Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3379

Experiment: Choline Lysine 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 10 mM
3,507,280	+				+0.0
3,507,280	+				-1.1
3,507,325	+				+0.1
3,507,326	-				+0.3
3,507,326	-				-0.6
3,507,326	-				+0.2
3,507,348	+				+0.1
3,507,348	+				+0.8
3,507,348	+				-0.4
3,507,349	-				-0.3
3,507,349	-				+0.2
3,507,358	+				-0.0
3,507,358	+				-1.6
3,507,416	+				-0.1
3,507,416	+				-0.2
3,507,416	+				-0.1
3,507,416	+				-0.9
3,507,416	+				-0.2
3,507,416	+				+0.5
3,507,416	+				+0.7
3,507,416	+				-0.6
3,507,417	-				-1.2
3,507,417	-				-0.1
3,507,417	-				-0.2
3,507,417	-				-0.2
3,507,417	-				+0.1
3,507,417	-				-0.1
3,507,417	-				-0.6
3,507,417	-				-1.5
3,507,417	-				+0.2
3,507,417	-				+0.8
3,507,417	-				+0.4
3,507,417	-				-0.0
3,507,477	-		Ga0059261_3378	0.13	-0.6
3,507,671	+		Ga0059261_3378	0.38	+1.0
3,507,671	+		Ga0059261_3378	0.38	+0.1
3,507,671	+		Ga0059261_3378	0.38	-1.1
3,507,671	+				+0.8
3,507,671	+		Ga0059261_3378	0.38	-0.4
3,507,671	+		Ga0059261_3378	0.38	-0.1
3,507,672	-		Ga0059261_3378	0.38	+0.2
3,507,672	-		Ga0059261_3378	0.38	-1.1
3,507,672	-		Ga0059261_3378	0.38	+0.9
3,507,721	+		Ga0059261_3378	0.44	-0.8
3,507,721	+		Ga0059261_3378	0.44	+0.5
3,507,721	+		Ga0059261_3378	0.44	+0.1
3,507,721	+		Ga0059261_3378	0.44	-0.5
3,507,721	+				-0.2
3,507,721	+		Ga0059261_3378	0.44	-0.5
3,507,722	-		Ga0059261_3378	0.44	+0.4
3,507,722	-		Ga0059261_3378	0.44	-0.1
3,507,725	+		Ga0059261_3378	0.45	+0.3
3,507,725	+		Ga0059261_3378	0.45	-0.8
3,507,725	+		Ga0059261_3378	0.45	-0.2
3,507,725	+		Ga0059261_3378	0.45	+0.7
3,507,725	+		Ga0059261_3378	0.45	-0.2
3,507,725	+		Ga0059261_3378	0.45	-0.0
3,507,725	+		Ga0059261_3378	0.45	+0.1
3,507,725	+		Ga0059261_3378	0.45	-0.3
3,507,726	-		Ga0059261_3378	0.45	-1.9
3,507,726	-		Ga0059261_3378	0.45	-0.8
3,507,726	-		Ga0059261_3378	0.45	-1.1
3,507,791	+		Ga0059261_3378	0.53	+0.8
3,507,791	+		Ga0059261_3378	0.53	+0.1
3,507,791	+		Ga0059261_3378	0.53	-1.5
3,507,791	+		Ga0059261_3378	0.53	-0.5
3,507,791	+		Ga0059261_3378	0.53	-0.1
3,507,792	-		Ga0059261_3378	0.53	+0.5
3,507,884	-		Ga0059261_3378	0.65	+0.5
3,507,884	-		Ga0059261_3378	0.65	+0.6
3,507,965	+		Ga0059261_3378	0.75	+0.1
3,507,965	+		Ga0059261_3378	0.75	-0.3
3,507,965	+		Ga0059261_3378	0.75	-0.5
3,507,966	-		Ga0059261_3378	0.75	-1.0
3,507,966	-		Ga0059261_3378	0.75	-0.3
3,507,969	+		Ga0059261_3378	0.76	+0.1
3,508,058	+		Ga0059261_3378	0.87	-0.5
3,508,059	-		Ga0059261_3378	0.87	+0.1
