Experiment: Choline Lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1034 and Ga0059261_1035 overlap by 4 nucleotides Ga0059261_1035 and Ga0059261_1036 are separated by 3 nucleotides Ga0059261_1036 and Ga0059261_1037 are separated by 56 nucleotides Ga0059261_1037 and Ga0059261_1038 are separated by 29 nucleotides Ga0059261_1038 and Ga0059261_1039 are separated by 44 nucleotides
Ga0059261_1034: Ga0059261_1034 - haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 1,071,848 to 1,072,507
_1034
Ga0059261_1035: Ga0059261_1035 - hypothetical protein, at 1,072,504 to 1,072,725
_1035
Ga0059261_1036: Ga0059261_1036 - Chaperone required for the assembly of the mitochondrial F1-ATPase, at 1,072,729 to 1,073,418
_1036
Ga0059261_1037: Ga0059261_1037 - hypothetical protein, at 1,073,475 to 1,074,065
_1037
Ga0059261_1038: Ga0059261_1038 - guanylate kinase (EC 2.7.4.8), at 1,074,095 to 1,074,769
_1038
Ga0059261_1039: Ga0059261_1039 - hypothetical protein, at 1,074,814 to 1,075,011
_1039
Position (kb)
1073
1074
1075 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1072.503 kb on + strand at 1072.531 kb on + strand, within Ga0059261_1035 at 1072.657 kb on + strand at 1072.657 kb on + strand, within Ga0059261_1035 at 1072.657 kb on + strand, within Ga0059261_1035 at 1072.710 kb on + strand at 1072.723 kb on + strand at 1073.417 kb on - strand at 1073.417 kb on - strand at 1073.593 kb on + strand, within Ga0059261_1037 at 1073.593 kb on + strand, within Ga0059261_1037 at 1073.593 kb on + strand, within Ga0059261_1037 at 1073.593 kb on + strand, within Ga0059261_1037 at 1073.594 kb on - strand, within Ga0059261_1037 at 1073.594 kb on - strand, within Ga0059261_1037 at 1073.594 kb on - strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.602 kb on + strand, within Ga0059261_1037 at 1073.603 kb on - strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.647 kb on + strand, within Ga0059261_1037 at 1073.648 kb on - strand, within Ga0059261_1037 at 1073.648 kb on - strand, within Ga0059261_1037 at 1073.648 kb on - strand, within Ga0059261_1037 at 1073.648 kb on - strand, within Ga0059261_1037 at 1073.789 kb on + strand, within Ga0059261_1037 at 1073.790 kb on - strand, within Ga0059261_1037 at 1073.980 kb on + strand, within Ga0059261_1037 at 1073.980 kb on + strand, within Ga0059261_1037 at 1073.980 kb on + strand, within Ga0059261_1037 at 1073.981 kb on - strand, within Ga0059261_1037 at 1073.981 kb on - strand, within Ga0059261_1037 at 1074.012 kb on + strand at 1074.012 kb on + strand at 1074.012 kb on + strand at 1074.012 kb on + strand at 1074.012 kb on + strand at 1074.013 kb on - strand at 1074.013 kb on - strand at 1074.013 kb on - strand at 1074.051 kb on + strand at 1074.052 kb on - strand at 1074.052 kb on - strand at 1074.097 kb on - strand at 1074.815 kb on + strand at 1074.816 kb on - strand at 1074.845 kb on + strand at 1074.845 kb on + strand, within Ga0059261_1039 at 1074.845 kb on + strand, within Ga0059261_1039 at 1074.845 kb on + strand, within Ga0059261_1039 at 1074.845 kb on + strand, within Ga0059261_1039 at 1074.846 kb on - strand, within Ga0059261_1039 at 1074.846 kb on - strand, within Ga0059261_1039 at 1074.863 kb on + strand, within Ga0059261_1039 at 1074.863 kb on + strand, within Ga0059261_1039 at 1074.863 kb on + strand, within Ga0059261_1039 at 1074.863 kb on + strand, within Ga0059261_1039 at 