Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1268.1

Experiment: 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1267.1 and Xcc-8004.1268.1 are separated by 412 nucleotidesXcc-8004.1268.1 and Xcc-8004.1269.1 are separated by 172 nucleotides Xcc-8004.1267.1: Xcc-8004.1267.1 - Carboxylesterase, type B, at 1,206,236 to 1,207,744 Xcc-8004.1267.1 Xcc-8004.1268.1: Xcc-8004.1268.1 - Maltodextrin glucosidase (EC 3.2.1.20), at 1,208,157 to 1,210,121 Xcc-8004.1268.1 Xcc-8004.1269.1: Xcc-8004.1269.1 - glycosyl hydrolase, at 1,210,294 to 1,213,758 Xcc-8004.1269.1 Position (kb) 1208 1209 1210 1211Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1207.245 kb on - strand, within Xcc-8004.1267.1at 1207.245 kb on - strand, within Xcc-8004.1267.1at 1207.265 kb on + strand, within Xcc-8004.1267.1at 1207.296 kb on + strand, within Xcc-8004.1267.1at 1207.296 kb on + strand, within Xcc-8004.1267.1at 1207.296 kb on + strand, within Xcc-8004.1267.1at 1207.297 kb on - strand, within Xcc-8004.1267.1at 1207.297 kb on - strand, within Xcc-8004.1267.1at 1207.475 kb on + strand, within Xcc-8004.1267.1at 1207.475 kb on + strand, within Xcc-8004.1267.1at 1207.475 kb on + strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.516 kb on + strand, within Xcc-8004.1267.1at 1207.516 kb on + strand, within Xcc-8004.1267.1at 1207.517 kb on - strand, within Xcc-8004.1267.1at 1207.942 kb on + strandat 1207.968 kb on + strandat 1207.969 kb on - strandat 1207.969 kb on - strandat 1207.969 kb on - strandat 1207.969 kb on - strandat 1207.969 kb on - strandat 1207.976 kb on + strandat 1207.977 kb on - strandat 1208.211 kb on + strandat 1208.211 kb on + strandat 1208.212 kb on - strandat 1208.278 kb on + strandat 1208.279 kb on - strandat 1208.279 kb on - strandat 1208.279 kb on - strandat 1208.365 kb on + strand, within Xcc-8004.1268.1at 1208.365 kb on + strand, within Xcc-8004.1268.1at 1208.365 kb on + strand, within Xcc-8004.1268.1at 1208.366 kb on - strand, within Xcc-8004.1268.1at 1208.366 kb on - strand, within Xcc-8004.1268.1at 1208.530 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.638 kb on + strand, within Xcc-8004.1268.1at 1208.638 kb on + strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.747 kb on + strand, within Xcc-8004.1268.1at 1208.747 kb on + strand, within Xcc-8004.1268.1at 1208.748 kb on - strand, within Xcc-8004.1268.1at 1208.748 kb on - strand, within Xcc-8004.1268.1at 1208.748 kb on - strand, within Xcc-8004.1268.1at 1208.748 kb on - strand, within Xcc-8004.1268.1at 1208.752 kb on + strand, within Xcc-8004.1268.1at 1208.752 kb on + strand, within Xcc-8004.1268.1at 1208.753 kb on - strand, within Xcc-8004.1268.1at 1208.753 kb on - strand, within Xcc-8004.1268.1at 1208.753 kb on - strand, within Xcc-8004.1268.1at 1208.753 kb on - strand, within Xcc-8004.1268.1at 1208.789 kb on - strand, within Xcc-8004.1268.1at 1208.848 kb on + strand, within Xcc-8004.1268.1at 1208.848 kb on + strand, within Xcc-8004.1268.1at 