Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3991.1 and Xcc-8004.3992.1 are separated by 60 nucleotides Xcc-8004.3992.1 and Xcc-8004.3993.1 are separated by 161 nucleotides
Xcc-8004.3991.1: Xcc-8004.3991.1 - FIG004453: protein YceG like, at 3,867,840 to 3,868,898
Xcc-8004.3991.1
Xcc-8004.3992.1: Xcc-8004.3992.1 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85), at 3,868,959 to 3,870,314
Xcc-8004.3992.1
Xcc-8004.3993.1: Xcc-8004.3993.1 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 3,870,476 to 3,871,711
Xcc-8004.3993.1
Position (kb) 3868
3869
3870
3871 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 3868.050 kb on - strand, within Xcc-8004.3991.1 at 3868.051 kb on + strand, within Xcc-8004.3991.1 at 3868.052 kb on - strand, within Xcc-8004.3991.1 at 3868.052 kb on - strand, within Xcc-8004.3991.1 at 3868.052 kb on - strand, within Xcc-8004.3991.1 at 3868.052 kb on - strand, within Xcc-8004.3991.1 at 3868.052 kb on - strand, within Xcc-8004.3991.1 at 3868.052 kb on - strand, within Xcc-8004.3991.1 at 3868.052 kb on - strand, within Xcc-8004.3991.1 at 3868.052 kb on - strand, within Xcc-8004.3991.1 at 3868.060 kb on + strand, within Xcc-8004.3991.1 at 3868.060 kb on + strand, within Xcc-8004.3991.1 at 3868.060 kb on + strand, within Xcc-8004.3991.1 at 3868.060 kb on + strand, within Xcc-8004.3991.1 at 3868.061 kb on - strand, within Xcc-8004.3991.1 at 3868.061 kb on - strand, within Xcc-8004.3991.1 at 3868.061 kb on - strand, within Xcc-8004.3991.1 at 3868.061 kb on - strand, within Xcc-8004.3991.1 at 3868.061 kb on - strand, within Xcc-8004.3991.1 at 3868.106 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.124 kb on - strand, within Xcc-8004.3991.1 at 3868.370 kb on - strand, within Xcc-8004.3991.1 at 3868.370 kb on - strand, within Xcc-8004.3991.1 at 3868.370 kb on - strand, within Xcc-8004.3991.1 at 3868.370 kb on - strand, within Xcc-8004.3991.1 at 3868.376 kb on - strand, within Xcc-8004.3991.1 at 3868.376 kb on - strand, within Xcc-8004.3991.1 at 3868.376 kb on - strand, within Xcc-8004.3991.1 at 3868.387 kb on - strand, within Xcc-8004.3991.1 at 3868.573 kb on - strand, within Xcc-8004.3991.1 at 3868.573 kb on - strand, within Xcc-8004.3991.1 at 3868.610 kb on - strand, within Xcc-8004.3991.1 at 3868.610 kb on - strand, within Xcc-8004.3991.1 at 3868.793 kb on - strand at 3868.793 kb on - strand at 3868.793 kb on - strand at 3868.793 kb on - strand at 3868.793 kb on - strand at 3868.793 kb on - strand at 3868.793 kb on - strand at 3868.956 kb on + strand at 3868.956 kb on + strand at 3868.957 kb on - strand at 3868.957 kb on - strand at 3868.957 kb on - strand at 3868.957 kb on - strand at 3868.957 kb on - strand at 3869.067 kb on + strand at 3869.067 kb on + strand at 3869.067 kb on + strand at 3869.067 kb on + strand at 3869.068 kb on - strand at 3869.068 kb on - strand at 3869.068 kb on - strand at 3869.068 kb on - strand at 3869.068 kb on - strand at 3869.153 kb on + strand, within Xcc-8004.3992.1 at 3869.153 kb on + strand, within Xcc-8004.3992.1 at 3869.153 kb on + strand, within Xcc-8004.3992.1 at 3869.154 kb on - strand, within Xcc-8004.3992.1 at 3869.156 kb on - strand, within Xcc-8004.3992.1 at 3869.156 kb on - strand, within Xcc-8004.3992.1 at 3869.156 kb on - strand, within Xcc-8004.3992.1 at 3869.242 kb on - strand, within Xcc-8004.3992.1 at 3869.323 kb on + strand, within Xcc-8004.3992.1 at 3869.323 kb on + strand, within Xcc-8004.3992.1 at 3869.323 kb on + strand, within Xcc-8004.3992.1 at 3869.323 kb on + strand, within Xcc-8004.3992.1 at 3869.323 kb on + strand, within Xcc-8004.3992.1 at 3869.323 kb on + strand, within Xcc-8004.3992.1 at 3869.323 kb on + strand, within Xcc-8004.3992.1 at 3869.323 kb on + strand, within Xcc-8004.3992.1 at 3869.324 kb on - strand, within Xcc-8004.3992.1 at 3869.324 kb on - strand, within Xcc-8004.3992.1 at 3869.324 kb on - strand, within Xcc-8004.3992.1 at 3869.324 kb on - strand, within Xcc-8004.3992.1 at 3869.324 kb on - strand, within Xcc-8004.3992.1 at 3869.324 kb on - strand, within Xcc-8004.3992.1 at 3869.324 kb on - strand, within Xcc-8004.3992.1 at 3869.324 kb on - strand, within Xcc-8004.3992.1 at 3869.324 kb on - strand, within Xcc-8004.3992.1 at 3869.331 kb on + strand, within Xcc-8004.3992.1 at 3869.331 kb on + strand, within Xcc-8004.3992.1 at 3869.331 kb on + strand, within Xcc-8004.3992.1 at 3869.332 kb on - strand, within Xcc-8004.3992.1 at 3869.332 kb on - strand, within Xcc-8004.3992.1 at 3869.520 kb on + strand, within Xcc-8004.3992.1 at 3869.520 kb on + strand, within Xcc-8004.3992.1 at 3869.520 kb on + strand, within Xcc-8004.3992.1 at 3869.520 kb on + strand, within Xcc-8004.3992.1 at 3869.521 kb on - strand, within Xcc-8004.3992.1 at 3869.521 kb on - strand, within Xcc-8004.3992.1 at 3869.521 kb on - strand, within Xcc-8004.3992.1 at 3869.521 kb on - strand, within Xcc-8004.3992.1 at 3869.687 kb on + strand, within Xcc-8004.3992.1 at 3869.687 kb on + strand, within Xcc-8004.3992.1 at 3869.687 kb on + strand, within Xcc-8004.3992.1 at 3869.687 kb on + strand, within Xcc-8004.3992.1 at 3869.687 kb on + strand, within Xcc-8004.3992.1 at 3869.688 kb on - strand, within Xcc-8004.3992.1 at 3869.688 kb on - strand, within Xcc-8004.3992.1 at 3869.688 kb on - strand, within Xcc-8004.3992.1 at 3869.688 kb on - strand, within Xcc-8004.3992.1 at 3869.688 kb on - strand, within Xcc-8004.3992.1 at 3869.719 kb on + strand, within Xcc-8004.3992.1 at 3869.719 kb on + strand, within Xcc-8004.3992.1 at 3869.719 kb on + strand, within Xcc-8004.3992.1 