Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2323

Experiment: Choline Lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2322 and Ga0059261_2323 overlap by 4 nucleotidesGa0059261_2323 and Ga0059261_2324 are separated by 98 nucleotidesGa0059261_2324 and Ga0059261_2325 are separated by 1 nucleotidesGa0059261_2325 and Ga0059261_2326 are separated by 3 nucleotides Ga0059261_2322: Ga0059261_2322 - phosphate:acyl-[acyl carrier protein] acyltransferase, at 2,433,276 to 2,434,307 _2322 Ga0059261_2323: Ga0059261_2323 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 2,434,304 to 2,435,284 _2323 Ga0059261_2324: Ga0059261_2324 - integration host factor, alpha subunit, at 2,435,383 to 2,435,682 _2324 Ga0059261_2325: Ga0059261_2325 - MerR HTH family regulatory protein, at 2,435,684 to 2,436,034 _2325 Ga0059261_2326: Ga0059261_2326 - Phosphohistidine phosphatase SixA, at 2,436,038 to 2,436,580 _2326 Position (kb) 2434 2435 2436Strain fitness (log2 ratio) -2 -1 0 1at 2435.314 kb on + strandat 2435.320 kb on - strandat 2435.320 kb on - strandat 2435.350 kb on + strandat 2435.350 kb on + strandat 2435.350 kb on + strandat 2435.351 kb on - strandat 2435.351 kb on - strandat 2435.351 kb on - strandat 2435.351 kb on - strandat 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.493 kb on + strand, within Ga0059261_2324at 2435.494 kb on - strand, within Ga0059261_2324at 2435.494 kb on - strand, within Ga0059261_2324at 2435.494 kb on - strand, within Ga0059261_2324at 2435.494 kb on - strand, within Ga0059261_2324at 2435.790 kb on - strand, within Ga0059261_2325at 2435.790 kb on - strand, within Ga0059261_2325at 2435.846 kb on + strand, within Ga0059261_2325at 2435.846 kb on + strand, within Ga0059261_2325at 2435.847 kb on - strand, within Ga0059261_2325at 2435.847 kb on - strand, within Ga0059261_2325at 2435.847 kb on - strand, within Ga0059261_2325at 2435.850 kb on - strand, within Ga0059261_2325at 2435.875 kb on - strand, within Ga0059261_2325at 2435.909 kb on + strand, within Ga0059261_2325at 2435.909 kb on + strand, within Ga0059261_2325at 2435.909 kb on + strand, within Ga0059261_2325at 2435.910 kb on - strand, within Ga0059261_2325at 2435.910 kb on - strand, within Ga0059261_2325at 2436.194 kb on + strand, within Ga0059261_2326at 2436.240 kb on - strandat 2436.254 kb on - strand, within Ga0059261_2326

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 10 mM
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2,435,314 + -0.1
2,435,320 - +0.3
2,435,320 - +0.3
2,435,350 + +0.0
2,435,350 + +0.3
2,435,350 + +0.1
2,435,351 - -0.1
2,435,351 - -0.9
2,435,351 - -0.2
2,435,351 - +0.4
2,435,493 + Ga0059261_2324 0.37 -0.7
2,435,493 + Ga0059261_2324 0.37 -0.7
2,435,493 + Ga0059261_2324 0.37 +0.6
2,435,493 + Ga0059261_2324 0.37 -0.1
2,435,493 + Ga0059261_2324 0.37 -0.2
2,435,493 + Ga0059261_2324 0.37 -0.1
2,435,493 + Ga0059261_2324 0.37 -0.4
2,435,493 + Ga0059261_2324 0.37 -0.9
2,435,493 + Ga0059261_2324 0.37 +0.2
2,435,493 + Ga0059261_2324 0.37 -2.2
2,435,493 + Ga0059261_2324 0.37 -0.7
2,435,494 - Ga0059261_2324 0.37 +0.2
2,435,494 - Ga0059261_2324 0.37 -0.4
2,435,494 - Ga0059261_2324 0.37 -0.9
2,435,494 - Ga0059261_2324 0.37 -0.7
2,435,790 - Ga0059261_2325 0.30 -0.1
2,435,790 - Ga0059261_2325 0.30 +0.3
2,435,846 + Ga0059261_2325 0.46 -0.9
2,435,846 + Ga0059261_2325 0.46 +0.5
2,435,847 - Ga0059261_2325 0.46 +0.0
2,435,847 - Ga0059261_2325 0.46 -0.1
2,435,847 - Ga0059261_2325 0.46 +0.6
2,435,850 - Ga0059261_2325 0.47 -0.2
2,435,875 - Ga0059261_2325 0.54 +0.1
2,435,909 + Ga0059261_2325 0.64 -0.1
2,435,909 + Ga0059261_2325 0.64 +0.1
2,435,909 + Ga0059261_2325 0.64 -0.4
2,435,910 - Ga0059261_2325 0.64 -0.2
2,435,910 - Ga0059261_2325 0.64 -0.4
2,436,194 + Ga0059261_2326 0.29 +1.2
2,436,240 - +0.9
2,436,254 - Ga0059261_2326 0.40 +0.2

Or see this region's nucleotide sequence