Strain Fitness in Rahnella sp. WP5 around EX31_RS24730

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24725 and EX31_RS24730 are separated by 161 nucleotidesEX31_RS24730 and EX31_RS24735 are separated by 90 nucleotides EX31_RS24725: EX31_RS24725 - aminodeoxychorismate synthase component 1, at 714,880 to 716,256 _RS24725 EX31_RS24730: EX31_RS24730 - YoaH family protein, at 716,418 to 716,600 _RS24730 EX31_RS24735: EX31_RS24735 - formate-dependent phosphoribosylglycinamide formyltransferase, at 716,691 to 717,869 _RS24735 Position (kb) 716 717Strain fitness (log2 ratio) -2 -1 0 1 2 3at 715.642 kb on - strand, within EX31_RS24725at 715.642 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.672 kb on + strand, within EX31_RS24725at 715.690 kb on - strand, within EX31_RS24725at 715.690 kb on - strand, within EX31_RS24725at 715.711 kb on + strand, within EX31_RS24725at 715.712 kb on - strand, within EX31_RS24725at 715.712 kb on - strand, within EX31_RS24725at 715.762 kb on + strand, within EX31_RS24725at 715.763 kb on - strand, within EX31_RS24725at 715.807 kb on + strand, within EX31_RS24725at 715.808 kb on - strand, within EX31_RS24725at 715.808 kb on - strand, within EX31_RS24725at 715.838 kb on + strand, within EX31_RS24725at 715.839 kb on - strand, within EX31_RS24725at 715.839 kb on - strand, within EX31_RS24725at 715.839 kb on - strand, within EX31_RS24725at 715.978 kb on + strand, within EX31_RS24725at 716.066 kb on - strand, within EX31_RS24725at 716.125 kb on - strandat 716.125 kb on - strandat 716.155 kb on + strandat 716.155 kb on + strandat 716.156 kb on - strandat 716.201 kb on - strandat 716.201 kb on - strandat 716.221 kb on + strandat 716.221 kb on + strandat 716.222 kb on - strandat 716.288 kb on - strandat 716.356 kb on + strandat 716.356 kb on + strandat 716.356 kb on + strandat 716.357 kb on - strandat 716.357 kb on - strandat 716.358 kb on + strandat 716.358 kb on + strandat 716.359 kb on - strandat 716.402 kb on - strandat 716.429 kb on + strandat 716.429 kb on + strandat 716.429 kb on + strandat 716.430 kb on - strandat 716.430 kb on - strandat 716.430 kb on - strandat 716.430 kb on - strandat 716.440 kb on + strand, within EX31_RS24730at 716.441 kb on - strand, within EX31_RS24730at 716.441 kb on - strand, within EX31_RS24730at 716.552 kb on + strand, within EX31_RS24730at 716.552 kb on + strand, within EX31_RS24730at 716.552 kb on + strand, within EX31_RS24730at 716.599 kb on - strandat 716.790 kb on - strandat 716.980 kb on - strand, within EX31_RS24735at 717.257 kb on + strand, within EX31_RS24735at 717.332 kb on - strand, within EX31_RS24735at 717.332 kb on - strand, within EX31_RS24735at 717.476 kb on - strand, within EX31_RS24735

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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715,642 - EX31_RS24725 0.55 +0.1
715,642 - EX31_RS24725 0.55 +0.5
715,644 - EX31_RS24725 0.55 -0.3
715,644 - EX31_RS24725 0.55 +0.3
715,644 - EX31_RS24725 0.55 +2.5
715,644 - EX31_RS24725 0.55 +2.4
715,672 + EX31_RS24725 0.58 -0.5
715,690 - EX31_RS24725 0.59 +1.1
715,690 - EX31_RS24725 0.59 -0.7
715,711 + EX31_RS24725 0.60 +3.3
715,712 - EX31_RS24725 0.60 -0.5
715,712 - EX31_RS24725 0.60 -0.7
715,762 + EX31_RS24725 0.64 +1.1
715,763 - EX31_RS24725 0.64 +0.7
715,807 + EX31_RS24725 0.67 -1.2
715,808 - EX31_RS24725 0.67 +1.1
715,808 - EX31_RS24725 0.67 +0.9
715,838 + EX31_RS24725 0.70 -1.2
715,839 - EX31_RS24725 0.70 +2.1
715,839 - EX31_RS24725 0.70 -0.1
715,839 - EX31_RS24725 0.70 +0.1
715,978 + EX31_RS24725 0.80 +0.7
716,066 - EX31_RS24725 0.86 +3.1
716,125 - +1.2
716,125 - -0.2
716,155 + -0.2
716,155 + +0.7
716,156 - +1.6
716,201 - +1.3
716,201 - -0.8
716,221 + -0.1
716,221 + +0.4
716,222 - +0.5
716,288 - +1.1
716,356 + +1.1
716,356 + -0.5
716,356 + -1.2
716,357 - -0.5
716,357 - -1.4
716,358 + +0.5
716,358 + +0.9
716,359 - +0.6
716,402 - +0.6
716,429 + -1.6
716,429 + -2.6
716,429 + +0.9
716,430 - +0.3
716,430 - +1.4
716,430 - +0.3
716,430 - +0.1
716,440 + EX31_RS24730 0.12 +2.3
716,441 - EX31_RS24730 0.13 +3.0
716,441 - EX31_RS24730 0.13 -0.9
716,552 + EX31_RS24730 0.73 -0.9
716,552 + EX31_RS24730 0.73 +1.1
716,552 + EX31_RS24730 0.73 +0.6
716,599 - +2.1
716,790 - -0.9
716,980 - EX31_RS24735 0.25 +0.1
717,257 + EX31_RS24735 0.48 -0.5
717,332 - EX31_RS24735 0.54 +0.1
717,332 - EX31_RS24735 0.54 -2.1
717,476 - EX31_RS24735 0.67 +0.1

Or see this region's nucleotide sequence