Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24705 and EX31_RS24710 are separated by 76 nucleotides EX31_RS24710 and EX31_RS24715 are separated by 443 nucleotides
EX31_RS24705: EX31_RS24705 - TerC family protein, at 709,037 to 710,596
_RS24705
EX31_RS24710: EX31_RS24710 - EAL domain-containing protein, at 710,673 to 712,265
_RS24710
EX31_RS24715: EX31_RS24715 - L-serine ammonia-lyase, at 712,709 to 714,073
_RS24715
Position (kb) 710
711
712
713 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 709.674 kb on - strand, within EX31_RS24705 at 709.777 kb on + strand, within EX31_RS24705 at 709.789 kb on + strand, within EX31_RS24705 at 709.789 kb on + strand, within EX31_RS24705 at 709.789 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.852 kb on - strand, within EX31_RS24705 at 709.852 kb on - strand, within EX31_RS24705 at 710.014 kb on + strand, within EX31_RS24705 at 710.197 kb on + strand, within EX31_RS24705 at 710.338 kb on + strand, within EX31_RS24705 at 710.338 kb on + strand, within EX31_RS24705 at 710.350 kb on + strand, within EX31_RS24705 at 710.755 kb on - strand at 710.755 kb on - strand at 710.755 kb on - strand at 710.755 kb on - strand at 710.776 kb on + strand at 710.777 kb on - strand at 710.816 kb on - strand at 710.820 kb on + strand at 710.821 kb on - strand at 710.860 kb on - strand, within EX31_RS24710 at 710.984 kb on - strand, within EX31_RS24710 at 711.069 kb on + strand, within EX31_RS24710 at 711.069 kb on + strand, within EX31_RS24710 at 711.069 kb on + strand, within EX31_RS24710 at 711.070 kb on - strand, within EX31_RS24710 at 711.171 kb on - strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.197 kb on + strand, within EX31_RS24710 at 711.197 kb on + strand, within EX31_RS24710 at 711.197 kb on + strand, within EX31_RS24710 at 711.198 kb on - strand, within EX31_RS24710 at 711.205 kb on + strand, within EX31_RS24710 at 711.228 kb on + strand, within EX31_RS24710 at 711.309 kb on - strand, within EX31_RS24710 at 711.309 kb on - strand, within EX31_RS24710 at 711.374 kb on + strand, within EX31_RS24710 at 711.374 kb on + strand, within EX31_RS24710 at 711.374 kb on + strand, within EX31_RS24710 at 711.374 kb on + strand, within EX31_RS24710 at 711.375 kb on - strand, within EX31_RS24710 at 711.396 kb on - strand, within EX31_RS24710 at 711.396 kb on - strand, within EX31_RS24710 at 711.399 kb on - strand, within EX31_RS24710 at 711.399 kb on - strand, within EX31_RS24710 at 711.420 kb on - strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.488 kb on - strand, within EX31_RS24710 at 711.488 kb on - strand, within EX31_RS24710 at 711.488 kb on - strand, within EX31_RS24710 at 711.488 kb on - strand, within EX31_RS24710 at 711.489 kb on + strand, within EX31_RS24710 at 711.489 kb on + strand, within EX31_RS24710 at 711.490 kb on - strand, within EX31_RS24710 at 711.490 kb on - strand, within EX31_RS24710 at 711.584 kb on + strand, within EX31_RS24710 at 711.585 kb on - strand, within EX31_RS24710 at 711.765 kb on - strand, within EX31_RS24710 at 711.767 kb on - strand, within EX31_RS24710 at 711.767 