1074.863 kb on + strand, within Ga0059261_1039 at 1074.863 kb on + strand, within Ga0059261_1039 at 1074.864 kb on - strand, within Ga0059261_1039 at 1074.864 kb on - strand, within Ga0059261_1039 at 1074.864 kb on - strand, within Ga0059261_1039 at 1074.864 kb on - strand, within Ga0059261_1039 at 1074.864 kb on - strand, within Ga0059261_1039 at 1074.864 kb on - strand, within Ga0059261_1039 at 1075.011 kb on + strand at 1075.011 kb on + strand at 1075.011 kb on + strand at 1075.011 kb on + strand at 1075.012 kb on - strand at 1075.012 kb on - strand at 1075.012 kb on - strand at 1075.012 kb on - strand at 1075.028 kb on + strand at 1075.028 kb on + strand at 1075.028 kb on + strand at 1075.028 kb on + strand at 1075.029 kb on - strand at 1075.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 10 mM remove 1,072,503 + +1.8 1,072,531 + Ga0059261_1035 0.12 -2.4 1,072,657 + -1.5 1,072,657 + Ga0059261_1035 0.69 -0.6 1,072,657 + Ga0059261_1035 0.69 -0.1 1,072,710 + -0.8 1,072,723 + -0.5 1,073,417 - -0.7 1,073,417 - +0.3 1,073,593 + Ga0059261_1037 0.20 +0.5 1,073,593 + Ga0059261_1037 0.20 +0.0 1,073,593 + Ga0059261_1037 0.20 -0.2 1,073,593 + Ga0059261_1037 0.20 +1.6 1,073,594 - Ga0059261_1037 0.20 -0.6 1,073,594 - Ga0059261_1037 0.20 -1.2 1,073,594 - Ga0059261_1037 0.20 +0.7 1,073,602 + Ga0059261_1037 0.21 -0.5 1,073,602 + Ga0059261_1037 0.21 +0.2 1,073,602 + Ga0059261_1037 0.21 -0.2 1,073,602 + Ga0059261_1037 0.21 -0.5 1,073,602 + Ga0059261_1037 0.21 +0.1 1,073,603 - Ga0059261_1037 0.22 +0.1 1,073,647 + Ga0059261_1037 0.29 +0.2 1,073,647 + Ga0059261_1037 0.29 -0.4 1,073,647 + Ga0059261_1037 0.29 -1.5 1,073,647 + Ga0059261_1037 0.29 +0.0 1,073,647 + Ga0059261_1037 0.29 +0.2 1,073,647 + Ga0059261_1037 0.29 -1.0 1,073,647 + Ga0059261_1037 0.29 +0.2 1,073,648 - Ga0059261_1037 0.29 -0.9 1,073,648 - Ga0059261_1037 0.29 -1.4 1,073,648 - Ga0059261_1037 0.29 -0.3 1,073,648 - Ga0059261_1037 0.29 -0.2 1,073,789 + Ga0059261_1037 0.53 +0.1 1,073,790 - Ga0059261_1037 0.53 -1.3 1,073,980 + Ga0059261_1037 0.85 +0.8 1,073,980 + Ga0059261_1037 0.85 +0.1 1,073,980 + Ga0059261_1037 0.85 -0.2 1,073,981 - Ga0059261_1037 0.86 +0.9 1,073,981 - Ga0059261_1037 0.86 +0.6 1,074,012 + -0.2 1,074,012 + -0.1 1,074,012 + +0.0 1,074,012 + +0.2 1,074,012 + -0.0 1,074,013 - -0.2 1,074,013 - +0.8 1,074,013 - -1.8 1,074,051 + +0.0 1,074,052 - -0.1 1,074,052 - -0.4 1,074,097 - -0.5 1,074,815 + -0.8 1,074,816 - +0.4 1,074,845 + +0.4 1,074,845 + Ga0059261_1039 0.16 +1.0 1,074,845 + Ga0059261_1039 0.16 +0.3 1,074,845 + Ga0059261_1039 0.16 +1.4 1,074,845 + Ga0059261_1039 0.16 +0.7 1,074,846 - Ga0059261_1039 0.16 +0.2 1,074,846 - Ga0059261_1039 0.16 +0.6 1,074,863 + Ga0059261_1039 0.25 +1.1 1,074,863 + Ga0059261_1039 0.25 +0.5 1,074,863 + Ga0059261_1039 0.25 +0.0 1,074,863 + Ga0059261_1039 0.25 +0.3 1,074,863 + Ga0059261_1039 0.25 +0.6 1,074,863 + Ga0059261_1039 0.25 -1.3 1,074,864 - Ga0059261_1039 0.25 -0.7 1,074,864 - Ga0059261_1039 0.25 +0.8 1,074,864 - Ga0059261_1039 0.25 +0.1 1,074,864 - Ga0059261_1039 0.25 +0.0 1,074,864 - Ga0059261_1039 0.25 -0.1 1,074,864 - Ga0059261_1039 0.25 +0.7 1,075,011 + +0.5 1,075,011 + -0.4 1,075,011 + +0.1 1,075,011 + +0.3 1,075,012 - -2.1 1,075,012 - -0.5 1,075,012 - +0.1 1,075,012 - +0.9 1,075,028 + +0.3 1,075,028 + -0.9 1,075,028 + +0.9 1,075,028 + -0.5 1,075,029 - +0.7 1,075,029 - -0.0
Or see this region's nucleotide sequence