3,508,059	-		Ga0059261_3378	0.87	-0.0
3,508,106	+				+0.5
3,508,107	-				-0.1
3,508,107	-				+0.3
3,508,266	+				+0.1
3,508,266	+				+0.1
3,508,267	-				+0.4
3,508,267	-				-0.4
3,508,413	+		Ga0059261_3379	0.21	+0.2
3,508,414	-		Ga0059261_3379	0.21	+0.5
3,508,422	+		Ga0059261_3379	0.22	-0.1
3,508,422	+		Ga0059261_3379	0.22	-0.2
3,508,423	-		Ga0059261_3379	0.22	+0.2
3,508,423	-		Ga0059261_3379	0.22	-0.5
3,508,423	-		Ga0059261_3379	0.22	+0.2
3,508,423	-		Ga0059261_3379	0.22	+0.6
3,508,423	-		Ga0059261_3379	0.22	+0.2
3,508,423	-		Ga0059261_3379	0.22	+0.2
3,508,423	-		Ga0059261_3379	0.22	+0.3
3,508,456	-		Ga0059261_3379	0.25	-0.2
3,508,456	-		Ga0059261_3379	0.25	+0.8
3,508,456	-		Ga0059261_3379	0.25	-0.5
3,508,609	-		Ga0059261_3379	0.40	+0.8
3,508,609	-		Ga0059261_3379	0.40	-0.7
3,508,609	-		Ga0059261_3379	0.40	-0.2
3,508,609	-		Ga0059261_3379	0.40	-2.0
3,508,609	-		Ga0059261_3379	0.40	+1.1
3,508,609	-		Ga0059261_3379	0.40	-0.2
3,508,609	-		Ga0059261_3379	0.40	+0.9
3,508,609	-		Ga0059261_3379	0.40	-0.4
3,508,621	+		Ga0059261_3379	0.41	-0.4
3,508,622	-		Ga0059261_3379	0.41	+0.9
3,508,776	+		Ga0059261_3379	0.56	+0.6
3,508,776	+		Ga0059261_3379	0.56	+1.3
3,508,777	-		Ga0059261_3379	0.56	+0.5
3,508,777	-		Ga0059261_3379	0.56	+0.6
3,508,777	-		Ga0059261_3379	0.56	-1.1
3,508,791	+		Ga0059261_3379	0.57	-0.2
3,508,791	+		Ga0059261_3379	0.57	-0.4
3,508,792	-		Ga0059261_3379	0.57	-0.1
3,508,792	-		Ga0059261_3379	0.57	-0.1
3,508,792	-		Ga0059261_3379	0.57	-0.2
3,508,792	-		Ga0059261_3379	0.57	-0.1
3,508,792	-		Ga0059261_3379	0.57	+1.0
3,508,792	-		Ga0059261_3379	0.57	+0.4
3,508,792	-		Ga0059261_3379	0.57	-1.5
3,508,998	+		Ga0059261_3379	0.77	-0.5
3,508,998	+		Ga0059261_3379	0.77	+0.4
3,508,998	+		Ga0059261_3379	0.77	-0.7
3,508,998	+		Ga0059261_3379	0.77	+1.0
3,508,999	-		Ga0059261_3379	0.77	+0.3
3,508,999	-		Ga0059261_3379	0.77	-0.5
3,508,999	-		Ga0059261_3379	0.77	+0.9
3,508,999	-		Ga0059261_3379	0.77	+0.1
3,508,999	-		Ga0059261_3379	0.77	+0.8
3,508,999	-		Ga0059261_3379	0.77	-0.3
3,509,108	+		Ga0059261_3379	0.87	+0.1
3,509,109	-		Ga0059261_3379	0.87	+0.4
3,509,304	-				+0.0
3,509,304	-				+0.2
3,509,304	-				+0.5
3,509,304	-				-0.3
3,509,304	-				+0.1
3,509,304	-				-0.3
3,509,304	-				+0.8
3,509,471	+				+0.8
3,509,471	+				-0.4
3,509,471	+				-1.2
3,509,471	+				-0.6
3,509,471	+				+0.9
3,509,472	-				+0.3
3,509,472	-				-0.0
3,509,472	-				+0.3
3,509,472	-				-1.1
3,509,472	-				-0.2
3,509,472	-				-0.5
3,509,472	-				-0.2
3,509,472	-				-0.2
