Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2914.1

Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2912.1 and Xcc-8004.2913.1 are separated by 57 nucleotidesXcc-8004.2913.1 and Xcc-8004.2914.1 overlap by 1 nucleotidesXcc-8004.2914.1 and Xcc-8004.2915.1 are separated by 191 nucleotidesXcc-8004.2915.1 and Xcc-8004.2916.1 are separated by 122 nucleotides Xcc-8004.2912.1: Xcc-8004.2912.1 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 2,835,678 to 2,838,920 Xcc-8004.2912.1 Xcc-8004.2913.1: Xcc-8004.2913.1 - putative; ORF located using Glimmer/Genemark, at 2,838,978 to 2,839,529 Xcc-8004.2913.1 Xcc-8004.2914.1: Xcc-8004.2914.1 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 2,839,529 to 2,840,704 Xcc-8004.2914.1 Xcc-8004.2915.1: Xcc-8004.2915.1 - 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8), at 2,840,896 to 2,841,564 Xcc-8004.2915.1 Xcc-8004.2916.1: Xcc-8004.2916.1 - Uncharacterized protein conserved in bacteria, at 2,841,687 to 2,842,415 Xcc-8004.2916.1 Position (kb) 2839 2840 2841Strain fitness (log2 ratio) -3 -2 -1 0 1at 2838.931 kb on - strandat 2839.522 kb on - strandat 2840.851 kb on + strandat 2840.851 kb on + strandat 2840.851 kb on + strandat 2840.851 kb on + strandat 2840.852 kb on - strandat 2840.852 kb on - strandat 2840.852 kb on - strandat 2840.880 kb on + strandat 2840.881 kb on - strandat 2840.897 kb on + strandat 2840.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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2,838,931 - -0.3
2,839,522 - +1.4
2,840,851 + -2.6
2,840,851 + -1.0
2,840,851 + +1.0
2,840,851 + +1.1
2,840,852 - -0.2
2,840,852 - +0.7
2,840,852 - -2.8
2,840,880 + +0.0
2,840,881 - -1.1
2,840,897 + -1.2
2,840,898 - +1.7

Or see this region's nucleotide sequence