.41 +0.8 3,949,874 - Xcc-8004.4091.1 0.41 +2.1 3,949,874 - Xcc-8004.4091.1 0.41 -1.1 3,949,874 - Xcc-8004.4091.1 0.41 +0.8 3,949,874 - Xcc-8004.4091.1 0.41 +1.0 3,950,017 + Xcc-8004.4091.1 0.58 -0.2 3,950,017 + Xcc-8004.4091.1 0.58 +0.9 3,950,017 + Xcc-8004.4091.1 0.58 -1.2 3,950,086 + Xcc-8004.4091.1 0.66 +2.4 3,950,086 + Xcc-8004.4091.1 0.66 -1.7 3,950,086 + Xcc-8004.4091.1 0.66 +0.2 3,950,086 + Xcc-8004.4091.1 0.66 -0.4 3,950,086 + Xcc-8004.4091.1 0.66 +1.1 3,950,086 + Xcc-8004.4091.1 0.66 -1.9 3,950,086 + Xcc-8004.4091.1 0.66 +0.7 3,950,087 - Xcc-8004.4091.1 0.66 +1.9 3,950,087 - Xcc-8004.4091.1 0.66 -0.2 3,950,087 - Xcc-8004.4091.1 0.66 -2.5 3,950,087 - Xcc-8004.4091.1 0.66 +0.6 3,950,087 - Xcc-8004.4091.1 0.66 -2.9 3,950,087 - Xcc-8004.4091.1 0.66 +0.7 3,950,087 - Xcc-8004.4091.1 0.66 -0.5 3,950,087 - Xcc-8004.4091.1 0.66 +1.7 3,950,188 - Xcc-8004.4091.1 0.78 +1.2 3,950,270 + Xcc-8004.4091.1 0.88 -2.0 3,950,270 + Xcc-8004.4091.1 0.88 -1.2 3,950,270 + Xcc-8004.4091.1 0.88 -3.3 3,950,270 + Xcc-8004.4091.1 0.88 +0.9 3,950,271 - Xcc-8004.4091.1 0.88 +0.7 3,950,271 - Xcc-8004.4091.1 0.88 -0.3 3,950,271 - Xcc-8004.4091.1 0.88 +1.2 3,950,271 - Xcc-8004.4091.1 0.88 +0.6 3,950,271 - Xcc-8004.4091.1 0.88 +0.4 3,950,394 + -2.0 3,950,394 + +0.8 3,950,394 + +0.7 3,950,394 + -2.1 3,950,394 + -2.7 3,950,394 + +0.7 3,950,394 + -2.4 3,950,394 + -1.1 3,950,394 + +1.7 3,950,394 + -0.1 3,950,394 + -0.3 3,950,394 + -0.1 3,950,394 + +3.6 3,950,394 + +2.0 3,950,394 + -3.3 3,950,394 + -1.6 3,950,395 - +0.1 3,950,395 - -2.3 3,950,395 - -0.7 3,950,395 - -2.9 3,950,395 - -0.1 3,950,395 - -3.4 3,950,395 - +2.3 3,950,395 - -1.9 3,950,395 - -0.1 3,950,595 + Xcc-8004.4092.1 0.39 -0.2 3,950,595 + Xcc-8004.4092.1 0.39 +1.9 3,950,595 + Xcc-8004.4092.1 0.39 -2.2 3,950,595 + Xcc-8004.4092.1 0.39 -1.3 3,950,595 + Xcc-8004.4092.1 0.39 -1.9 3,950,595 + Xcc-8004.4092.1 0.39 -0.9 3,950,595 + Xcc-8004.4092.1 0.39 -1.4 3,950,595 + Xcc-8004.4092.1 0.39 +1.1 3,950,595 + Xcc-8004.4092.1 0.39 -1.7 3,950,596 - Xcc-8004.4092.1 0.40 +0.1 3,950,596 - Xcc-8004.4092.1 0.40 -2.2 3,950,596 - Xcc-8004.4092.1 0.40 -2.0 3,950,596 - Xcc-8004.4092.1 0.40 -0.3 3,950,596 - Xcc-8004.4092.1 0.40 -0.0 3,950,596 - Xcc-8004.4092.1 0.40 -2.0 3,950,712 + Xcc-8004.4092.1 0.62 +1.0 3,950,712 + Xcc-8004.4092.1 