at 3869.720 kb on - strand, within Xcc-8004.3992.1 at 3869.720 kb on - strand, within Xcc-8004.3992.1 at 3869.720 kb on - strand, within Xcc-8004.3992.1 at 3870.004 kb on + strand, within Xcc-8004.3992.1 at 3870.004 kb on + strand, within Xcc-8004.3992.1 at 3870.004 kb on + strand, within Xcc-8004.3992.1 at 3870.004 kb on + strand, within Xcc-8004.3992.1 at 3870.004 kb on + strand, within Xcc-8004.3992.1 at 3870.004 kb on + strand, within Xcc-8004.3992.1 at 3870.005 kb on - strand, within Xcc-8004.3992.1 at 3870.005 kb on - strand, within Xcc-8004.3992.1 at 3870.005 kb on - strand, within Xcc-8004.3992.1 at 3870.005 kb on - strand, within Xcc-8004.3992.1 at 3870.005 kb on - strand, within Xcc-8004.3992.1 at 3870.389 kb on + strand at 3870.389 kb on + strand at 3870.390 kb on - strand at 3870.390 kb on - strand at 3870.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 3,868,050 - Xcc-8004.3991.1 0.20 -0.4 3,868,051 + Xcc-8004.3991.1 0.20 -0.3 3,868,052 - Xcc-8004.3991.1 0.20 +1.6 3,868,052 - Xcc-8004.3991.1 0.20 -0.3 3,868,052 - Xcc-8004.3991.1 0.20 +0.7 3,868,052 - Xcc-8004.3991.1 0.20 -0.5 3,868,052 - Xcc-8004.3991.1 0.20 +0.7 3,868,052 - Xcc-8004.3991.1 0.20 +3.0 3,868,052 - Xcc-8004.3991.1 0.20 -0.4 3,868,052 - Xcc-8004.3991.1 0.20 +0.0 3,868,060 + Xcc-8004.3991.1 0.21 -1.7 3,868,060 + Xcc-8004.3991.1 0.21 +0.2 3,868,060 + Xcc-8004.3991.1 0.21 -0.6 3,868,060 + Xcc-8004.3991.1 0.21 +0.2 3,868,061 - Xcc-8004.3991.1 0.21 +2.6 3,868,061 - Xcc-8004.3991.1 0.21 -3.5 3,868,061 - Xcc-8004.3991.1 0.21 +1.4 3,868,061 - Xcc-8004.3991.1 0.21 +1.0 3,868,061 - Xcc-8004.3991.1 0.21 -2.5 3,868,106 - Xcc-8004.3991.1 0.25 +3.0 3,868,124 - Xcc-8004.3991.1 0.27 +2.4 3,868,124 - Xcc-8004.3991.1 0.27 +5.3 3,868,124 - Xcc-8004.3991.1 0.27 +2.5 3,868,124 - Xcc-8004.3991.1 0.27 -0.4 3,868,124 - Xcc-8004.3991.1 0.27 +1.3 3,868,124 - Xcc-8004.3991.1 0.27 +0.3 3,868,124 - Xcc-8004.3991.1 0.27 +2.7 3,868,124 - Xcc-8004.3991.1 0.27 +3.0 3,868,124 - Xcc-8004.3991.1 0.27 -0.4 3,868,124 - Xcc-8004.3991.1 0.27 -0.3 3,868,124 - Xcc-8004.3991.1 0.27 +0.4 3,868,124 - Xcc-8004.3991.1 0.27 -0.7 3,868,370 - Xcc-8004.3991.1 0.50 -0.9 3,868,370 - Xcc-8004.3991.1 0.50 -2.1 3,868,370 - Xcc-8004.3991.1 0.50 -0.3 3,868,370 - Xcc-8004.3991.1 0.50 -0.7 3,868,376 - Xcc-8004.3991.1 0.51 +0.8 3,868,376 - Xcc-8004.3991.1 0.51 -0.9 3,868,376 - Xcc-8004.3991.1 0.51 +0.4 3,868,387 - Xcc-8004.3991.1 0.52 +2.1 3,868,573 - Xcc-8004.3991.1 0.69 -1.4 3,868,573 - Xcc-8004.3991.1 0.69 -1.3 3,868,610 - Xcc-8004.3991.1 0.73 -2.8 3,868,610 - Xcc-8004.3991.1 0.73 +3.1 3,868,793 - +1.1 3,868,793 - +0.9 3,868,793 - +0.3 3,868,793 - +0.6 3,868,793 - +1.7 3,868,793 - +0.4 3,868,793 - -1.2 3,868,956 + +0.5 3,868,956 + -0.1 3,868,957 - +1.3 3,868,957 - -0.5 3,868,957 - +1.7 3,868,957 - -0.1 3,868,957 - +2.3 3,869,067 + +0.5 3,869,067 + -0.4 3,869,067 + +3.4 3,869,067 + -2.9 3,869,068 - -1.3 3,869,068 - -1.8 3,869,068 - -0.8 3,869,068 - +0.3 3,869,068 - -1.9 3,869,153 + Xcc-8004.3992.1 0.14 +0.3 3,869,153 + Xcc-8004.3992.1 0.14 -0.2 3,869,153 + Xcc-8004.3992.1 0.14 +1.1 3,869,154 - Xcc-8004.3992.1 0.14 -1.2 3,869,156 - Xcc-8004.3992.1 0.15 -0.1 3,869,156 - Xcc-8004.3992.1 0.15 +0.5 3,869,156 - Xcc-8004.3992.1 0.15 -1.3 3,869,242 - Xcc-8004.3992.1 0.21 +0.4 3,869,323 + Xcc-8004.3992.1 0.27 -0.8 3,869,323 + Xcc-8004.3992.1 0.27 +3.1 3,869,323 + Xcc-8004.3992.1 0.27 -1.1 3,869,323 + Xcc-8004.3992.1 0.27 -1.4 3,869,323 + Xcc-8004.3992.1 0.27 -1.7 3,869,323 + Xcc-8004.3992.1 0.27 -2.8 3,869,323 + Xcc-8004.3992.1 0.27 -0.3 3,869,323 + Xcc-8004.3992.1 0.27 -0.7 3,869,324 - Xcc-8004.3992.1 0.27 -0.7 3,869,324 - Xcc-8004.3992.1 0.27 -0.8 3,869,324 - Xcc-8004.3992.1 0.27 -1.6 3,869,324 - Xcc-8004.3992.1 0.27 -1.7 3,869,324 - Xcc-8004.3992.1 0.27 -1.7 3,869,324 - Xcc-8004.3992.1 0.27 -1.0 3,869,324 - Xcc-8004.3992.1 0.27 -2.2 3,869,324 - Xcc-8004.3992.1 0.27 +1.0 3,869,324 - Xcc-8004.3992.1 0.27 -1.2 3,869,331 + Xcc-8004.3992.1 0.27 +2.0 3,869,331 + Xcc-8004.3992.1 0.27 -0.3 3,869,331 + Xcc-8004.3992.1 0.27 +0.2 3,869,332 - Xcc-8004.3992.1 0.28 -1.3 3,869,332 - Xcc-8004.3992.1 0.28 -1.3 3,869,520 + Xcc-8004.3992.1 0.41 +0.5 3,869,520 + Xcc-8004.3992.1 0.41 -3.4 3,869,520 + Xcc-8004.3992.1 0.41 -2.3 3,869,520 + Xcc-8004.3992.1 0.41 -1.6 3,869,521 - Xcc-8004.3992.1 0.41 -2.0 3,869,521 - Xcc-8004.3992.1 0.41 -2.3 3,869,521 - Xcc-8004.3992.1 0.41 -0.7 3,869,521 - Xcc-8004.3992.1 0.41 +0.3 3,869,687 + Xcc-8004.3992.1 0.54 -1.4 3,869,687 + Xcc-8004.3992.1 0.54 -0.9 3,869,687 + Xcc-8004.3992.1 0.54 +0.8 3,869,687 + Xcc-8004.3992.1 0.54 -1.6 3,869,687 + Xcc-8004.3992.1 0.54 +0.1 3,869,688 - Xcc-8004.3992.1 0.54 +0.4 3,869,688 - Xcc-8004.3992.1 0.54 -2.5 3,869,688 - Xcc-8004.3992.1 0.54 -1.4 3,869,688 - Xcc-8004.3992.1 0.54 -0.3 3,869,688 - Xcc-8004.3992.1 0.54 -1.1 3,869,719 + Xcc-8004.3992.1 0.56 -1.7 3,869,719 + Xcc-8004.3992.1 0.56 -0.6 3,869,719 + Xcc-8004.3992.1 0.56 +0.2 3,869,720 - Xcc-8004.3992.1 0.56 +0.2 3,869,720 - Xcc-8004.3992.1 0.56 +1.5 3,869,720 - Xcc-8004.3992.1 0.56 -4.2 3,870,004 + Xcc-8004.3992.1 0.77 -1.3 3,870,004 + Xcc-8004.3992.1 0.77 -3.0 3,870,004 + Xcc-8004.3992.1 0.77 -0.3 3,870,004 + Xcc-8004.3992.1 0.77 -1.4 3,870,004 + Xcc-8004.3992.1 0.77 -0.1 3,870,004 + Xcc-8004.3992.1 0.77 -0.3 3,870,005 - Xcc-8004.3992.1 0.77 -1.7 3,870,005 - Xcc-8004.3992.1 0.77 +2.7 3,870,005 - Xcc-8004.3992.1 0.77 +1.7 3,870,005 - Xcc-8004.3992.1 0.77 +0.7 3,870,005 - Xcc-8004.3992.1 0.77 -1.2 3,870,389 + +2.0 3,870,389 + +0.7 3,870,390 - +1.6 3,870,390 - +0.9 3,870,390 - +1.9
Or see this region's nucleotide sequence