1208.848 kb on + strand, within Xcc-8004.1268.1at 1208.848 kb on + strand, within Xcc-8004.1268.1at 1208.848 kb on + strand, within Xcc-8004.1268.1at 1208.849 kb on - strand, within Xcc-8004.1268.1at 1208.973 kb on + strand, within Xcc-8004.1268.1at 1208.974 kb on - strand, within Xcc-8004.1268.1at 1209.004 kb on + strand, within Xcc-8004.1268.1at 1209.004 kb on + strand, within Xcc-8004.1268.1at 1209.005 kb on - strand, within Xcc-8004.1268.1at 1209.005 kb on - strand, within Xcc-8004.1268.1at 1209.005 kb on - strand, within Xcc-8004.1268.1at 1209.005 kb on - strand, within Xcc-8004.1268.1at 1209.005 kb on - strand, within Xcc-8004.1268.1at 1209.067 kb on + strand, within Xcc-8004.1268.1at 1209.067 kb on + strand, within Xcc-8004.1268.1at 1209.067 kb on + strand, within Xcc-8004.1268.1at 1209.068 kb on - strand, within Xcc-8004.1268.1at 1209.068 kb on - strand, within Xcc-8004.1268.1at 1209.068 kb on - strand, within Xcc-8004.1268.1at 1209.094 kb on + strand, within Xcc-8004.1268.1at 1209.118 kb on + strand, within Xcc-8004.1268.1at 1209.118 kb on + strand, within Xcc-8004.1268.1at 1209.118 kb on + strand, within Xcc-8004.1268.1at 1209.118 kb on + strand, within Xcc-8004.1268.1at 1209.118 kb on + strand, within Xcc-8004.1268.1at 1209.119 kb on - strand, within Xcc-8004.1268.1at 1209.119 kb on - strand, within Xcc-8004.1268.1at 1209.149 kb on + strand, within Xcc-8004.1268.1at 1209.151 kb on + strand, within Xcc-8004.1268.1at 1209.152 kb on - strand, within Xcc-8004.1268.1at 1209.170 kb on + strand, within Xcc-8004.1268.1at 1209.171 kb on - strand, within Xcc-8004.1268.1at 1209.280 kb on - strand, within Xcc-8004.1268.1at 1209.457 kb on + strand, within Xcc-8004.1268.1at 1209.458 kb on - strand, within Xcc-8004.1268.1at 1209.458 kb on - strand, within Xcc-8004.1268.1at 1209.469 kb on + strand, within Xcc-8004.1268.1at 1209.709 kb on + strand, within Xcc-8004.1268.1at 1209.710 kb on - strand, within Xcc-8004.1268.1at 1209.710 kb on - strand, within Xcc-8004.1268.1at 1209.710 kb on - strand, within Xcc-8004.1268.1at 1209.710 kb on - strand, within Xcc-8004.1268.1at 1209.710 kb on - strand, within Xcc-8004.1268.1at 1209.710 kb on - strand, within Xcc-8004.1268.1at 1209.741 kb on + strand, within Xcc-8004.1268.1at 1209.741 kb on + strand, within Xcc-8004.1268.1at 1209.799 kb on + strand, within Xcc-8004.1268.1at 1209.945 kb on + strandat 1209.946 kb on - strandat 1209.970 kb on + strandat 1209.971 kb on - strandat 1209.971 kb on - strandat 1210.192 kb on + strandat 1210.192 kb on + strandat 1210.230 kb on - strandat 1210.293 kb on - strandat 1210.293 kb on - strandat 1210.293 kb on - strandat 1210.405 kb on + strandat 1210.405 kb on + strandat 1210.406 kb on - strandat 1210.553 kb on + strandat 1210.553 kb on + strandat 1210.553 kb on + strandat 1210.554 kb on - strandat 1210.554 kb on - strandat 1210.660 kb on - strand, within Xcc-8004.1269.1at 1210.660 kb on - strand, within Xcc-8004.1269.1at 1210.660 kb on - strand, within