Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2064.1

Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2063.1 and Xcc-8004.2064.1 overlap by 4 nucleotidesXcc-8004.2064.1 and Xcc-8004.2065.1 overlap by 1 nucleotides Xcc-8004.2063.1: Xcc-8004.2063.1 - Six-hairpin glycosidase-like protein, at 1,978,212 to 1,980,533 Xcc-8004.2063.1 Xcc-8004.2064.1: Xcc-8004.2064.1 - Predicted maltose transporter MalT, at 1,980,530 to 1,982,008 Xcc-8004.2064.1 Xcc-8004.2065.1: Xcc-8004.2065.1 - Cyclomaltodextrin glucanotransferase, at 1,982,008 to 1,983,681 Xcc-8004.2065.1 Position (kb) 1980 1981 1982 1983Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1979.545 kb on - strand, within Xcc-8004.2063.1at 1979.772 kb on + strand, within Xcc-8004.2063.1at 1979.776 kb on + strand, within Xcc-8004.2063.1at 1979.777 kb on - strand, within Xcc-8004.2063.1at 1979.777 kb on - strand, within Xcc-8004.2063.1at 1979.777 kb on - strand, within Xcc-8004.2063.1at 1979.777 kb on - strand, within Xcc-8004.2063.1at 1979.777 kb on - strand, within Xcc-8004.2063.1at 1979.783 kb on - strand, within Xcc-8004.2063.1at 1980.000 kb on + strand, within Xcc-8004.2063.1at 1980.110 kb on + strand, within Xcc-8004.2063.1at 1980.385 kb on + strandat 1980.385 kb on + strandat 1980.385 kb on + strandat 1980.386 kb on - strandat 1980.386 kb on - strandat 1980.436 kb on - strandat 1980.728 kb on + strand, within Xcc-8004.2064.1at 1980.773 kb on + strand, within Xcc-8004.2064.1at 1980.774 kb on - strand, within Xcc-8004.2064.1at 1980.774 kb on - strand, within Xcc-8004.2064.1at 1981.029 kb on + strand, within Xcc-8004.2064.1at 1981.029 kb on + strand, within Xcc-8004.2064.1at 1981.029 kb on + strand, within Xcc-8004.2064.1at 1981.030 kb on - strand, within Xcc-8004.2064.1at 1981.030 kb on - strand, within Xcc-8004.2064.1at 1981.083 kb on - strand, within Xcc-8004.2064.1at 1981.086 kb on + strand, within Xcc-8004.2064.1at 1981.086 kb on + strand, within Xcc-8004.2064.1at 1981.087 kb on - strand, within Xcc-8004.2064.1at 1981.304 kb on + strand, within Xcc-8004.2064.1at 1981.304 kb on + strand, within Xcc-8004.2064.1at 1981.305 kb on - strand, within Xcc-8004.2064.1at 1981.305 kb on - strand, within Xcc-8004.2064.1at 1981.541 kb on + strand, within Xcc-8004.2064.1at 1981.541 kb on + strand, within Xcc-8004.2064.1at 1981.541 kb on + strand, within Xcc-8004.2064.1at 1981.583 kb on + strand, within Xcc-8004.2064.1at 1981.583 kb on + strand, within Xcc-8004.2064.1at 1981.584 kb on - strand, within Xcc-8004.2064.1at 1981.782 kb on - strand, within Xcc-8004.2064.1at 1981.826 kb on + strand, within Xcc-8004.2064.1at 1981.826 kb on + strand, within Xcc-8004.2064.1at 1981.826 kb on + strand, within Xcc-8004.2064.1at 1981.826 kb on + strand, within Xcc-8004.2064.1at 1981.826 kb on + strand, within Xcc-8004.2064.1at 1981.826 kb on + strand, within Xcc-8004.2064.1at 1981.826 kb on + strand, within Xcc-8004.2064.1at 1981.827 kb on - strand, within Xcc-8004.2064.1at 1981.827 kb on - strand, within Xcc-8004.2064.1at 1981.827 kb on - strand, within Xcc-8004.2064.1at 1981.827 kb on - strand, within Xcc-8004.2064.1at 1981.828 kb on + strand, within Xcc-8004.2064.1at 1981.829 kb on - strand, within Xcc-8004.2064.1at 1981.925 kb on + strandat 1982.080 kb on + strandat 1982.080 kb on + strandat 1982.080 kb on + strandat 1982.081 kb on - strandat 1982.084 kb on - strandat 1982.120 kb on - strandat 1982.246 kb on - strand, within Xcc-8004.2065.1at 1982.287 kb on + strand, within Xcc-8004.2065.1at 1982.287 kb on + strand, within Xcc-8004.2065.1at 1982.288 kb on - strand, within