kb on - strand, within EX31_RS24710 at 711.786 kb on - strand, within EX31_RS24710 at 711.786 kb on - strand, within EX31_RS24710 at 711.979 kb on - strand, within EX31_RS24710 at 712.159 kb on + strand at 712.163 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.190 kb on + strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.191 kb on - strand at 712.194 kb on + strand at 712.195 kb on - strand at 712.195 kb on - strand at 712.228 kb on + strand at 712.229 kb on - strand at 712.234 kb on + strand at 712.234 kb on + strand at 712.235 kb on - strand at 712.271 kb on + strand at 712.272 kb on - strand at 712.290 kb on + strand at 712.291 kb on - strand at 712.312 kb on - strand at 712.334 kb on + strand at 712.335 kb on - strand at 712.353 kb on - strand at 712.353 kb on - strand at 712.354 kb on + strand at 712.362 kb on - strand at 712.362 kb on - strand at 712.362 kb on - strand at 712.362 kb on - strand at 712.367 kb on + strand at 712.367 kb on + strand at 712.368 kb on - strand at 712.368 kb on - strand at 712.368 kb on - strand at 712.368 kb on - strand at 712.368 kb on - strand at 712.409 kb on + strand at 712.410 kb on - strand at 712.486 kb on - strand at 712.495 kb on + strand at 712.544 kb on - strand at 712.545 kb on + strand at 712.546 kb on - strand at 712.561 kb on - strand at 712.567 kb on - strand at 712.608 kb on - strand at 712.608 kb on - strand at 712.635 kb on - strand at 712.635 kb on - strand at 712.772 kb on - strand at 712.772 kb on - strand at 712.772 kb on - strand at 712.788 kb on + strand at 712.808 kb on - strand at 712.862 kb on - strand, within EX31_RS24715 at 712.888 kb on + strand, within EX31_RS24715 at 712.889 kb on - strand, within EX31_RS24715 at 712.980 kb on - strand, within EX31_RS24715 at 713.097 kb on + strand, within EX31_RS24715 at 713.131 kb on - strand, within EX31_RS24715 at 713.139 kb on + strand, within EX31_RS24715 at 713.139 kb on + strand, within EX31_RS24715 at 713.140 kb on - strand, within EX31_RS24715 at 713.140 kb on - strand, within EX31_RS24715 at 713.176 kb on - strand, within EX31_RS24715 at 713.176 kb on - strand, within EX31_RS24715 at 713.179 kb on - strand, within EX31_RS24715
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 709,674 - EX31_RS24705 0.41 -0.5 709,777 + EX31_RS24705 0.47 -0.0 709,789 + EX31_RS24705 0.48 +0.8 709,789 + EX31_RS24705 0.48 +0.7 709,789 + EX31_RS24705 0.48 +1.1 709,851 + EX31_RS24705 0.52 -0.3 709,851 + EX31_RS24705 0.52 +1.1 709,851 + EX31_RS24705 0.52 +0.1 709,851 + EX31_RS24705 0.52 +2.2 709,851 + EX31_RS24705 0.52 +0.6 709,851 + EX31_RS24705 0.52 +0.9 709,851 + EX31_RS24705 0.52 -0.2 709,851 + EX31_RS24705 0.52 +0.8 709,851 + EX31_RS24705 0.52 -0.1 709,851 + EX31_RS24705 0.52 -0.6 709,852 - EX31_RS24705 0.52 +1.1 709,852 - EX31_RS24705 0.52 -1.2 710,014 + EX31_RS24705 0.63 -1.7 710,197 + EX31_RS24705 0.74 -0.1 710,338 + EX31_RS24705 0.83 +0.6 710,338 + EX31_RS24705 0.83 -1.4 710,350 + EX31_RS24705 0.84 -0.1 710,755 - -0.2 710,755 - +0.8 710,755 - +1.6 710,755 - -0.4 710,776 + +0.9 710,777 - +1.5 710,816 - +1.1 710,820 + -0.5 710,821 - +1.5 710,860 - EX31_RS24710 0.12 -0.5 710,984 - EX31_RS24710 0.20 +1.7 711,069 + EX31_RS24710 0.25 +2.0 711,069 + EX31_RS24710 0.25 -1.2 711,069 + EX31_RS24710 0.25 +0.3 711,070 - EX31_RS24710 0.25 -1.3 711,171 - EX31_RS24710 0.31 -0.5 711,194 + EX31_RS24710 0.33 -1.2 711,194 + EX31_RS24710 0.33 -1.5 711,194 + EX31_RS24710 0.33 +0.1 711,194 + EX31_RS24710 0.33 -1.2 711,194 + EX31_RS24710 0.33 +0.1 711,194 + EX31_RS24710 0.33 -1.9 711,197 + EX31_RS24710 0.33 +1.1 711,197 + EX31_RS24710 0.33 +0.5 711,197 + EX31_RS24710 0.33 -0.6 711,198 - EX31_RS24710 0.33 +0.5 711,205 + EX31_RS24710 0.33 +1.1 711,228 + EX31_RS24710 0.35 +0.1 711,309 - EX31_RS24710 0.40 -0.5 711,309 - EX31_RS24710 0.40 +1.7 711,374 + EX31_RS24710 0.44 +1.3 711,374 + EX31_RS24710 0.44 -1.2 711,374 + EX31_RS24710 0.44 -1.7 711,374 + EX31_RS24710 0.44 +1.8 711,375 - EX31_RS24710 0.44 +0.8 711,396 - EX31_RS24710 0.45 +1.1 711,396 - EX31_RS24710 0.45 +0.4 711,399 - EX31_RS24710 0.46 -0.5 711,399 - EX31_RS24710 0.46 +0.4 711,420 - EX31_RS24710 0.47 -2.2 711,487 + EX31_RS24710 0.51 -0.2 711,487 + EX31_RS24710 0.51 +0.5 711,487 + EX31_RS24710 0.51 +0.7 711,487 + EX31_RS24710 0.51 +0.5 711,487 + EX31_RS24710 0.51 +1.1 711,488 - EX31_RS24710 0.51 +2.1 711,488 - EX31_RS24710 0.51 -0.9 711,488 - EX31_RS24710 0.51 +0.5 711,488 - EX31_RS24710 0.51 +1.1 711,489 + EX31_RS24710 0.51 -0.9 711,489 + EX31_RS24710 0.51 +1.1 711,490 - EX31_RS24710 0.51 -0.5 711,490 - EX31_RS24710 0.51 +1.7 711,584 + EX31_RS24710 0.57 +1.4 711,585 - EX31_RS24710 0.57 -0.9 711,765 - EX31_RS24710 0.69 +1.7 711,767 - EX31_RS24710 0.69 +2.1 711,767 - EX31_RS24710 0.69 -0.8 711,786 - EX31_RS24710 0.70 -0.1 711,786 - EX31_RS24710 0.70 +2.1 711,979 - EX31_RS24710 0.82 +1.1 712,159 + -0.5 712,163 + -0.9 712,190 + +0.7 712,190 + -0.4 712,190 + +1.8 712,190 + +1.1 712,190 + -0.7 712,190 + -1.1 712,191 - +0.5 712,191 - +3.9 712,191 - -1.0 712,191 - +1.1 712,191 - +1.7 712,191 - -0.7 712,191 - -1.8 712,194 + +3.2 712,195 - +1.1 712,195 - +1.1 712,228 + +0.1 712,229 - +2.1 712,234 + +2.4 712,234 + +0.4 712,235 - +2.1 712,271 + +1.1 712,272 - -0.9 712,290 + +1.1 712,291 - +0.2 712,312 - +1.1 712,334 + +0.5 712,335 - -1.7 712,353 - -0.5 712,353 - -1.5 712,354 + +1.1 712,362 - +0.1 712,362 - +1.4 712,362 - +2.7 712,362 - -0.4 712,367 + +1.8 712,367 + +0.1 712,368 - +1.1 712,368 - -0.2 712,368 - +0.1 712,368 - -0.8 712,368 - +0.7 712,409 + -0.9 712,410 - +0.7 712,486 - +1.1 712,495 + -1.2 712,544 - +0.3 712,545 + +0.5 712,546 - -1.8 712,561 - -0.3 712,567 - +0.1 712,608 - +1.1 712,608 - -0.0 712,635 - +0.9 712,635 - -0.9 712,772 - -0.7 712,772 - -0.1 712,772 - -0.7 712,788 + -2.2 712,808 - +0.7 712,862 - EX31_RS24715 0.11 +0.1 712,888 + EX31_RS24715 0.13 -2.1 712,889 - EX31_RS24715 0.13 -1.2 712,980 - EX31_RS24715 0.20 -0.0 713,097 + EX31_RS24715 0.28 +0.1 713,131 - EX31_RS24715 0.31 +0.5 713,139 + EX31_RS24715 0.32 -1.2 713,139 + EX31_RS24715 0.32 -1.5 713,140 - EX31_RS24715 0.32 -1.5 713,140 - EX31_RS24715 0.32 -1.0 713,176 - EX31_RS24715 0.34 +0.2 713,176 - EX31_RS24715 0.34 -0.7 713,179 - EX31_RS24715 0.34 +0.1
Or see this region's nucleotide sequence