Xcc-8004.1269.1at 1210.660 kb on - strand, within Xcc-8004.1269.1at 1210.660 kb on - strand, within Xcc-8004.1269.1at 1210.660 kb on - strand, within Xcc-8004.1269.1at 1210.708 kb on + strand, within Xcc-8004.1269.1at 1210.708 kb on + strand, within Xcc-8004.1269.1at 1210.869 kb on + strand, within Xcc-8004.1269.1at 1210.870 kb on - strand, within Xcc-8004.1269.1at 1210.870 kb on - strand, within Xcc-8004.1269.1at 1210.870 kb on - strand, within Xcc-8004.1269.1at 1210.904 kb on + strand, within Xcc-8004.1269.1at 1210.904 kb on + strand, within Xcc-8004.1269.1at 1210.905 kb on - strand, within Xcc-8004.1269.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
remove
1,207,245 - Xcc-8004.1267.1 0.67 +1.3
1,207,245 - Xcc-8004.1267.1 0.67 -1.1
1,207,265 + Xcc-8004.1267.1 0.68 +1.1
1,207,296 + Xcc-8004.1267.1 0.70 +2.4
1,207,296 + Xcc-8004.1267.1 0.70 +1.6
1,207,296 + Xcc-8004.1267.1 0.70 +0.2
1,207,297 - Xcc-8004.1267.1 0.70 +0.2
1,207,297 - Xcc-8004.1267.1 0.70 +2.8
1,207,475 + Xcc-8004.1267.1 0.82 +2.3
1,207,475 + Xcc-8004.1267.1 0.82 +1.1
1,207,475 + Xcc-8004.1267.1 0.82 -2.3
1,207,476 - Xcc-8004.1267.1 0.82 -1.0
1,207,476 - Xcc-8004.1267.1 0.82 -0.7
1,207,476 - Xcc-8004.1267.1 0.82 +3.4
1,207,476 - Xcc-8004.1267.1 0.82 -0.7
1,207,476 - Xcc-8004.1267.1 0.82 +0.6
1,207,516 + Xcc-8004.1267.1 0.85 -0.3
1,207,516 + Xcc-8004.1267.1 0.85 +0.2
1,207,517 - Xcc-8004.1267.1 0.85 -0.7
1,207,942 + -0.1
1,207,968 + +1.6
1,207,969 - -0.2
1,207,969 - +1.2
1,207,969 - -2.8
1,207,969 - +0.0
1,207,969 - +0.4
1,207,976 + -1.2
1,207,977 - +0.8
1,208,211 + -0.5
1,208,211 + -0.6
1,208,212 - -1.6
1,208,278 + -1.5
1,208,279 - +0.0
1,208,279 - -1.5
1,208,279 - -0.4
1,208,365 + Xcc-8004.1268.1 0.11 +0.6
1,208,365 + Xcc-8004.1268.1 0.11 -0.2
1,208,365 + Xcc-8004.1268.1 0.11 -1.4
1,208,366 - Xcc-8004.1268.1 0.11 -0.9
1,208,366 - Xcc-8004.1268.1 0.11 +1.3
1,208,530 + Xcc-8004.1268.1 0.19 -1.2
1,208,539 + Xcc-8004.1268.1 0.19 +0.3
1,208,539 + Xcc-8004.1268.1 0.19 +0.0
1,208,539 + Xcc-8004.1268.1 0.19 -2.5
1,208,539 + Xcc-8004.1268.1 0.19 +1.3
1,208,539 + Xcc-8004.1268.1 0.19 +1.2
1,208,539 + Xcc-8004.1268.1 0.19 -1.6
1,208,540 - Xcc-8004.1268.1 0.19 -0.5
1,208,540 - Xcc-8004.1268.1 0.19 -0.2
1,208,540 - Xcc-8004.1268.1 0.19 -1.2
1,208,540 - Xcc-8004.1268.1 0.19 -0.9
1,208,540 - Xcc-8004.1268.1 0.19 -2.1
1,208,638 + Xcc-8004.1268.1 0.24 +1.5
1,208,638 + Xcc-8004.1268.1 0.24 -2.7
1,208,639 - Xcc-8004.1268.1 0.25 +2.8
1,208,639 - Xcc-8004.1268.1 0.25 +0.0
1,208,639 - Xcc-8004.1268.1 0.25 -2.5
1,208,639 - Xcc-8004.1268.1 0.25 +0.6
1,208,639 - Xcc-8004.1268.1 0.25 -1.9
1,208,639 - Xcc-8004.1268.1 0.25 -0.7
1,208,639 - Xcc-8004.1268.1 0.25 +1.6
1,208,747 + Xcc-8004.1268.1 0.30 +1.3
1,208,747 + Xcc-8004.1268.1 0.30 -1.4
1,208,748 - Xcc-8004.1268.1 0.30 +4.6
1,208,748 - Xcc-8004.1268.1 0.30 +0.3
1,208,748 - Xcc-8004.1268.1 0.30 -2.5
1,208,748 - Xcc-8004.1268.1 0.30 +1.6
1,208,752 + Xcc-8004.1268.1 0.30 +0.4
1,208,752 + Xcc-8004.1268.1 0.30 -0.6