0.62 -0.5 3,950,712 + Xcc-8004.4092.1 0.62 +0.7 3,950,712 + Xcc-8004.4092.1 0.62 -2.2 3,950,712 + Xcc-8004.4092.1 0.62 -1.1 3,950,712 + Xcc-8004.4092.1 0.62 -1.6 3,950,712 + Xcc-8004.4092.1 0.62 -2.7 3,950,712 + Xcc-8004.4092.1 0.62 -1.9 3,950,713 - Xcc-8004.4092.1 0.62 +0.1 3,950,713 - Xcc-8004.4092.1 0.62 -1.3 3,950,713 - Xcc-8004.4092.1 0.62 +0.7 3,950,713 - Xcc-8004.4092.1 0.62 +0.1 3,950,713 - Xcc-8004.4092.1 0.62 +0.1 3,950,713 - Xcc-8004.4092.1 0.62 -0.3 3,950,713 - Xcc-8004.4092.1 0.62 -1.6 3,950,713 - Xcc-8004.4092.1 0.62 -0.5 3,950,713 - Xcc-8004.4092.1 0.62 +0.2 3,950,713 - Xcc-8004.4092.1 0.62 -0.7 3,950,763 + Xcc-8004.4092.1 0.72 -0.6 3,950,763 + Xcc-8004.4092.1 0.72 -1.6 3,950,763 + Xcc-8004.4092.1 0.72 -1.1 3,950,763 + Xcc-8004.4092.1 0.72 -2.0 3,950,764 - Xcc-8004.4092.1 0.72 -0.9 3,950,764 - Xcc-8004.4092.1 0.72 -0.3 3,950,764 - Xcc-8004.4092.1 0.72 -2.5 3,950,764 - Xcc-8004.4092.1 0.72 -2.0 3,950,764 - Xcc-8004.4092.1 0.72 -1.2 3,950,764 - Xcc-8004.4092.1 0.72 +0.6 3,950,764 - Xcc-8004.4092.1 0.72 -1.3 3,950,764 - Xcc-8004.4092.1 0.72 -2.0 3,950,764 - Xcc-8004.4092.1 0.72 -1.3 3,950,764 - Xcc-8004.4092.1 0.72 -0.6 3,950,850 + Xcc-8004.4092.1 0.89 -0.9 3,950,891 - -1.1 3,950,896 + -0.3 3,950,897 - -1.6 3,950,928 + -2.6 3,950,928 + -0.3 3,950,928 + -1.4 3,950,928 + -1.4 3,950,928 + -1.9 3,950,929 - +0.4 3,950,929 - +1.1 3,950,929 - +0.3 3,950,929 - -2.3 3,950,929 - -1.2 3,950,929 - +2.1 3,950,929 - -2.4 3,950,929 - +0.1 3,950,929 - +1.1 3,950,929 - -3.0 3,950,929 - -2.7 3,950,929 - +1.3 3,950,929 - -0.3 3,950,929 - -0.0 3,950,929 - -1.1 3,950,929 - -0.9 3,950,929 - -0.9 3,950,929 - -0.3 3,950,929 - +0.4 3,950,929 - +1.4 3,950,947 + +1.7 3,950,947 + +0.7 3,950,947 + +1.3 3,950,947 + -0.7 3,950,947 + -1.7 3,950,947 + -1.3 3,950,947 + +1.0 3,950,947 + +0.3 3,950,948 - +0.2 3,950,948 - +0.1 3,950,948 - -2.4 3,950,948 - -1.7 3,950,948 - -1.3 3,950,948 - +3.2 3,950,948 - +2.1 3,951,073 + -2.4 3,951,074 - -1.1 3,951,074 - -1.7 3,951,074 - +3.4 3,951,084 + +2.7 3,951,084 + -2.4 3,951,085 - +1.6 3,951,085 - -0.9 3,951,085 - -0.6 3,951,085 - -2.4 3,951,085 - -1.5 3,951,096 + +0.7 3,951,096 + -2.1 3,951,096 + -1.1 3,951,096 + +0.7 3,951,097 - +2.7 3,951,097 - -0.3 3,951,097 - -3.5 3,951,097 - -0.9
Or see this region's nucleotide sequence