3,509,528	+		Ga0059261_3380	0.12	-0.5
3,509,529	-		Ga0059261_3380	0.12	-0.5
3,509,586	-		Ga0059261_3380	0.15	-0.6
3,509,586	-		Ga0059261_3380	0.15	-0.2
3,509,586	-		Ga0059261_3380	0.15	+0.8
3,509,586	-		Ga0059261_3380	0.15	+0.1
3,509,591	+		Ga0059261_3380	0.15	+0.3
3,509,591	+		Ga0059261_3380	0.15	-1.7
3,509,591	+		Ga0059261_3380	0.15	-1.0
3,509,591	+		Ga0059261_3380	0.15	-0.4
3,509,591	+		Ga0059261_3380	0.15	-0.8
3,509,591	+		Ga0059261_3380	0.15	+1.6
3,509,591	+		Ga0059261_3380	0.15	+0.3
3,509,591	+		Ga0059261_3380	0.15	-0.2
3,509,591	+				+0.4
3,509,591	+		Ga0059261_3380	0.15	-0.2
3,509,591	+		Ga0059261_3380	0.15	+0.3
3,509,591	+		Ga0059261_3380	0.15	-0.8
3,509,591	+		Ga0059261_3380	0.15	+0.2
3,509,591	+		Ga0059261_3380	0.15	+0.5
3,509,592	-		Ga0059261_3380	0.15	-0.7
3,509,592	-		Ga0059261_3380	0.15	+0.8
3,509,592	-		Ga0059261_3380	0.15	-0.3
3,509,592	-		Ga0059261_3380	0.15	-0.5
3,509,592	-		Ga0059261_3380	0.15	+0.8
3,509,592	-		Ga0059261_3380	0.15	-0.6
3,509,592	-		Ga0059261_3380	0.15	+0.8
3,509,592	-		Ga0059261_3380	0.15	-0.5
3,509,592	-		Ga0059261_3380	0.15	+0.3
3,509,592	-		Ga0059261_3380	0.15	+0.4
3,509,592	-		Ga0059261_3380	0.15	-0.1
3,509,592	-		Ga0059261_3380	0.15	-0.9
3,509,592	-		Ga0059261_3380	0.15	+0.3
3,509,592	-		Ga0059261_3380	0.15	-1.6
3,509,592	-		Ga0059261_3380	0.15	+0.8
3,509,668	+		Ga0059261_3380	0.18	-0.3
3,509,669	-		Ga0059261_3380	0.18	-0.3
3,509,669	-		Ga0059261_3380	0.18	+0.4
3,509,669	-		Ga0059261_3380	0.18	-0.8
3,509,730	-		Ga0059261_3380	0.21	-0.2
3,509,840	+		Ga0059261_3380	0.26	-0.4
3,509,840	+		Ga0059261_3380	0.26	+0.1
3,509,841	-		Ga0059261_3380	0.26	-0.4
3,509,888	+		Ga0059261_3380	0.28	-0.1
3,509,889	-		Ga0059261_3380	0.28	+0.4
3,509,889	-		Ga0059261_3380	0.28	-0.3
3,509,889	-		Ga0059261_3380	0.28	+0.2
3,509,984	+		Ga0059261_3380	0.32	+1.1
3,509,984	+		Ga0059261_3380	0.32	-0.4
3,509,984	+		Ga0059261_3380	0.32	-0.2
3,509,984	+		Ga0059261_3380	0.32	-0.3
3,509,985	-		Ga0059261_3380	0.32	+0.6
3,510,040	-		Ga0059261_3380	0.34	+1.2
3,510,040	-		Ga0059261_3380	0.34	-0.8
3,510,086	+		Ga0059261_3380	0.36	+0.6
3,510,086	+		Ga0059261_3380	0.36	+0.9
3,510,086	+		Ga0059261_3380	0.36	-0.7
3,510,086	+		Ga0059261_3380	0.36	-0.4
3,510,086	+		Ga0059261_3380	0.36	+0.3
3,510,086	+		Ga0059261_3380	0.36	+0.2
3,510,086	+		Ga0059261_3380	0.36	+0.2
3,510,086	+		Ga0059261_3380	0.36	+0.4
3,510,086	+		Ga0059261_3380	0.36	-0.7
3,510,087	-		Ga0059261_3380	0.36	-0.4
3,510,087	-		Ga0059261_3380	0.36	-0.2
3,510,097	-		Ga0059261_3380	0.37	-0.2