Xcc-8004.2065.1at 1982.413 kb on + strand, within Xcc-8004.2065.1at 1982.423 kb on - strand, within Xcc-8004.2065.1at 1982.561 kb on - strand, within Xcc-8004.2065.1at 1982.600 kb on - strand, within Xcc-8004.2065.1at 1982.600 kb on - strand, within Xcc-8004.2065.1at 1982.687 kb on - strand, within Xcc-8004.2065.1at 1982.687 kb on - strand, within Xcc-8004.2065.1at 1982.687 kb on - strand, within Xcc-8004.2065.1at 1982.687 kb on - strand, within Xcc-8004.2065.1at 1982.687 kb on - strand, within Xcc-8004.2065.1at 1982.752 kb on + strand, within Xcc-8004.2065.1at 1982.753 kb on - strand, within Xcc-8004.2065.1at 1982.753 kb on - strand, within Xcc-8004.2065.1at 1982.991 kb on - strand, within Xcc-8004.2065.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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1,979,545 - Xcc-8004.2063.1 0.57 +0.2
1,979,772 + Xcc-8004.2063.1 0.67 +1.0
1,979,776 + Xcc-8004.2063.1 0.67 +1.1
1,979,777 - Xcc-8004.2063.1 0.67 +1.4
1,979,777 - Xcc-8004.2063.1 0.67 -1.4
1,979,777 - Xcc-8004.2063.1 0.67 -0.3
1,979,777 - Xcc-8004.2063.1 0.67 -0.8
1,979,777 - Xcc-8004.2063.1 0.67 -1.3
1,979,783 - Xcc-8004.2063.1 0.68 -2.5
1,980,000 + Xcc-8004.2063.1 0.77 +0.5
1,980,110 + Xcc-8004.2063.1 0.82 +1.2
1,980,385 + +0.8
1,980,385 + -2.1
1,980,385 + +0.6
1,980,386 - -0.7
1,980,386 - -1.2
1,980,436 - -0.6
1,980,728 + Xcc-8004.2064.1 0.13 +3.7
1,980,773 + Xcc-8004.2064.1 0.16 -2.9
1,980,774 - Xcc-8004.2064.1 0.16 +2.4
1,980,774 - Xcc-8004.2064.1 0.16 -3.6
1,981,029 + Xcc-8004.2064.1 0.34 +0.5
1,981,029 + Xcc-8004.2064.1 0.34 +2.4
1,981,029 + Xcc-8004.2064.1 0.34 +0.2
1,981,030 - Xcc-8004.2064.1 0.34 -2.4
1,981,030 - Xcc-8004.2064.1 0.34 -1.7
1,981,083 - Xcc-8004.2064.1 0.37 -0.5
1,981,086 + Xcc-8004.2064.1 0.38 +0.9
1,981,086 + Xcc-8004.2064.1 0.38 -0.3
1,981,087 - Xcc-8004.2064.1 0.38 +2.4
1,981,304 + Xcc-8004.2064.1 0.52 +2.1
1,981,304 + Xcc-8004.2064.1 0.52 +0.1
1,981,305 - Xcc-8004.2064.1 0.52 -1.1
1,981,305 - Xcc-8004.2064.1 0.52 -1.4
1,981,541 + Xcc-8004.2064.1 0.68 +1.3
1,981,541 + Xcc-8004.2064.1 0.68 +1.6
1,981,541 + Xcc-8004.2064.1 0.68 +1.0
1,981,583 + Xcc-8004.2064.1 0.71 -2.2
1,981,583 + Xcc-8004.2064.1 0.71 +0.0
1,981,584 - Xcc-8004.2064.1 0.71 -0.5
1,981,782 - Xcc-8004.2064.1 0.85 -1.4
1,981,826 + Xcc-8004.2064.1 0.88 -1.8
1,981,826 + Xcc-8004.2064.1 0.88 -1.6
1,981,826 + Xcc-8004.2064.1 0.88 +0.3
1,981,826 + Xcc-8004.2064.1 0.88 +0.3
1,981,826 + Xcc-8004.2064.1 0.88 -1.5
1,981,826 + Xcc-8004.2064.1 0.88 -1.4
1,981,826 + Xcc-8004.2064.1 0.88 +0.8
1,981,827 - Xcc-8004.2064.1 0.88 +1.2
1,981,827 - Xcc-8004.2064.1 0.88 -0.3
1,981,827 - Xcc-8004.2064.1 0.88 -1.4
1,981,827 - Xcc-8004.2064.1 0.88 -0.5
1,981,828 + Xcc-8004.2064.1 0.88 +0.3
1,981,829 - Xcc-8004.2064.1 0.88 -3.8
1,981,925 + +1.9
1,982,080 + -1.2
1,982,080 + +0.8
1,982,080 + +1.5
1,982,081 - +0.9
1,982,084 - -0.7
1,982,120 - -1.2
1,982,246 - Xcc-8004.2065.1 0.14 +0.6
1,982,287 + Xcc-8004.2065.1 0.17 +0.0
1,982,287 + Xcc-8004.2065.1 0.17 -2.7
1,982,288 - Xcc-8004.2065.1 0.17 +1.1
1,982,413 + Xcc-8004.2065.1 0.24 +3.6
1,982,423 - Xcc-8004.2065.1 0.25 -0.8
1,982,561 - Xcc-8004.2065.1 0.33 -1.2
1,982,600 - Xcc-8004.2065.1 0.35 +1.2
1,982,600 - Xcc-8004.2065.1 0.35 +0.5
1,982,687 - Xcc-8004.2065.1 0.41 -1.7
1,982,687 - Xcc-8004.2065.1 0.41 -0.1
1,982,687 - Xcc-8004.2065.1 0.41 +0.6
1,982,687 - Xcc-8004.2065.1 0.41 -0.9
1,982,687 - Xcc-8004.2065.1 0.41 +1.6
1,982,752 + Xcc-8004.2065.1 0.44 +0.4
1,982,753 - Xcc-8004.2065.1 0.45 +0.1
1,982,753 - Xcc-8004.2065.1 0.45 +1.4
1,982,991 - Xcc-8004.2065.1 0.59 -0.7

Or see this region's nucleotide sequence