1,208,753 - Xcc-8004.1268.1 0.30 -0.4
1,208,753 - Xcc-8004.1268.1 0.30 +2.0
1,208,753 - Xcc-8004.1268.1 0.30 -0.9
1,208,753 - Xcc-8004.1268.1 0.30 -1.6
1,208,789 - Xcc-8004.1268.1 0.32 +2.4
1,208,848 + Xcc-8004.1268.1 0.35 +1.3
1,208,848 + Xcc-8004.1268.1 0.35 -0.9
1,208,848 + Xcc-8004.1268.1 0.35 -0.4
1,208,848 + Xcc-8004.1268.1 0.35 +6.5
1,208,848 + Xcc-8004.1268.1 0.35 +1.9
1,208,849 - Xcc-8004.1268.1 0.35 +1.0
1,208,973 + Xcc-8004.1268.1 0.42 -1.0
1,208,974 - Xcc-8004.1268.1 0.42 +0.5
1,209,004 + Xcc-8004.1268.1 0.43 +0.4
1,209,004 + Xcc-8004.1268.1 0.43 -1.9
1,209,005 - Xcc-8004.1268.1 0.43 -1.9
1,209,005 - Xcc-8004.1268.1 0.43 +2.0
1,209,005 - Xcc-8004.1268.1 0.43 +2.0
1,209,005 - Xcc-8004.1268.1 0.43 +0.4
1,209,005 - Xcc-8004.1268.1 0.43 -0.6
1,209,067 + Xcc-8004.1268.1 0.46 +2.5
1,209,067 + Xcc-8004.1268.1 0.46 +1.4
1,209,067 + Xcc-8004.1268.1 0.46 +0.6
1,209,068 - Xcc-8004.1268.1 0.46 +0.5
1,209,068 - Xcc-8004.1268.1 0.46 +0.9
1,209,068 - Xcc-8004.1268.1 0.46 +0.6
1,209,094 + Xcc-8004.1268.1 0.48 +0.6
1,209,118 + Xcc-8004.1268.1 0.49 -1.6
1,209,118 + Xcc-8004.1268.1 0.49 +2.0
1,209,118 + Xcc-8004.1268.1 0.49 -0.2
1,209,118 + Xcc-8004.1268.1 0.49 -0.9
1,209,118 + Xcc-8004.1268.1 0.49 -2.0
1,209,119 - Xcc-8004.1268.1 0.49 -0.7
1,209,119 - Xcc-8004.1268.1 0.49 -1.7
1,209,149 + Xcc-8004.1268.1 0.50 +0.0
1,209,151 + Xcc-8004.1268.1 0.51 -2.3
1,209,152 - Xcc-8004.1268.1 0.51 -2.4
1,209,170 + Xcc-8004.1268.1 0.52 +0.7
1,209,171 - Xcc-8004.1268.1 0.52 -0.7
1,209,280 - Xcc-8004.1268.1 0.57 +2.0
1,209,457 + Xcc-8004.1268.1 0.66 +1.3
1,209,458 - Xcc-8004.1268.1 0.66 -0.2
1,209,458 - Xcc-8004.1268.1 0.66 +1.6
1,209,469 + Xcc-8004.1268.1 0.67 -0.3
1,209,709 + Xcc-8004.1268.1 0.79 +0.0
1,209,710 - Xcc-8004.1268.1 0.79 -0.7
1,209,710 - Xcc-8004.1268.1 0.79 +0.7
1,209,710 - Xcc-8004.1268.1 0.79 -0.6
1,209,710 - Xcc-8004.1268.1 0.79 +0.4
1,209,710 - Xcc-8004.1268.1 0.79 +0.5
1,209,710 - Xcc-8004.1268.1 0.79 -2.0
1,209,741 + Xcc-8004.1268.1 0.81 -1.2
1,209,741 + Xcc-8004.1268.1 0.81 +0.1
1,209,799 + Xcc-8004.1268.1 0.84 -0.9
1,209,945 + +1.1
1,209,946 - +0.9
1,209,970 + -1.2
1,209,971 - +0.4
1,209,971 - +1.7
1,210,192 + -0.7
1,210,192 + -0.6
1,210,230 - +0.0
1,210,293 - +4.7
1,210,293 - +0.0
1,210,293 - +0.8
1,210,405 + -2.3
1,210,405 + +2.1
1,210,406 - +3.5
1,210,553 + +1.7
1,210,553 + -2.1
1,210,553 + +1.6
1,210,554 - -0.7
1,210,554 - +1.3
1,210,660 - Xcc-8004.1269.1 0.11 -1.7
1,210,660 - Xcc-8004.1269.1 0.11 -2.0
1,210,660 - Xcc-8004.1269.1 0.11 +3.2
1,210,660 - Xcc-8004.1269.1 0.11 +1.2
1,210,660 - Xcc-8004.1269.1 0.11 +1.3
1,210,660 - Xcc-8004.1269.1 0.11 -1.1
1,210,708 + Xcc-8004.1269.1 0.12 +2.0
1,210,708 + Xcc-8004.1269.1 0.12 -0.4
1,210,869 + Xcc-8004.1269.1 0.17 +1.6
1,210,870 - Xcc-8004.1269.1 0.17 +0.6
1,210,870 - Xcc-8004.1269.1 0.17 +6.7
1,210,870 - Xcc-8004.1269.1 0.17 +0.6
1,210,904 + Xcc-8004.1269.1 0.18 +2.1
1,210,904 + Xcc-8004.1269.1 0.18 +0.0
1,210,905 - Xcc-8004.1269.1 0.18 +0.5

Or see this region's nucleotide sequence